Microarray Analysis of Immunity Against WSSV in Response to Injection of Non-specific Long dsRNA in Kuruma Shrimp, Marsupenaeus japonicus

Marine Biotechnology

Volumn 17, Issue 4, 2015, Pages 493-501

  Maralit, Benedict Arias ^a   Komatsu, Mami ^a   Hipolito, Sheryll Grospe ^a   Hirono, Ikuo ^a   Kondo, Hidehiro ^a  

^a TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

dsGFP; Innate; Microarray; Non specific immunity; RNAi; Shrimp

Indexed keywords

GENE EXPRESSION; GENES; MICROARRAYS; POLYMERASE CHAIN REACTION; RNA; SHELLFISH;

DSGFP; INNATE; NON-SPECIFIC IMMUNITY; RNAI; SHRIMP;

PROTEINS;

ARRAY; CRUSTACEAN; FLUORESCENCE; GENE EXPRESSION; GENETIC ENGINEERING; GENOME; HOMEOSTASIS; IMMUNITY; INDUCED RESPONSE; INNATE BEHAVIOR; MORTALITY; PROTEIN; RNA; SURVIVAL; VIRUS;

DECAPODA (CRUSTACEA); MARSUPENAEUS JAPONICUS; SHRIMP WHITE SPOT SYNDROME VIRUS;

DOUBLE STRANDED RNA; GREEN FLUORESCENT PROTEIN; PRIMER DNA; SMALL INTERFERING RNA;

ANIMAL; GENE EXPRESSION REGULATION; GENETICS; IMMUNOLOGY; INNATE IMMUNITY; MICROARRAY ANALYSIS; PATHOGENICITY; PENAEIDAE; PROCEDURES; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SURVIVAL ANALYSIS; TIME FACTOR; VIROLOGY; WHITE SPOT SYNDROME VIRUS;

ANIMALS; DNA PRIMERS; GENE EXPRESSION REGULATION; GREEN FLUORESCENT PROTEINS; IMMUNITY, INNATE; MICROARRAY ANALYSIS; PENAEIDAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, DOUBLE-STRANDED; RNA, SMALL INTERFERING; SURVIVAL ANALYSIS; TIME FACTORS; WHITE SPOT SYNDROME VIRUS 1;

EID: 84933671563     PISSN: 14362228     EISSN: 14362236     Source Type: Journal    
DOI: 10.1007/s10126-015-9637-9     Document Type: Article

References (37)

1. Calduch-Giner JA, Echasseriau Y, Crespo D, Baron D, Planas JV, Prunet P, Pérez-Sánchez J (2014) Transcriptional assessment by microarray analysis and large-scale meta-analysis of the metabolic capacity of cardiac and skeletal muscle tissues to cope with reduced nutrient availability in gilthead sea bream (Sparus aurata L.). Mar Biotechnol 16(4):423–435
2. Chen YH, Jia XT, Zhao L, Li CZ, Zhang SA, Chen YG, Weng SP, He JG (2011) Identification and functional characterization of Dicer2 and five single VWC domain proteins of Litopenaeus vannamei. Dev Comp Immunol 35:661–671
3. Chendrimada TP, Finn KJ, Ji X, Baillat D, Gregory RI, Liebhaber SA (2007) MicroRNA silencing through RISC recruitment of eIF6. Nature 447:823–828
4. Conesa A, Götz S, Garcia-Gomez JM, Terol J, Talon M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674–3676
5. Costa F, Valença N, Silva A, Bezerra G, Cavada B, Rádis-Baptista G (2011) Cloning and molecular modeling of Litopenaeus vannamei (Penaeidae) C-type lectin homologs with mutated mannose binding domain-2. Genet Mol Res 10:650–664
6. Daniels SM, Melendez-Pena CE, Scarborough RJ, Daher A, Christensen HS et al (2009) Characterization of the TRBP domain required for dicer interaction and function in RNA interference. BMC Mol Biol 10:38
7. Danwattananusorn T, Fagutao FF, Shitara A, Kondo H, Aoki T, Nozaki R, Hirono I (2011) Molecular characterization and expression analysis of heat shock proteins 40, 70 and 90 from kuruma shrimp Marsupenaeus japonicus. Fish Sci 77:929–937
8. De Hoon MJL, Imoto S, Nolan J, Miyano S (2004) Open source clustering software. Bioinformatics 20(9):1453–1454
9. Fagutao FF, Koyama T, Kaizu A, Saito-Taki T, Kondo H, Aoki T, Hirono I (2009) Increased bacterial load in shrimp hemolymph in the absence of prophenoloxidase. FEBS J 276:5298–5306
10. Fagutao FF, Maningas MB, Kondo H, Aoki T, Hirono I (2012) Transglutaminase regulates immune-related genes in shrimp. Fish Shellfish Immunol 32:711–715
11. Fagutao FF, Yasuike M, Caipang CM, Kondo H, Hirono I, Takahashi Y (2008) Gene expression profile of hemocytes of kuruma shrimp, Marsupenaeus japonicus, following peptidoglycan stimulation. Mar Biotechnol 10:731–740
12. Flegel TW, Sritunyalucksana K (2011) Shrimp molecular responses to viral pathogens. Mar Biotechnol 13:587–607
13. Galiana-Arnoux D, Dostert C, Schneemann A, Hoffmann JA, Imler JL (2006) Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila. Nature Immunol 7:590–597
14. Homvises T, Tassanakajon A, Somboonwiwat K (2010) Penaeus monodon SERPIN, PmSERPIN6, is implicated in the shrimp innate immunity. Fish Shellfish Immunol 29(5):890–898
15. Kaitetzidou E, Crespo D, Vraskou Y, Antonopoulou E, Planas JV (2012) Transcriptomic response of skeletal muscle to lipopolysaccharide in the gilthead seabream (Sparus aurata). Mar Biotechnol 14(5):605–619
16. Kim DH, Behlke MA, Rose SD, Chang MS, Choi S, Rossi JJ (2005) Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy. Nat Biotechnol 23:222–226
17. Labreuche Y, Veloso A, de la Vega E, Gross PS, Chapman RW, Browdy CL (2010) Non-specific activation of antiviral immunity and induction of RNA interference may engage the same pathway in the Pacific white leg shrimp Litopenaeus vannamei. Dev Comp Immunol 34:1209–1218
18. Li F, Wang D, Li S (2010) A Dorsal homolog (FcDorsal) in the Chinese shrimp Fenneropenaeus chinensis is responsive to both bacteria and WSSV challenge. Dev Comp Immunol 34(8):874–883
19. Limtipsuntorn U, Haga Y, Kondo H, Hirono I, Satoh S (2014) Microarray analysis of hepatic gene expression in juvenile Japanese flounder Paralichthys olivaceus fed diets supplemented with fish or vegetable oils. Mar Biotechnol 16(1):88–102
20. Liu Y, Li F, Wang B, Dong B, Zhang X, Xiang J (2009) A serpin from Chinese shrimp Fenneropenaeus chinensis is responsive to bacteria and WSSV challenge. Fish Shellfish Immunol 26(3):345–351
21. Luo T, Li F, Lei K, Xu X (2007) Genomic organization, promoter characterization and expression profiles of an antiviral gene PmAV from the shrimp Penaeus monodon. Mol Immunol 44:1516–1523
22. Luo T, Zhang X, Shao Z, Xu X (2003) PmAV, a novel gene involved in virus resistance of shrimp Penaeus monodon. FEBS Lett 551:53–57
23. Mazurais D, Ferraresso S, Gatta PP, Desbruyères E, Severe A, Corporeau C, Claireaux G, Bargelloni L, Zambonino-Infante JL (2014) Identification of hypoxia regulated genes in the liver of common sole (Solea solea) fed different dietary lipid contents. Mar Biotechnol 16(3):277–288
24. Prapavorarat A, Vatanavicharn T, Soderhall K, Tassanakajon A (2010) A novel viral responsive protein is involved in hemocyte homeostasis in the black tiger shrimp, Penaeus monodon. J Biol Chem 285:21467–21477
25. Rebl A, Korytář T, Köbis JM, Verleih M, Krasnov A, Jaros J, Kühn C, Köllner B, Goldammer T (2014) Transcriptome profiling reveals insight into distinct immune responses to Aeromonas salmonicida in gill of two rainbow trout strains. Mar Biotechnol 16(3):333–348
26. Robalino J, Bartlett T, Chapman R, Gross P, Browdy C, Warr G (2007) Double stranded RNA and antiviral immunity in marine shrimp: inducible host mechanisms and evidence for the evolution of viral counter-responses. Dev Comp Immunol 31:537–547
27. Robalino J, Bartlett T, Shepard E, Prior S, Jaramillo G, Scura E (2005) Double-stranded RNA induces sequence specific antiviral silencing in addition to nonspecific immunity in a marine shrimp: convergence of RNA interference and innate immunity in the invertebrate antiviral response? J Virol 79:13561–13571
28. Robalino J, Browdy CL, Prior S, Metz A, Parnell P, Gross P, Warr G (2004) Induction of antiviral immunity by double-stranded RNA in a marine invertebrate. J Virol 78:10442–10448
29. Saldanha AJ (2004) Java treeview-extensible visualization of microarray data. Bioinformatics 20:3246–3248
30. Sudhakaran R, Mekata T, Kono T, Inada M, Okugawa S, Yoshimine M, Yoshida T, Sakai M, Itami T (2011) Double-stranded RNA-mediated silencing of the white spot syndrome virus VP28 gene in kuruma shrimp, Marsupenaeus japonicus. Aquac Res 42:1153–1162
31. Su J, Oanh DTH, Lyons RE, Leeton L, van Hulten MCW, Tan S-H (2008) A key gene of the RNA interference pathway in the black tiger shrimp, Penaeus monodon: identification and functional characterization of Dicer-1. Fish Shellfish Immunol 24:223–233
32. Vatanavicharn T, Prapavorarat A, Jaree P, Somboonwiwat K, Tassanakajon A (2014) PmVRP15, a novel viral responsive protein from the black tiger shrimp, Penaeus monodon, promoted white spot syndrome virus replication. PLoS One 9(3):e91930
33. Wang B, Li F, Dong B, Zhang X, Zhang C, Xiang J (2006a) Discovery of the genes in response to white spot syndrome virus (WSSV) infection in Fenneropenaeus chinensis through cDNA microarray. Mar Biotechnol 8(5):491–500
34. Wang S, Chen AJ, Shi LJ, Zhao XF, Wang JX (2012) TRBP and eIF6 homologue in Marsupenaeus japonicus play crucial roles in antiviral response. PLoS One 7:e30057
35. Wang XH, Aliyari R, Li WX, Li HW, Kim K, Carthew R (2006b) RNA interference directs innate immunity against viruses in adult Drosophila. Science 312:452–454
36. Xu YH, Bi WJ, Wang XW, Zhao YR, Zhao XF, Wang JX (2014) Two novel C-type lectins with a low-density lipoprotein receptor class A domain have antiviral function in the shrimp Marsupenaeus japonicus. Dev Comp Immunol 42:323–332
37. Yang L, Li X, Jiang S, Qiu L, Zhou F, Liu W, Jiang S (2014) Characterization of Argonaute2 gene from black tiger shrimp (Penaeus monodon) and its responses to immune challenges. Fish Shellfish Immunol 36(1):261–269