Cloning and molecular modeling of litopenaeus vannamei (penaeidae) c-type lectin homologs with mutated mannose binding domain-2

Genetics and Molecular Research

Volumn 10, Issue 2, 2011, Pages 650-664

  Costa, F H F ^a   Valenca N S M S ^b   Silva, A R B P ^c   Bezerra, G A ^a,d   Cavada, B S ^a   Radis Baptista G ^a,b  

^a FEDERAL UNIVERSITY OF CEARÁ   (Brazil)

^b FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^c INSTITUTO BUTANTAN   (Brazil)

^d UNIVERSITY OF GRAZ   (Austria)

Author keywords

C type lectin like domain; Innate immune related gene; Invertebrate c type lectin; Molecular modeling; Molecular phylogenetic analysis; Penaeid shrimp

Indexed keywords

CARBOHYDRATE BINDING PROTEIN; COMPLEMENTARY DNA; GALACTOSE; LECTIN; MANNOSE BINDING LECTIN 2;

AMINO ACID SUBSTITUTION; ANIMAL TISSUE; ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; GENE CLUSTER; GENE DUPLICATION; GENETIC VARIABILITY; LECTIN BINDING SITE; LITOPENAEUS VANNAMEI; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR MODEL; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PENAEIDAE; PROTEIN DOMAIN; PROTEIN EXPRESSION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; EVOLUTION, MOLECULAR; LECTINS, C-TYPE; MANNOSE-BINDING LECTINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PENAEIDAE; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ANIMALIA; DECAPODA (CRUSTACEA); INFECTIOUS HYPODERMAL AND HEMATOPOIETIC NECROSIS VIRUS; INVERTEBRATA; LITOPENAEUS VANNAMEI; PENAEIDAE;

EID: 79955804763     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: 10.4238/vol10-2gmr999     Document Type: Article

References (42)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. Ausubel FM, Brente R, Kingston RE, Moore DD, et al. (1995). Current Protocols in Molecular Biology. John Wiley & Sons, Inc., New York.
3. Christophides GK, Vlachou D and Kafatos FC (2004). Comparative and functional genomics of the innate immune system in the malaria vector Anopheles gambiae. Immunol. Rev. 198: 127-148.
4. Dodd RB and Drickamer K (2001). Lectin-like proteins in model organisms: implications for evolution of carbohydrate-binding activity. Glycobiology 11: 71R-79R.
5. 2+-dependent animal lectins. Prog. Nucleic Acids Res. Mol. Biol. 45: 207-232.
6. Drickamer K (1995). Increasing diversity of animal lectin structures. Curr. Opin. Struct. Biol. 5: 612-616.
7. Edgar RC (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797.
8. Gascuel O (1997). BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14: 685-695.
9. Gouy M, Guindon S and Gascuel O (2010). SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 27: 221-224.
10. Hoffmann JA, Kafatos FC, Janeway CA and Ezekowitz RA (1999). Phylogenetic perspectives in innate immunity. Science 284: 1313-1318.
11. Hooft RW, Sander C, Scharf M and Vriend G (1996). The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value. Comput. Appl. Biosci. 12: 525-529.
12. Hooft RW, Vriend G, Sander C and Abola EE (1996). Errors in protein structures. Nature 381: 272.
13. Ji PF, Yao CL and Wang ZY (2009). Immune response and gene expression in shrimp (Litopenaeus vannamei) hemocytes and hepatopancreas against some pathogen-associated molecular patterns. Fish Shellfish Immunol. 27: 563-570.
14. Kerrigan AM and Brown GD (2009). C-type lectins and phagocytosis. Immunobiology 214: 562-575.
15. Kong HJ, Park EM, Nam BH, Kim YO, et al. (2008). A C-type lectin like-domain (CTLD)-containing protein (PtLP) from the swimming crab Portunus trituberculatus. Fish Shellfish Immunol. 25: 311-314.
16. Krieger E, Koraimann G and Vriend G (2002). Increasing the precision of comparative models with YASARA NOVA - a self-parameterizing force field. Proteins 47: 393-402.
17. Leu JH, Chang CC, Wu JL, Hsu CW, et al. (2007). Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon. BMC Genomics 8: 120.
18. Liu YC, Li FH, Dong B, Wang B, et al. (2007). Molecular cloning, characterization and expression analysis of a putative C-type lectin (Fclectin) gene in Chinese shrimp Fenneropenaeus chinensis. Mol. Immunol. 44: 598-607.
19. Luo T, Yang H, Li F, Zhang X, et al. (2006). Purification, characterization and cDNA cloning of a novel lipopolysaccharide-binding lectin from the shrimp Penaeus monodon. Dev. Comp. Immunol. 30: 607-617.
20. Ma TH, Tiu SH, He JG and Chan SM (2007). Molecular cloning of a C-type lectin (LvLT) from the shrimp Litopenaeus vannamei: early gene down-regulation after WSSV infection. Fish Shellfish Immunol. 23: 430-437.
21. Ma TH, Benzie JA, He JG and Chan SM (2008). PmLT, a C-type lectin specific to hepatopancreas is involved in the innate defense of the shrimp Penaeus monodon. J. Invertebr. Pathol. 99: 332-341.
22. Matsubara H, Nakamura-Tsuruta S, Hirabayashi J, Jimbo M, et al. (2007). Diverse sugar-binding specificities of marine invertebrate C-type lectins. Biosci. Biotechnol. Biochem. 71: 513-519.
23. Nunan LM, Arce SM, Staha RJ and Lightner DV (2001). Prevalence of infectious hypodermal and hematopoietic necrosis virus (IHHNV) and white spot syndrome virus (WSSV) in Litopenaeus vannamei in the Pacific Ocean of the coast of Panama. J. World Aquaculture Soc. 32: 330-334.
24. Ogawa T, Chijiwa T, Oda-Ueda N and Ohno M (2005). Molecular diversity and accelerated evolution of C-type lectin-like proteins from snake venom. Toxicon 45: 1-14.
25. Ohno M, Chijiwa T, Oda-Ueda N, Ogawa T, et al. (2003). Molecular evolution of myotoxic phospholipases A2 from snake venom. Toxicon 42: 841-854.
26. Rittidach W, Paijit N and Utarabhand P (2007). Purification and characterization of a lectin from the banana shrimp Fenneropenaeus merguiensis hemolymph. Biochim. Biophys. Acta 1770: 106-114.
27. Schnitger AK, Yassine H, Kafatos FC and Osta MA (2009). Two C-type lectins cooperate to defend Anopheles gambiae against Gram-negative bacteria. J. Biol. Chem. 284: 17616-17624.
28. Soonthornchai W, Rungrassamee W, Karoonuthaisiri N, Jarayabhand P, et al. (2010). Expression of immune-related genes in the digestive organ of shrimp, Penaeus monodon, after an oral infection by Vibrio harveyi. Dev. Comp. Immunol. 34: 19-28.
29. Sun J, Wang L, Wang B, Guo Z, et al. (2008). Purification and characterization of a natural lectin from the plasma of the shrimp Fenneropenaeus chinensis. Fish Shellfish Immunol. 25: 290-297.
30. Sun YD, Fu LD, Jia YP, Du XJ, et al. (2008). A hepatopancreas-specific C-type lectin from the Chinese shrimp Fenneropenaeus chinensis exhibits antimicrobial activity. Mol. Immunol. 45: 348-361.
31. Takase H, Watanabe A, Yoshizawa Y, Kitami M, et al. (2009). Identification and comparative analysis of three novel C-type lectins from the silkworm with functional implications in pathogen recognition. Dev. Comp. Immunol. 33: 789-800.
32. Tian YY, Liu Y, Zhao XF and Wang JX (2009). Characterization of a C-type lectin from the cotton bollworm, Helicoverpa armigera. Dev. Comp. Immunol. 33: 772-779.
33. Wang XW, Xu WT, Zhang XW, Zhao XF, et al. (2009). A C-type lectin is involved in the innate immune response of Chinese white shrimp. Fish Shellfish Immunol. 27: 556-562.
34. Wang XW, Zhang XW, Xu WT, Zhao XF, et al. (2009). A novel C-type lectin (FcLec4) facilitates the clearance of Vibrio anguillarum in vivo in Chinese white shrimp. Dev. Comp. Immunol. 33: 1039-1047.
35. Weis WI and Drickamer K (1996). Structural basis of lectin-carbohydrate recognition. Annu. Rev. Biochem. 65: 441-473.
36. Wood-Charlson EM and Weis VM (2009). The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis. Dev. Comp. Immunol. 33: 881-889.
37. Yamaura K, Takahashi KG and Suzuki T (2008). Identification and tissue expression analysis of C-type lectin and galectin in the Pacific oyster, Crassostrea gigas. Comp. Biochem. Physiol. B. Biochem. Mol. Biol. 149: 168-175.
38. Zelensky AN and Gready JE (2005). The C-type lectin-like domain superfamily. FEBS J. 272: 6179-6217.
39. Zhang H, Wang H, Wang L, Song X, et al. (2009a). A novel C-type lectin (Cflec-3) from Chlamys farreri with three carbohydrate-recognition domains. Fish Shellfish Immunol. 26: 707-715.
40. Zhang XW, Xu WT, Wang XW, Mu Y, et al. (2009b). A novel C-type lectin with two CRD domains from Chinese shrimp Fenneropenaeus chinensis functions as a pattern recognition protein. Mol. Immunol. 46: 1626-1637.
41. Zhang Y, Qiu L, Song L, Zhang H, et al. (2009c). Cloning and characterization of a novel C-type lectin gene from shrimp Litopenaeus vannamei. Fish Shellfish Immunol. 26: 183-192.
42. Zhao ZY, Yin ZX, Xu XP, Weng SP, et al. (2009). A novel C-type lectin from the shrimp Litopenaeus vannamei possesses anti-white spot syndrome virus activity. J. Virol. 83: 347-356.