Quantitative analysis of cellular proteome alterations of Pseudomonas putida to naphthalene-induced stress

Biotechnology Letters

Volumn 37, Issue 8, 2015, Pages 1645-1654

  Li, Shan Shan ^a,b   Hu, Xiao ^a   Zhao, Hong ^a   Li, Ya Xiao ^a   Zhang, Li ^a   Gong, Li Jun ^a   Guo, Jin ^a   Zhao, Hua Bing ^a,c  

^a MEDICAL COLLEGE OF CHINESE PEOPLE'S ARMED POLICE FORCES   (China)

^b XI'AN JIAOTONG UNIVERSITY   (China)

^c Animal Plant and Food Inspection Center   (China)

Author keywords

2DE MALDI TOF MS; Isotope coded protein labeling; Naphthalene induced proteome; Proteomic analysis; Pseudomonas putida ND6

Indexed keywords

AMINO ACIDS; BACTERIA; BIOSYNTHESIS; CARBON; FATTY ACIDS; ISOTOPES; MOBILE SECURITY; PROTEINS; SYNTHESIS (CHEMICAL);

2DE-MALDI/TOF/MS; AMINO ACID METABOLISM; COMPARATIVE ANALYSIS; EXPRESSION LEVELS; FATTY ACID SYNTHESIS; PROTEIN LABELING; PROTEOMIC ANALYSIS; PSEUDOMONAS PUTIDA;

NAPHTHALENE;

BACTERIA (MICROORGANISMS); PSEUDOMONAS PUTIDA;

BACTERIAL PROTEIN; FATTY ACID; NAPHTHALENE; NAPHTHALENE DERIVATIVE; PROTEOME;

CHEMISTRY; CYTOSOL; DRUG EFFECTS; DRUG TOLERANCE; PHYSIOLOGICAL STRESS; PSEUDOMONAS PUTIDA;

BACTERIAL PROTEINS; CYTOSOL; DRUG TOLERANCE; FATTY ACIDS; NAPHTHALENES; PROTEOME; PSEUDOMONAS PUTIDA; STRESS, PHYSIOLOGICAL;

EID: 84933532138     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-015-1828-y     Document Type: Article

References (27)

1. Bell A, Hancock RE (1989) Outer membrane protein H1 of Pseudomonas aeruginosa: purification of the protein and cloning and nucleotide sequence of the gene. J Bacteriol 171:3211–3217
2. Benndorf D, Thiersch M, Loffhagen N, Kunath C, Harms H (2006) Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites. Proteomics 6:3319–3329
3. Brandt U (2006) Energy converting NADH: quinone oxidoreductase (complex I). Annu Rev Biochem 75:69–92
4. Cao B, Loh KC (2008) Catabolic pathways and cellular responses of Pseudomonas putida P8 during growth on benzoate with a proteomics approach. Biotechnol Bioeng 101:1297–1312
5. Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H (2011) Fatty acid biosynthesis in actinomycetes. FEMS Microbiol Rev 35:475–497
6. Jaeger T, Budde H, Flohé L, Menge U, Singh M, Trujillo M, Radi R (2004) Multiple thioredoxin-mediated routes to detoxify hydroperoxides in Mycobacterium tuberculosis. Arch Biochem Biophys 423:182–191
7. Kim YH, Cho K, Yun SH, Kim JY, Kwon KH, Yoo JS, Kim SI (2006) Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis. Proteomics 6:1301–1318
8. Kumari P, Kant S, Zaman S, Mahapatro GK, Banerjee N, Sarin NB (2014) A novel insecticidal GroEL protein from Xenorhabdus nematophila confers insect resistance in tobacco. Transgenic Res 23:99–107
9. Kurbatov L, Albrecht D, Herrmann H, Petruschka L (2006) Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy. Environ Microbiol 8:466–478
10. Lee S, Jeon E, Jung Y, Lee J (2012) Heterologous co-expression of accA, fabD, and thioesterase genes for improving long-chain fatty acid production in Pseudomonas aeruginosa and Escherichia coli. Appl Biochem Biotechnol 167:24–38
11. Li W, Shi J, Wang X, Han Y, Tong W, Ma L, Liu B, Cai B (2004) Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. Gene 336:231–240
12. Li S, Li X, Zhao H, Cai B (2011) Physiological role of the novel salicylaldehyde dehydrogenase NahV in mineralization of naphthalene by Pseudomonas putida ND6. Microbiol Res 166:643–653
13. Li S, Zhao H, Li Y, Niu S, Cai B (2012) Complete genome sequence of the naphthalene-degrading Pseudomonas putida strain ND6. J Bacteriol 194:5154–5155
14. Li S, Zhao H, Li Y, Niu S, Cai B (2013) Complete nucleotide sequence of plasmid pND6-2 from Pseudomonas putida ND6 and characterization of conjugative genes. Gene 512:148–156
15. Loh KC, Cao B (2008) Paradigm in biodegradation using Pseudomonas putida—a review of proteomics studies. Enzyme Microb Technol 43:1–12
16. Manara A, DalCorso G, Baliardini C, Farinati S, Cecconi D, Furini A (2012) Pseudomonas putida response to cadmium: changes in membrane and cytosolic proteomes. J Proteome Res 11:4169–4179
17. Marco-Marin C, Gil-Ortiz F, Rubio V (2005) The crystal structure of Pyrococcus furiosus UMP kinase provides insight into catalysis and regulation in microbial pyrimidine nucleotide biosynthesis. J Mol Biol 352:438–454
18. Mathews II, Kappock TJ, Stubbe J, Ealick SE (1999) Crystal structure of Escherichia coli PurE, an unusual mutase in the purine biosynthetic pathway. Structure 7:1395–1406
19. Meyer E, Kappock TJ, Osuji C, Stubbe J (1999) Evidence for the direct transfer of the carboxylate of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to generate 4-carboxy-5-aminoimidazole ribonucleotide catalyzed by Escherichia coli PurE, an N5-CAIR mutase. Biochemistry 38:3012–3018
20. Meyer Y, Buchanan BB, Vignols F, Reichheld JP (2009) Thioredoxins and glutaredoxins: unifying elements in redox biology. Annu Rev Genet 43:335–367
21. Pumphrey GM, Madsen EL (2007) Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology 153:3730–3738
22. Ray P, Girard V, Gault M, Job C, Bonneu M, Mandrand-Berthelot MA, Singh SS, Job D, Rodrigue A (2013) Pseudomonas putida KT2440 response to nickel or cobalt induced stress by quantitative proteomics. Metallomics 5:68–79
23. Santos PM, Benndorf D, Sá-Correia I (2004) Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 4:2640–2652
24. Symmons MF, Jones GH, Luisi BF (2000) A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation. Structure 8:1215–1226
25. Tamber S, Ochs MM, Hancock RE (2006) Role of the novel OprD family of porins in nutrient uptake in Pseudomonas aeruginosa. J Bacteriol 188:45–54
26. Yun SH, Kim YH, Joo EJ, Choi JS, Sohn JH, Kim SI (2006) Proteome analysis of cellular response of Pseudomonas putida KT2440 to tetracycline stress. Curr Microbiol 53:95–101
27. Zhao H, Chen D, Li Y, Cai B (2005) Overexpression, purification and characterization of a new salicylate hydroxylase from naphthalene-degrading Pseudomonas sp. strain ND6. Microbiol Res 160:307–313