-
1
-
-
0022446684
-
Continuous and discontinuous protein antigenic determinants
-
D. J. Barlow, M. S. Edwards, and J. M. Thornton, "Continuous and discontinuous protein antigenic determinants," Nature, vol. 322, no. 6081, pp. 747-748, 1986.
-
(1986)
Nature
, vol.322
, Issue.6081
, pp. 747-748
-
-
Barlow, D.J.1
Edwards, M.S.2
Thornton, J.M.3
-
2
-
-
0035699903
-
Antigenicity and immunogenicity of synthetic peptides
-
M. H. V. Van Regenmortel, "Antigenicity and immunogenicity of synthetic peptides," Biologicals, vol. 29, no. 3-4, pp. 209-213, 2001.
-
(2001)
Biologicals
, vol.29
, Issue.3-4
, pp. 209-213
-
-
Van Regenmortel, M.H.V.1
-
3
-
-
34248178912
-
TheMEPSserver for identifying protein conformational epitopes
-
article S6
-
T. Castrignanò, P. D'Onorio De Meo, D. Carrabino, M. Orsini, M. Floris, and A. Tramontano, "TheMEPSserver for identifying protein conformational epitopes," BMC Bioinformatics, vol. 8, supplement 1, article S6, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Castrignanò, T.1
De D'onorio, M.P.2
Carrabino, D.3
Orsini, M.4
Floris, M.5
Tramontano, A.6
-
4
-
-
20344405720
-
3depitope-explorer (3dex): Localization of conformational epitopes within three-dimensional structures of proteins
-
A. Schreiber, M. Humbert, A. Benz, and U. Dietrich, "3DEpitope-Explorer (3DEX): localization of conformational epitopes within three-dimensional structures of proteins," Journal of Computational Chemistry, vol. 26, no. 9, pp. 879-887, 2005.
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.9
, pp. 879-887
-
-
Schreiber, A.1
Humbert, M.2
Benz, A.3
Dietrich, U.4
-
5
-
-
33750341091
-
MIMOX: A web tool for phage display based epitope mapping
-
article 451
-
J. Huang, A. Gutteridge, W. Honda, and M. Kanehisa, "MIMOX: a web tool for phage display based epitope mapping," BMC Bioinformatics, vol. 7, article 451, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Huang, J.1
Gutteridge, A.2
Honda, W.3
Kanehisa, M.4
-
6
-
-
34249886331
-
Stepwise prediction of conformational discontinuous B-cell epitopes using the mapitope algorithm
-
E.M. Bublil, N.T. Freund, I. Mayrose et al., "Stepwise prediction of conformational discontinuous B-cell epitopes using the mapitope algorithm," Proteins: Structure, Function and Genetics, vol. 68, no. 1, pp. 294-304, 2007.
-
(2007)
Proteins: Structure, Function and Genetics
, vol.68
, Issue.1
, pp. 294-304
-
-
Bublil, E.M.1
Freund, N.T.2
Mayrose, I.3
-
7
-
-
57749120338
-
Deciphering epitope specificities within polyserum using affinity selection of
-
random peptides and a novel algorithm based on pattern recognition theory
-
D. A. Denisov, G. F. Denisova, A. Lelic, M. B. Loeb, and J. L. Bramson, "Deciphering epitope specificities within polyserum using affinity selection of random peptides and a novel algorithm based on pattern recognition theory," Molecular Immunology, vol. 46, no. 3, pp. 429-436, 2009.
-
(2009)
Molecular Immunology
, vol.46
, Issue.3
, pp. 429-436
-
-
Denisov, D.A.1
Denisova, G.F.2
Lelic, A.3
Loeb, M.B.4
Bramson, J.L.5
-
8
-
-
0038309585
-
SiteLight: Bindingsite prediction using phage display libraries
-
I. Halperin, H. Wolfson, and R. Nussinov, "SiteLight: bindingsite prediction using phage display libraries," Protein Science, vol. 12, no. 7, pp. 1344-1359, 2003.
-
(2003)
Protein Science
, vol.12
, Issue.7
, pp. 1344-1359
-
-
Halperin, I.1
Wolfson, H.2
Nussinov, R.3
-
9
-
-
69849095169
-
Automated detection of conformational epitopes using phage display peptide sequences
-
S. S. Negi and W. Braun, "Automated detection of conformational epitopes using phage display peptide sequences," Bioinformatics and Biology Insights, vol. 2009, no. 3, pp. 71-81, 2009.
-
(2009)
Bioinformatics and Biology Insights
, vol.2009
, Issue.3
, pp. 71-81
-
-
Negi, S.S.1
Braun, W.2
-
10
-
-
33846672181
-
Epitopemapping using combinatorial phage-display libraries: A graph-based algorithm
-
I. Mayrose, T. Shlomi, N. D. Rubinstein et al., "Epitopemapping using combinatorial phage-display libraries: a graph-based algorithm,"Nucleic Acids Research, vol. 35,no. 1, pp.69-78, 2007.
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.1
, pp. 69-78
-
-
Mayrose, I.1
Shlomi, T.2
Rubinstein, N.D.3
-
11
-
-
60649084396
-
Pep-3D-search: A method for B-cell epitope prediction based onmimotope analysis
-
article 538
-
Y. X. Huang, Y. L. Bao, S. Y. Guo, Y. Wang, C. G. Zhou, and Y. X. Li, "Pep-3D-search: a method for B-cell epitope prediction based onmimotope analysis,"BMC Bioinformatics, vol. 9, article 538, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Huang, Y.X.1
Bao, Y.L.2
Guo, S.Y.3
Wang, Y.4
Zhou, C.G.5
Li, Y.X.6
-
12
-
-
80052876042
-
MimoPro: A more efficient web-based tool for epitope prediction using phage display libraries
-
article 199
-
W. H. Chen, P. P. Sun, Y. Lu, W. W. Guo, Y. X. Huang, and Z. Q. Ma, "MimoPro: a more efficient web-based tool for epitope prediction using phage display libraries," BMC Bioinformatics, vol. 12, article 199, 2011.
-
(2011)
BMC Bioinformatics
, vol.12
-
-
Chen, W.H.1
Sun, P.P.2
Lu, Y.3
Guo, W.W.4
Huang, Y.X.5
Ma, Z.Q.6
-
13
-
-
79251499735
-
Bioinformatics resources and tools for phage display
-
J. Huang, B. Ru, and P. Dai, "Bioinformatics resources and tools for phage display," Molecules, vol. 16, no. 1, pp. 694-709, 2011.
-
(2011)
Molecules
, vol.16
, Issue.1
, pp. 694-709
-
-
Huang, J.1
Ru, B.2
Dai, P.3
-
14
-
-
84861468049
-
MimoDB 2.0: A mimotope database and beyond
-
J. Huang, B. Ru, P. Zhu et al., "MimoDB 2.0: a mimotope database and beyond," Nucleic Acids Research, vol. 40, no. 1, pp. D271-D277, 2012.
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.1
, pp. D271-D277
-
-
Huang, J.1
Ru, B.2
Zhu, P.3
-
16
-
-
0037197254
-
Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
-
O.V. Tsodikov, M. Thomas Record Jr., and Y. V. Sergeev, "Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature," Journal of Computational Chemistry, vol. 23, no. 6, pp. 600-609, 2002.
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.6
, pp. 600-609
-
-
Tsodikov, O.V.1
Thomas Record, M.2
Sergeev, Y.V.3
-
17
-
-
37749042370
-
Antibody-protein interactions: Benchmark datasets and prediction tools evaluation
-
article 64
-
J. V. Ponomarenko and P. E. Bourne, "Antibody-protein interactions: benchmark datasets and prediction tools evaluation," BMC Structural Biology, vol. 7, article 64, 2007.
-
(2007)
BMC Structural Biology
, vol.7
-
-
Ponomarenko, J.V.1
Bourne, P.E.2
-
18
-
-
21644480883
-
Protein-protein docking benchmark 2.0: An update
-
J. Mintseris, K. Wiehe, B. Pierce et al., "Protein-protein docking benchmark 2.0: an update," Proteins: Structure, Function and Genetics, vol. 60, no. 2, pp. 214-216, 2005.
-
(2005)
Proteins: Structure, Function and Genetics
, vol.60
, Issue.2
, pp. 214-216
-
-
Mintseris, J.1
Wiehe, K.2
Pierce, B.3
-
19
-
-
58049187138
-
ElliPro: A new structure-based tool for the prediction of antibody epitopes
-
article 514
-
J. Ponomarenko, H.-H. Bui, W. Li et al., "ElliPro: a new structure-based tool for the prediction of antibody epitopes," BMC Bioinformatics, vol. 9, article 514, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Ponomarenko, J.1
Bui, H.-H.2
Li, W.3
-
20
-
-
45449086674
-
PEPITO: Improved discontinuous B-cell epitope prediction usingmultiple distance thresholds and half sphere exposure
-
M. J. Sweredoski and P. Baldi, "PEPITO: improved discontinuous B-cell epitope prediction usingmultiple distance thresholds and half sphere exposure," Bioinformatics, vol. 24, no. 12, pp. 1459-1460, 2008.
-
(2008)
Bioinformatics
, vol.24
, Issue.12
, pp. 1459-1460
-
-
Sweredoski, M.J.1
Baldi, P.2
-
21
-
-
70449441123
-
Epitopia: A web-server for predicting B-cell epitopes
-
article 1471
-
N. D. Rubinstein, I. Mayrose, E. Martz, and T. Pupko, "Epitopia: a web-server for predicting B-cell epitopes," BMC Bioinformatics, vol. 10, article 1471, p. 287, 2009.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 287
-
-
Rubinstein, N.D.1
Mayrose, I.2
Martz, E.3
Pupko, T.4
-
22
-
-
70449408296
-
Prediction of antigenic epitopes on protein surfaces by consensus scoring
-
article 302
-
S. Liang, D. Zheng, C. Zhang, and M. Zacharias, "Prediction of antigenic epitopes on protein surfaces by consensus scoring," BMC Bioinformatics, vol. 10, article 302, 2009.
-
(2009)
BMC Bioinformatics
, vol.10
-
-
Liang, S.1
Zheng, D.2
Zhang, C.3
Zacharias, M.4
-
23
-
-
84455203888
-
Prediction of antigen epitopes on protein surfaces based on support vector machine
-
P. Sun, W. Chen, X. Wang, B. Liu, and Y. Lv, "Prediction of antigen epitopes on protein surfaces based on support vector machine," Advanced Materials Research, vol. 393-395, pp. 884-889, 2012.
-
(2012)
Advanced Materials Research
, vol.393-395
, pp. 884-889
-
-
Sun, P.1
Chen, W.2
Wang, X.3
Liu, B.4
Lv, Y.5
-
24
-
-
33751099863
-
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
-
P. H. Andersen, M. Nielsen, and O. Lund, "Prediction of residues in discontinuous B-cell epitopes using protein 3D structures," Protein Science, vol. 15, no. 11, pp. 2558-2567, 2006.
-
(2006)
Protein Science
, vol.15
, Issue.11
, pp. 2558-2567
-
-
Andersen, P.H.1
Nielsen, M.2
Lund, O.3
-
25
-
-
34248594570
-
Identification of discontinuous antigenic determinants on proteins based on shape complementarities
-
R. Rapberger, A. Lukas, and B. Mayer, "Identification of discontinuous antigenic determinants on proteins based on shape complementarities," Journal of Molecular Recognition, vol. 20, no. 2, pp. 113-121, 2007.
-
(2007)
Journal of Molecular Recognition
, vol.20
, Issue.2
, pp. 113-121
-
-
Rapberger, R.1
Lukas, A.2
Mayer, B.3
-
26
-
-
0033954256
-
The protein data bank
-
H.M. Berman, J. Westbrook, Z. Feng et al., "The protein data bank," Nucleic Acids Research, vol. 28, no. 1, pp. 235-242, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
-
27
-
-
78649472709
-
MimoDB: A new repository for mimotope data derived from phage display technology
-
B. Ru, J. Huang, P. Dai et al., "MimoDB: a new repository for mimotope data derived from phage display technology," Molecules, vol. 15, no. 11, pp. 8279-8288, 2010.
-
(2010)
Molecules
, vol.15
, Issue.11
, pp. 8279-8288
-
-
Ru, B.1
Huang, J.2
Dai, P.3
-
28
-
-
79959578148
-
Epitope prediction based on randompeptide library screening: Benchmark dataset and prediction tools evaluation
-
P. Sun, W. Chen, Y. Huang, H. Wang, Z. Ma, and Y. Lv, "Epitope prediction based on randompeptide library screening: benchmark dataset and prediction tools evaluation," Molecules, vol. 16, no. 6, pp. 4971-4993, 2011.
-
(2011)
Molecules
, vol.16
, Issue.6
, pp. 4971-4993
-
-
Sun, P.1
Chen, W.2
Huang, Y.3
Wang, H.4
Ma, Z.5
Lv, Y.6
-
29
-
-
76749092270
-
TheWEKAdata mining software: An update
-
M. Hall, E. Frank, G. Holmes, B. Pfahringer, P. Reutemann, and I. H. Witte, "TheWEKAdata mining software: an update," ACM SIGKDD Explorations Newsletter, vol. 11, no. 1, pp. 10-18, 2009.
-
(2009)
ACM SIGKDD Explorations Newsletter
, vol.11
, Issue.1
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
Witte, I.H.6
-
30
-
-
79955702502
-
LIBSVM: A library for support vector machines
-
article 27
-
C.-C. Chang and C.-J. Lin, "LIBSVM: a library for support vector machines," ACM Transactions on Intelligent Systems and Technology, vol. 2, no. 3, article 27, 2011.
-
(2011)
ACM Transactions on Intelligent Systems and Technology
, vol.2
, Issue.3
-
-
Chang, C.-C.1
Lin, C.-J.2
-
31
-
-
1842526090
-
ProMate: A structure based prediction program to identify the location of proteinprotein binding sites
-
H. Neuvirth, R. Raz, and G. Schreiber, "ProMate: A structure based prediction program to identify the location of proteinprotein binding sites," Journal ofMolecular Biology, vol. 338, no. 1, pp. 181-199, 2004.
-
(2004)
Journal OfMolecular Biology
, vol.338
, Issue.1
, pp. 181-199
-
-
Neuvirth, H.1
Raz, R.2
Schreiber, G.3
-
32
-
-
33751092399
-
A block-based support vector machine approach to the protein homology prediction task in kdd cup 2004
-
Y. Fu, R. Sun, Q. Yang et al., "A block-based support vector machine approach to the protein homology prediction task in kdd cup 2004," ACM SIGKDD Explorations Newsletter, vol. 2, no. 6, pp. 120-124, 2004.
-
(2004)
ACM SIGKDD Explorations Newsletter
, vol.2
, Issue.6
, pp. 120-124
-
-
Fu, Y.1
Sun, R.2
Yang, Q.3
|