-
1
-
-
21344440326
-
The design and implementation of the immune epitope database and analysis resource
-
DOI 10.1007/s00251-005-0803-5
-
Peters, B.; Sidney, J.; Bourne, P.; Bui, H.H.; Buus, S.; Doh, G.; Fleri, W.; Kronenberg, M.; Kubo, R.; Lund, O.; Nemazee, D.; Ponomarenko, J.V.; Sathiamurthy, M.; Schoenberger, S.P.; Stewart, S.; Surko, P.; Way, S.; Wilson, S.; Sette, A. The design and implementation of the immune epitope database and analysis resource. Immunogenetics 2005, 57, 326-336. (Pubitemid 40905051)
-
(2005)
Immunogenetics
, vol.57
, Issue.5
, pp. 326-336
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.-H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
Nemazee, D.11
Ponomarenko, J.V.12
Sathiamurthy, M.13
Schoenberger, S.P.14
Stewart, S.15
Surko, P.16
Way, S.17
Wilson, S.18
Sette, A.19
-
2
-
-
0035699903
-
Antigenicity and immunogenicity of synthetic peptides
-
DOI 10.1006/biol.2001.0308
-
Van Regenmortel, M.H. Antigenicity and immunogenicity of synthetic peptides. Biologicals 2001, 29, 209-213. (Pubitemid 34093642)
-
(2001)
Biologicals
, vol.29
, Issue.3-4
, pp. 209-213
-
-
Van Regenmortel, M.H.V.1
-
3
-
-
0022446684
-
Continuous and discontinuous protein antigenic determinants
-
Barlow, D.J.; Edwards, M.S.; Thornton, J.M. Continuous and discontinuous protein antigenic determinants. Nature 1986, 322, 747-748. (Pubitemid 16074126)
-
(1986)
Nature
, vol.322
, Issue.6081
, pp. 747-748
-
-
Barlow, D.J.1
Edwards, M.S.2
Thornton, J.M.3
-
4
-
-
0035358814
-
Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics
-
DOI 10.1016/S1367-5931(00)00208-8
-
Irving, M.B.; Pan, O.; Scott, J.K. Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics. Curr. Opin. Chem. Biol. 2001, 5, 314-324. (Pubitemid 32718529)
-
(2001)
Current Opinion in Chemical Biology
, vol.5
, Issue.3
, pp. 314-324
-
-
Irving, M.B.1
Pan, O.2
Scott, J.K.3
-
6
-
-
33947583492
-
Synthetic peptides for the immunodiagnosis of human diseases
-
DOI 10.2174/092986707780059698
-
Gomara, M.J.; Haro, I. Synthetic peptides for the immunodiagnosis of human diseases. Curr. Med. Chem. 2007, 14, 531-546. (Pubitemid 46477726)
-
(2007)
Current Medicinal Chemistry
, vol.14
, Issue.5
, pp. 531-546
-
-
Gomara, M.J.1
Haro, I.2
-
8
-
-
0033661024
-
Type-specific epitope locations revealed by X-ray crystallographic study of adenovirus type 5 hexon
-
Rus, J.J.; Burnett, R.M. Type-specific epitope locations revealed by X-ray crystallographic study of adenovirus type 5 hexon. Mol. Ther. 2000, 1, 3-4.
-
(2000)
Mol. Ther.
, vol.1
, pp. 3-4
-
-
Rus, J.J.1
Burnett, R.M.2
-
9
-
-
0034823890
-
Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor
-
DOI 10.1021/ja0100120
-
Mayer, M.; Meyer, B. Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor. J. Am. Chem. Soc. 2001, 123, 6108-6117. (Pubitemid 32888480)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.25
, pp. 6108-6117
-
-
Mayer, M.1
Meyer, B.2
-
10
-
-
58049187138
-
ElliPro: A new structure-based tool for the prediction of antibody epitopes
-
Ponomarenko, J.; Bui, H.-H.; Li, W.; Fusseder, N.; Bourne, P.E.; Sette, A.; Peters, B. ElliPro: A new structure-based tool for the prediction of antibody epitopes. BMC Bioinformatics 2008, 9, 514.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 514
-
-
Ponomarenko, J.1
Bui, H.-H.2
Li, W.3
Fusseder, N.4
Bourne, P.E.5
Sette, A.6
Peters, B.7
-
11
-
-
0022467905
-
Antigenic determinants in proteins coincide with surface regions accessible to large probes (antibody domains)
-
Novotny, J.; Handschumacher, M.; Haber, E.; Bruccoleri, R.E.; Carlson, W.B.; Fanning, D.W.; Smith, J.A.; Rose, G.D. Antigenic determinants in proteins coincide with surface regions accessible to large probes (antibody domains). Proc. Natl. Acad. Sci. USA 1989, 83, 226-230. (Pubitemid 16079986)
-
(1986)
Proceedings of the National Academy of Sciences of the United States of America
, vol.83
, Issue.2
, pp. 226-230
-
-
Novotny, J.1
Handschumacher, M.2
Haber, E.3
-
13
-
-
0022249654
-
Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide
-
Emini, E.A.; Hughes, J.V.; Perlow, D.S.; Boger, J. Induction of hepatitis a virus-neutralizing antibody by a virus-specific synthetic peptide. J. Virol. 1985, 55, 836-839. (Pubitemid 16254565)
-
(1985)
Journal of Virology
, vol.55
, Issue.3
, pp. 836-839
-
-
Emini, E.A.1
Hughes, J.V.2
Perlow, D.S.3
Boger, J.4
-
14
-
-
0017873321
-
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
-
DOI 10.1016/0022-2836(78)90297-8
-
Garnier, J.; Osguthorpe, D.J.; Robson, B. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol. 1978, 120, 97-120. (Pubitemid 8312913)
-
(1978)
Journal of Molecular Biology
, vol.120
, Issue.1
, pp. 97-120
-
-
Garnier, J.1
Osguthorpe, D.J.2
Robson, B.3
-
15
-
-
0027156564
-
Correlation between the location of antigenic sites and the prediction of turns in proteins
-
DOI 10.1016/0165-2478(93)90072-A
-
Pellequer, J.L.; Westhof, E.; Van Regenmortel, M.H. Correlation between the location of antigenic sites and the prediction of turns in proteins. Immunol. Lett. 1993, 36, 83-99. (Pubitemid 23166298)
-
(1993)
Immunology Letters
, vol.36
, Issue.1
, pp. 83-99
-
-
Pellequer, J.-L.1
Westhof, E.2
Van Regenmortel, M.H.V.3
-
16
-
-
0018093765
-
Conformational preferences of amino acids in globular proteins
-
Levitt, M. Conformational preferences of amino acids in globular proteins. Biochemistry 1978, 17, 4277-4285. (Pubitemid 9037193)
-
(1978)
Biochemistry
, vol.17
, Issue.20
, pp. 4277-4285
-
-
Levitt, M.1
-
17
-
-
0015967881
-
Conformational parameters for amino acids in helical, beta-sheet, and
-
random coil regions calculated from proteins
-
Chou, P.Y.; Fasman, G.D. Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins. Biochemistry 1974, 13, 211-222.
-
(1974)
Biochemistry
, vol.13
, pp. 211-222
-
-
Chou, P.Y.1
Fasman, G.D.2
-
18
-
-
11144246404
-
Benchmarking B cell epitope prediction: Underperformance of existing methods
-
DOI 10.1110/ps.041059505
-
Blythe, M.J.; Flower, D.R. Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci. 2005, 14, 246-248. (Pubitemid 40054138)
-
(2005)
Protein Science
, vol.14
, Issue.1
, pp. 246-248
-
-
Blythe, M.J.1
Flower, D.R.2
-
19
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
Larsen, J.E.; Lund, O.; Nielsen, M. Improved method for predicting linear B-cell epitopes. Immunome Res. 2006, 2, 2.
-
(2006)
Immunome Res.
, vol.2
, pp. 2
-
-
Larsen, J.E.1
Lund, O.2
Nielsen, M.3
-
20
-
-
33748254730
-
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
-
DOI 10.1002/prot.21078
-
Saha, S.; Raghava, G.P. Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins 2006, 65, 40-48. (Pubitemid 44320614)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 40-48
-
-
Saha, S.1
Raghava, G.P.S.2
-
21
-
-
0038526303
-
ZDOCK: An initial-stage protein-docking algorithm
-
DOI 10.1002/prot.10389
-
Chen, R.; Li, L.; Weng, Z. ZDOCK: An initial-stage protein-docking algorithm. Proteins 2003, 52, 80-87. (Pubitemid 36648854)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.52
, Issue.1
, pp. 80-87
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
22
-
-
34248581488
-
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools
-
DOI 10.1002/jmr.815
-
Greenbaum, J.A.; Andersen, P.H.; Blythe, M.; Bui, H.H.; Cachau, R.E.; Crowe, J.; Davies, M. Kolaskar, A.S.; Lund, O.; Morrison, S.; Mumey, B.; Ofran, Y.; Pellequer, J.L.; Pinilla, C.; Ponomarenko, J.V.; Raghava, G.P.; van, Regenmortel, M.H.; Roggen, E.L.; Sette, A.; Schlessinger, A.; Sollner, J.; Zand, M.; Peters, B. Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. J. Mol. Recognit. 2007, 20, 75-82. (Pubitemid 46761248)
-
(2007)
Journal of Molecular Recognition
, vol.20
, Issue.2
, pp. 75-82
-
-
Greenbaum, J.A.1
Andersen, P.H.2
Blythe, M.3
Bui, H.-H.4
Cachau, R.E.5
Crowe, J.6
Davies, M.7
Kolaskar, A.S.8
Lund, O.9
Morrison, S.10
Mumey, B.11
Ofran, Y.12
Pellequer, J.-L.13
Pinilla, C.14
Ponomarenko, J.V.15
Raghava, G.P.S.16
Van Regenmortel, M.H.V.17
Roggen, E.L.18
Sette, A.19
Schlessinger, A.20
Sollner, J.21
Zand, M.22
Peters, B.23
more..
-
23
-
-
0021251243
-
Correlation between segmental mobility and the location of antigenic determinants in proteins
-
Westhof, E.; Altschuh, D.; Moras, D.; Bloomer, A.C.; Mondragon, A.; Klug, A.; Van Regenmortel, M.H. Correlation between segmental mobility and the location of antigenic determinants in proteins. Nature 1984, 311, 123-126. (Pubitemid 14072200)
-
(1984)
Nature
, vol.311
, Issue.5982
, pp. 123-126
-
-
Westhof, E.1
Altschuh, D.2
Moras, D.3
-
24
-
-
0021161723
-
The reactivity of anti-peptide antibodies is a function of the atomic mobility of sites in a protein
-
DOI 10.1038/312127a0
-
Tainer, J.A.; Getzoff, E.D.; Alexander, H.; Houghten, R.A.; Olson, A.J.; Lerner, R.A.; Hendrickson, W.A. The reactivity of anti-peptide antibodies is a function of the atomic mobility of sites in a protein. Nature 1984, 312, 127-134. (Pubitemid 14000076)
-
(1984)
Nature
, vol.312
, Issue.5990
, pp. 127-134
-
-
Tainer, J.A.1
Getzoff, E.D.2
Alexander, H.3
-
25
-
-
0022668738
-
Location of 'continuous' antigenic determinants in the protruding regions of proteins
-
Thornton, J.M.; Edwards, M.S.; Taylor, W.R.; Barlow, D.J. Location of 'continuous' antigenic determinants in the protruding regions of proteins. Embo J. 1986, 5, 409-413.
-
(1986)
Embo J.
, vol.5
, pp. 409-413
-
-
Thornton, J.M.1
Edwards, M.S.2
Taylor, W.R.3
Barlow, D.J.4
-
26
-
-
0022519337
-
Three-dimensional structure of an antigen-antibody complex at 2.8 Å resolution
-
Amit, A.G.; Mariuzza, R.A.; Phillips, S.E.; Poljak, R.J. Three-dimensional structure of an antigenantibody complex at 2.8 Å resolution. Science 1986, 233, 747-753. (Pubitemid 16016225)
-
(1986)
Science
, vol.233
, Issue.4765
, pp. 747-753
-
-
Amit, A.G.1
Mariuzza, R.A.2
Phillips, S.E.V.3
Poljak, R.J.4
-
27
-
-
0038309585
-
SiteLight: Binding-site prediction using phage display libraries
-
DOI 10.1110/ps.0237103
-
Halperin, I.; Wolfson, H. SiteLight: Binding-site prediction using phage display libraries. Protein Sci. 2003, 12, 1344-1359. (Pubitemid 36759339)
-
(2003)
Protein Science
, vol.12
, Issue.7
, pp. 1344-1359
-
-
Halperin, I.1
Wolfson, H.2
Nussinov, R.3
-
28
-
-
0142236214
-
A New Method for Mapping Discontinuous Antibody Epitopes to Reveal Structural Features of Proteins
-
DOI 10.1089/10665270360688183
-
Mumey, B.M. A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins. J. Comput. Biol. 2003, 10, 555-567. (Pubitemid 37372166)
-
(2003)
Journal of Computational Biology
, vol.10
, Issue.3-4
, pp. 555-567
-
-
Mumey, B.M.1
Bailey, B.W.2
Kirkpatrick, B.3
Jesaitis, A.J.4
Angel, T.5
Dratz, E.A.6
-
29
-
-
23144457577
-
CEP: A conformational epitope prediction server
-
DOI 10.1093/nar/gki460
-
Kulkarni-Kale, U.; Bhosle, S.; Kolaskar, A.S. CEP: A conformational epitope prediction server. Nucleic Acids Res. 2005, 33, W168-W171. (Pubitemid 44529902)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Kulkarni-Kale, U.1
Bhosle, S.2
Kolaskar, A.S.3
-
30
-
-
33751099863
-
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
-
DOI 10.1110/ps.062405906
-
Andersen, P.H.; Nielsen, M.; Lund, O. Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. Protein Sci. 2006, 15, 2558-2567. (Pubitemid 44771693)
-
(2006)
Protein Science
, vol.15
, Issue.11
, pp. 2558-2567
-
-
Andersen, P.H.1
Nielsen, M.2
Lund, O.3
-
31
-
-
0021818675
-
Filamentous fusion phage: Novel expression vectors that display cloned antigens on the virion surface
-
Smith, G.P. Filamentous fusion phage: Novel expression vectors that display cloned antigens on the virion surface. Science 1985, 228, 1315-1317. (Pubitemid 15000355)
-
(1985)
Science
, vol.228
, Issue.4705
, pp. 1315-1317
-
-
Smith, G.P.1
-
32
-
-
0037059461
-
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
-
DOI 10.1126/science.1064987
-
Tong, A.H.Y.; Drees, B.; Nardelli, G.; Bader, G.D.; Brannetti, B.; Castagnoli, L.; Evangelista, M.; Ferracuti, S.; Nelson, B.; Paoluzi, S.; Quondam, M.; Zucconi, A.; Hogue, C.W.; Fields, S.; Boone, C.; Cesareni, G. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science 2002, 295, 321-324. (Pubitemid 34074361)
-
(2002)
Science
, vol.295
, Issue.5553
, pp. 321-324
-
-
Tong, A.H.Y.1
Drees, B.2
Nardelli, G.3
Bader, G.D.4
Brannetti, B.5
Castagnoli, L.6
Evangelista, M.7
Ferracuti, S.8
Nelson, B.9
Paoluzi, S.10
Quondam, M.11
Zucconi, A.12
Hogue, C.W.V.13
Fields, S.14
Boone, C.15
Cesareni, G.16
-
33
-
-
33646725723
-
Minter Probing a protein-protein interaction by in vitro evolution
-
Thom, G.; Cockroft, A.C.; Buchanan, A.G.; Candotti, C.J.; Cohen, E.S.; Lowne, D.; Monk, P.; Shorrock-Hart, C.P.; Lutz, J.; Ralph, R. Minter Probing a protein-protein interaction by in vitro evolution. Proc. Natl. Acad. Sci. USA 2006, 103, 7619-7624.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 7619-7624
-
-
Thom, G.1
Cockroft, A.C.2
Buchanan, A.G.3
Candotti, C.J.4
Cohen, E.S.5
Lowne, D.6
Monk, P.7
Shorrock-Hart, C.P.8
Lutz, J.9
Ralph, R.10
-
34
-
-
0346494733
-
Epitope identification and discovery using phage display libraries: Applications in vaccine development and diagnostics
-
Wang, L.F.; Yu, M. Epitope identification and discovery using phage display libraries: Applications in vaccine development and diagnostics. Curr. Drug Targets 2004, 5, 1-15. (Pubitemid 38081739)
-
(2004)
Current Drug Targets
, vol.5
, Issue.1
, pp. 1-15
-
-
Wang, L.-F.1
Yu, M.2
-
35
-
-
60849117841
-
Phage display derived therapeutic antibodies
-
Thie, H.; Meyer, T.; Schirrmann, T.; Hust, M.; Dubel, S. Phage display derived therapeutic antibodies. Curr. Pharm. Biotechnol. 2008, 9, 439-446.
-
(2008)
Curr. Pharm. Biotechnol.
, vol.9
, pp. 439-446
-
-
Thie, H.1
Meyer, T.2
Schirrmann, T.3
Hust, M.4
Dubel, S.5
-
36
-
-
0022646579
-
A priori delineation of a peptide which mimics a discontinuous antigenic determinant
-
DOI 10.1016/0161-5890(86)90081-7
-
Geysen, H.M.; Rodda, S.J.; Mason, T.J. A priori delineation of a peptide which mimics a discontinuous antigenic determinant. Mol. Immunol. 1986, 23, 709-715. (Pubitemid 16094062)
-
(1986)
Molecular Immunology
, vol.23
, Issue.7
, pp. 709-715
-
-
Geysen, H.M.1
Rodda, S.J.2
Mason, T.J.3
-
37
-
-
33646150213
-
Discontinuous epitope prediction based on mimotope analysis
-
Moreau, V.; Granier, C.; Villard, S.; Laune, D.; Molina, F. Discontinuous epitope prediction based on mimotope analysis. Bioinformatics 2006, 22, 1088-1095.
-
(2006)
Bioinformatics
, vol.22
, pp. 1088-1095
-
-
Moreau, V.1
Granier, C.2
Villard, S.3
Laune, D.4
Molina, F.5
-
38
-
-
33750341091
-
MIMOX: A web tool for phage display based epitope mapping
-
Huang, J.; Gutteridge, A.; Honda, W.; Kanehisa, M. MIMOX: A web tool for phage display based epitope mapping. BMC Bioinformatics 2006, 10, 1-10.
-
(2006)
BMC Bioinformatics
, vol.10
, pp. 1-10
-
-
Huang, J.1
Gutteridge, A.2
Honda, W.3
Kanehisa, M.4
-
39
-
-
20344405720
-
3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins
-
DOI 10.1002/jcc.20229
-
Schreiber, A.; Humbert, M.; Benz, A.; Dietrich, U. 3D-Epitope-Explorer (3DEX): Localization of Conformational Epitopes within Three-Dimensional Structures of Proteins. J. Comput. Chem. 2005, 26, 879-887. (Pubitemid 40860391)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.9
, pp. 879-887
-
-
Schreiber, A.1
Humbert, M.2
Benz, A.3
Dietrich, U.4
-
40
-
-
34249886331
-
Stepwise prediction of conformational discontinuous B-cell epitopes using the mapitope algorithm
-
DOI 10.1002/prot.21387
-
Bublil, E.M.; Freund, N.T.; Mayrose, I.; Penn, O. Roitburd-berman, A.; Rubinstein, N.D.; Pupko, T.; Gershoni, J.M. Stepwise Prediction of Conformational Discontinuous B-Cell Epitopes Using the Mapitope Algorithm. Bioinformatics 2007, 304, 294-304. (Pubitemid 46871603)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.68
, Issue.1
, pp. 294-304
-
-
Bublil, E.M.1
Freund, N.T.2
Mayrose, I.3
Penn, O.4
Roitburd-Berman, A.5
Rubinstein, N.D.6
Pupko, T.7
Gershoni, J.M.8
-
41
-
-
33846672181
-
Epitope mapping using combinatorial phage-display libraries: A graph-based algorithm
-
DOI 10.1093/nar/gkl975
-
Mayrose, I.; Shlomi, T.; Rubinstein, N.D.; Gershoni, J.M.; Ruppin, E.; Sharan, R.; Pupko, T. Epitope mapping using combinatorial phage-display libraries: A graph-based algorithm. Nucleic Acids Res. 2007, 35, 69-78. (Pubitemid 46189832)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.1
, pp. 69-78
-
-
Mayrose, I.1
Shlomi, T.2
Rubinstein, N.D.3
Gershoni, J.M.4
Ruppin, E.5
Sharan, R.6
Pupko, T.7
-
42
-
-
60649084396
-
Pep-3D-Search: A method for B-cell epitope prediction based on mimotope analysis
-
Huang, Y.X.; Bao, Y.L.; Guo, S.Y.; Wang, Y.; Zhou, C.G.; Li, Y.X. Pep-3D-Search: A method for B-cell epitope prediction based on mimotope analysis. BMC Bioinformatics 2008, 9, 538.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 538
-
-
Huang, Y.X.1
Bao, Y.L.2
Guo, S.Y.3
Wang, Y.4
Zhou, C.G.5
Li, Y.X.6
-
43
-
-
36549031650
-
Pepitope: Epitope mapping from affinity-selected peptides
-
DOI 10.1093/bioinformatics/btm493
-
Mayrose, I.; Penn, O.; Erez, E.; Rubinstein, N.D.; Shlomi, T.; Freund, N.T.; Bublil, E.M.; Ruppin, E.; Sharan, R.; Gershoni, J.M.; Martz, E.; Pupko, T. Pepitope: epitope mapping from affinity-selected peptides. Bioinformatics 2007, 23, 3244-3246. (Pubitemid 350187529)
-
(2007)
Bioinformatics
, vol.23
, Issue.23
, pp. 3244-3246
-
-
Mayrose, I.1
Penn, O.2
Erez, E.3
Rubinstein, N.D.4
Shlomi, T.5
Freund, N.T.6
Bublil, E.M.7
Ruppin, E.8
Sharan, R.9
Gershoni, J.M.10
Martz, E.11
Pupko, T.12
-
44
-
-
69849095169
-
Automated detection of conformational epitopes using phage display peptide sequences
-
Negi, S.S.; Braun, W. Automated detection of conformational epitopes using phage display peptide sequences. Bioinform. Biol. C 2009, 3, 71-81.
-
(2009)
Bioinform. Biol. C
, vol.3
, pp. 71-81
-
-
Negi, S.S.1
Braun, W.2
-
45
-
-
0142195767
-
The mapping and reconstitution of a conformational discontinuous B-cell epitope of HIV-1
-
DOI 10.1016/j.jmb.2003.09.002
-
Enshell-Seijffers, D.; Denisov, D.; Groisman, B.; Smelyanski, L.; Meyuhas, R.; Gross, G.; Denisova, G.; Gershoni, J.M. The mapping and reconstitution of a conformational discontinuous B-cell epitope of HIV-1. J. Mol. Biol. 2003, 334, 87-101. (Pubitemid 37330102)
-
(2003)
Journal of Molecular Biology
, vol.334
, Issue.1
, pp. 87-101
-
-
Enshell-Seijffers, D.1
Denisov, D.2
Groisman, B.3
Smelyanski, L.4
Meyuhas, R.5
Gross, G.6
Denisova, G.7
Gershoni, J.M.8
-
46
-
-
34248178912
-
The MEPS server for identifying protein conformational epitopes
-
Castrignanò, T.; D'Onorio De Meo, P.; Carrabino, D.; Orsini, M.; Floris, M.; Tramontano, A. The MEPS server for identifying protein conformational epitopes. BMC Bioinformatics 2007, 8, S6.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Castrignanò, T.1
D'Onorio De Meo, P.2
Carrabino, D.3
Orsini, M.4
Floris, M.5
Tramontano, A.6
-
47
-
-
78649472709
-
A new repository for mimotope data derived from phage display technology
-
Ru, B.; Huang, J.; Dai, P.; Li, S.; Xia, Z.; Ding, H.; Lin, H.; Guo, F.B.; Wang, X. MimoDB: A New Repository for Mimotope Data Derived from Phage Display Technology. Molecules 2010, 15, 8279-8288.
-
(2010)
Molecules
, vol.15
, pp. 8279-8288
-
-
Ru, B.1
Huang, J.2
Dai, P.3
Li, S.4
Xia, Z.5
Ding, H.6
Lin, H.7
Guo, F.B.8
Wang, X.9
Mimo, D.B.10
-
48
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.N.; Weissig, H.; Shindyalov, I.N.; Bourne, P.E. The Protein Data Bank. Nucleic Acids Res. 2000, 28, 235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
49
-
-
79959579671
-
-
NACCESS Computer Program. Available online, (accessed on 2 February
-
Hubbard, S.J. NACCESS Computer Program. Available online: http://www.bioinf.manchester.ac.uk/ naccess/ (accessed on 2 February 2011).
-
(2011)
-
-
Hubbard, S.J.1
-
50
-
-
0037197254
-
Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
-
DOI 10.1002/jcc.10061
-
Tsodikov, O.V.; Record, M.T.J.; Sergeev, Y.V. A novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature. J. Comput. Chem. 2002, 23, 600-609. (Pubitemid 34312083)
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.6
, pp. 600-609
-
-
Tsodikov, O.V.1
Thomas Record Jr., M.2
Sergeev, Y.V.3
-
51
-
-
37749042370
-
Antibody-protein interactions: Benchmark datasets and prediction tools evaluation
-
Ponomarenko, J.V.; Bourne, P.E. Antibody-protein interactions: Benchmark datasets and prediction tools evaluation. BMC Struct. Biol. 2007, 7, 64.
-
(2007)
BMC Struct. Biol.
, vol.7
, pp. 64
-
-
Ponomarenko, J.V.1
Bourne, P.E.2
-
52
-
-
33746456834
-
CED: A conformational epitope database
-
Huang, J.; Honda, W. CED: A conformational epitope database. BMC Immunol. 2006, 7, 7.
-
(2006)
BMC Immunol.
, vol.7
, pp. 7
-
-
Huang, J.1
Honda, W.2
-
53
-
-
78651329115
-
IEDB-3D: Structural data within the immune epitope database
-
Ponomarenko, J.; Papangelopoulos, M.; Zajonc, D.M.; Peters, B.; Sette, A.; Bourne, P.E. IEDB-3D: structural data within the immune epitope database. Nucleic Acids Res. 2010, 39, D1164-D1170.
-
(2010)
Nucleic Acids Res.
, vol.39
-
-
Ponomarenko, J.1
Papangelopoulos, M.2
Zajonc, D.M.3
Peters, B.4
Sette, A.5
Bourne, P.E.6
-
54
-
-
23144462926
-
SPACE: A suite of tools for protein structure prediction and analysis based on complementarity and environment
-
DOI 10.1093/nar/gki398
-
Sobolev, V.; Eyal, E.; Gerzon, S.; Potapov, V.; Babor, M.; Prilusky. J.; Edelman, M. SPACE: A suite of tools for protein structure prediction and analysis based on complementarity and environment. Nucleic Acids Res. 2005, 33, W39-W43. (Pubitemid 44529877)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Sobolev, V.1
Eyal, E.2
Gerzon, S.3
Potapov, V.4
Bapor, M.5
Prilusky, J.6
Edelman, M.7
-
55
-
-
70449408296
-
Prediction of antigenic epitopes on protein surfaces by consensus scoring
-
Shide, L.; Dandan, Z.; Chi, Z.; Martin, Z. Prediction of antigenic epitopes on protein surfaces by consensus scoring. BMC Bioinformatics 2009, 10, 302.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 302
-
-
Shide, L.1
Dandan, Z.2
Chi, Z.3
Martin, Z.4
|