Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil

Journal of Microbiology

Volumn 53, Issue 7, 2015, Pages 429-434

  Lee, Jae Jin ^a   Kang, Myung Suk ^b   Joo, Eun Sun ^a   Kim, Myung Kyum ^a   Im, Wan Taek ^c   Jung, Hee Young ^d   Srinivasan, Sathiyaraj ^a  

^a Seoul Women University   (South Korea)

^b National Institute of Biological Resources   (South Korea)

^c Hankyong National University   (South Korea)

^d Kyungpook National University   (South Korea)

Author keywords

Cytophagaceae; radiation resistant; Spirosoma montaniterrae; taxonomy

Indexed keywords

BACTERIA (MICROORGANISMS); FLEXIBACTERACEAE; NEGIBACTERIA; SPIROSOMA;

FARNOQUINONE; RIBOSOME DNA; RNA 16S; VITAMIN MK 7;

ALTITUDE; ANALOGS AND DERIVATIVES; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; FLEXIBACTERACEAE; GAMMA RADIATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHENOTYPE; PHYLOGENY; RADIATION RESPONSE; RADIATION TOLERANCE; SOUTH KOREA; ULTRAVIOLET RADIATION;

ALTITUDE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CYTOPHAGACEAE; DNA, RIBOSOMAL; GAMMA RAYS; PHENOTYPE; PHYLOGENY; RADIATION TOLERANCE; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; ULTRAVIOLET RAYS; VITAMIN K 2;

EID: 84932633066     PISSN: 12258873     EISSN: 19763794     Source Type: Journal    
DOI: 10.1007/s12275-015-5008-5     Document Type: Article

References (40)

1. Ahn J.H., Weon H.Y., Kim S.J., Hong S.B., Seok S.J., and Kwon S.W. 2014. Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma. Int. J. Syst. Evol. Microbiol.64, 3230–3234.
2. Baik K.S., Kim M.S., Park S.C., Lee D.W., Lee S.D., Ka J.O., Choi S.K., and Seong C.N. 2007. Spirosoma rigui sp. nov., isolated from fresh water. Int. J. Syst. Evol. Microbiol.57, 2870–2873.
3. Bernardet J.F., Nakagawa Y., and Holmes B. 2002. Proposed minimal standards for describing new taxa of the family Flavo-bacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol.64, 2233–2237.
4. Chang X., Jiang F., Wang T., Kan W., Qu Z., Ren L., Fang C., and Peng F. 2014. Spirosoma arcticum sp. nov., isolated from high Arctic glacial till. Int. J. Syst. Evol. Microbiol.64, 2233–2237.
5. Collins M.D. and Jones D. 1981. Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol. Rev.45, 316–354.
6. Daly M.J. 2009. A new perspective on radiation resistance based on Deinococcus radiodurans. Nat. Rev. Microbiol.7, 237–245.
7. Doetsch R.N. 1981. Determinative methods of light microscopy. Manual of Methods for General Bacteriology, pp. 21–33. In Gerhardt P., Murray R.G.E., Costilow R.N., Nester E.W., Wood W.A., Krieg N.R., and Phillips G.H. (eds.), American Society for Microbiology. Washington D.C., USA.
8. Felsenstein J. 1985. Confidence limit on phylogenies: an approach using the bootstrap. Evolution39, 783–791.
9. Finster K.W., Herbert R.A., and Lomstein B.A. 2009. Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma. Int. J. Syst. Evol. Microbiol.59, 839–844.
10. Fitch W.M. 1971. Toward defining the course of evolution: minimum change for a specified tree topology. Syst. Zool.20, 406–416.
11. Fries J., Pfeiffer S., Kuffner M., and Sessitsch A. 2013. Spirosoma endophyticum sp. nov., isolated from Zn- and Cd-accumulating Salix caprea. Int. J. Syst. Evol. Microbiol.63, 4586–4590.
12. Gosink J.J., Woese C.R., and Staley J.T. 1998. Polaribactger gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polare marine bacteria of the Cytophaga-Flavobacterium-Bactgerodes group and reclassification of ‘Flectobacillus glomeraatus’ as Polaribacer glomeratus comb. nov. Int. J. Syst. Bacteriol.48, 223–235.
13. Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser.41, 95–98.
14. Ignacio R.M., Yoon Y.S., Sajo M.E.J., Kim C.S., Kim D.H., Kim S.K., and Lee K.J. 2013. The balneotherapy effect of hydrogen reduced water on UVB-mediated skin injury in hairless mice. Mol. Cell. Toxicol.9, 15–21.
15. Im W.T., Jung H.M., Ten L.N., Kim M.K., Bora N., Goodfellow M., Lim S., Jung J., and Lee S.T. 2008. Deinococcus aquaticus sp. nov., isolated from fresh water, and Deinococcus caeni sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol.58, 2348–2353.
16. Im S., Song D., Joe M., Kim D., Park D.H., and Lim S. 2013. Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents. Bioprocess Biosyst. Eng.36, 781–789.
17. Kampfer P., Lodders N., Huber B., Falsen E., and Busse H.J. 2008. Deinococcus aquatilis sp. nov., isolated from water. Int. J. Syst. Evol. Microbiol.58, 2803–2806.
18. Kang M.S., Yu S.L., Kim H.Y., Lim H.S., and Lee S.K. 2013. SPT4 increases UV-induced mutagenesis in yeast through impaired nucleotide excision repair. Mol. Cell. Toxicol.9, 37–43.
19. Kim O.S., Cho Y.J., Lee K., Yoon S.H., Kim M., Na H., Park S.C., Jeon Y.S., Lee J.H., Yi H., et al. 2012. Introducing Ez-Taxon-e: A prokaryotic 16S RNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol.62, 716–721.
20. Kimura M. 1983. The neutral theory of molecular evolution. Cambridge: Cambridge University Press.
21. Komagata K. and Suzuki K. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol.19, 161–207.
22. Larkin J.M. and Borrall R. 1984. Family 1. Spirosomaceae Larkin and Borrall 1978 595AL. In Bergey’s Manual of Systematic Bacteriology Vol. 1, pp. 125–132.
23. Lee J.J., Srinivasan S., Lim S., Joe M., Im S., Bae S.I., Park K.R., Han J.H., Park S.H., Joo B.M., et al. 2014. Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil. Curr. Microbiol.69, 286–291.
24. Lim S., Song D., Joe M., and Kim D. 2012. Development of a qualitative dose indicator for gamma radiation using lyophilized Deinococcus. J. Microbiol. Biotechnol.22, 1296–1300.
25. Mesbah M., Premachandran U., and Whitman W.B. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol.39, 159–167.
26. Minnikin D.E., O’Donnell A.G., Goodfellow M., Alderson G., Athalye M., Schaal A., and Parlett J.H. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods2, 233–241.
27. Rainey F.A., Ray K., Ferreira M., Gatz B.Z., Nobre M.F., Bagaley D., Rash B.A., Park M.J., Earl A.M., Shank N.C., et al. 2005. Extensive diversity of ionizing-radiation-resistant bacteria recovered from sonoran desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample. Appl. Environ. Microbiol.71, 5225–5235.
28. Saitou N. and Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol.4, 406–425.
29. Sasser M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark D.E., USA.
30. Selvam K., Duncan J.R., Tanaka M., and Battista J.R. 2013. DdrA, DdrD, and PprA: Components of UV and mitomycin C resistance in Deinococcus radiodurans R1. PLoS One8, e69007.
31. Shin Y.K., Lee J.S., Chun C.O., Kim H.J., and Park Y.H. 1996. Isoprenoid quinone profiles of the Leclercia adecarboxylata KCTC 1036T. J. Microbiol. Biotechnol.6, 68–69.
32. Srinivasan S., Kim M.K., Lim S., Joe M., and Lee M. 2012a. Deinococcus daejeonensis sp. nov., isolated from sludge in a sewage disposal plant. Int. J. Syst. Evol. Microbiol.62, 1265–1270.
33. Srinivasan S., Lee J.J., Lim S., Joe M., and Kim M.K. 2012b. Deinococcus humi sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol.62, 2844–2850.
34. Srinivasan S., Lee J.J., Lim S.Y., Joe M.H., Im S.H., and Kim M.K. 2014. Deinococcus radioresistens sp. nov., a UV and gamma radiation- resistant bacterium isolated from mountain soil. Antonie van Leeuwenhoek107, 539–545.
35. Tamaoka J. and Komagata K. 1984. Determination of DNA base composition by reversed phase high-performance liquid chromatography. FEMS Microbiol. Lett.25, 125–128.
36. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., and Kumar S. 2011. Mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol.28, 2731–2739.
37. Ten, L.N., Xu, J.L., Jin, F.X., Im, W.T., Oh, H.M., and Lee, S.T. 2009. Spirosoma panaciterrae sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol.59, 331–335.
38. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res.24, 4876–4882.
39. Weeks, O.B. 1981. Preliminary studies of the pigments of Flavobacterium breve NCTC 11099 and Flavobacterium odoratum NCTC 11036. In Reichenbach, H. and Weeks, O.B. (eds.) The Flavobacterium-Cytophaga group, Gesellschaft für Biotechnologische For-schung GmbH, pp. 108–114.
40. Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol.173, 697–703.