메뉴 건너뛰기




Volumn 11, Issue 6, 2015, Pages 658-671

Convergent genetic and expression data implicate immunity in Alzheimer's disease

(187)  Jones, Lesley a   Lambert, Jean Charles b,c,d   Wang, Li San q   Choi, Seung Hoan h   Harold, Denise an   Vedernikov, Alexey a   Escott Price, Valentina a   Stone, Timothy a   Richards, Alexander a   Bellenguez, Céline b,c,d   Ibrahim Verbaas, Carla A e   Naj, Adam C f   Sims, Rebecca a   Gerrish, Amy a   Jun, Gyungah g,h   DeStefano, Anita L h   Bis, Joshua C i   Beecham, Gary W f   Grenier Boley, Benjamin b,c,d   Russo, Giancarlo j   more..

b INSERM   (France)

Author keywords

ALIGATOR; Alzheimer's disease; Cholesterol metabolism; Dementia; Endocytosis; Immune response; Neurodegeneration; Pathway analysis; Ubiquitination; Weighted gene co expression network analysis

Indexed keywords

CLATHRIN; PROTEASOME; TRANSCRIPTION FACTOR AP 2; UBIQUITIN;

EID: 84931560814     PISSN: 15525260     EISSN: 15525279     Source Type: Journal    
DOI: 10.1016/j.jalz.2014.05.1757     Document Type: Article
Times cited : (156)

References (36)
  • 1
    • 0042023711 scopus 로고    scopus 로고
    • Alzheimer disease in the US population: Prevalence estimates using the 2000 census
    • L.E. Hebert, P.A. Scherr, J.L. Bienias, D.A. Bennett, and D.A. Evans Alzheimer disease in the US population: prevalence estimates using the 2000 census Arch Neurol 60 2003 1119 1122
    • (2003) Arch Neurol , vol.60 , pp. 1119-1122
    • Hebert, L.E.1    Scherr, P.A.2    Bienias, J.L.3    Bennett, D.A.4    Evans, D.A.5
  • 4
    • 84888317489 scopus 로고    scopus 로고
    • Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease
    • J.C. Lambert, C.A. Ibrahim-Verbaas, D. Harold, A.C. Naj, R. Sims, C. Bellenguez, et al. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease Nat Genet 45 2013 1452 1458
    • (2013) Nat Genet , vol.45 , pp. 1452-1458
    • Lambert, J.C.1    Ibrahim-Verbaas, C.A.2    Harold, D.3    Naj, A.C.4    Sims, R.5    Bellenguez, C.6
  • 5
    • 67651180986 scopus 로고    scopus 로고
    • The amyloid hypothesis for Alzheimer's disease: A critical reappraisal
    • J. Hardy The amyloid hypothesis for Alzheimer's disease: a critical reappraisal J Neurochem 110 2009 1129 1134
    • (2009) J Neurochem , vol.110 , pp. 1129-1134
    • Hardy, J.1
  • 6
    • 84890125171 scopus 로고    scopus 로고
    • Alzheimer disease therapy-moving from amyloid-beta to tau
    • E. Giacobini, and G. Gold Alzheimer disease therapy-moving from amyloid-beta to tau Nature Reviews Neurology 9 2013 677 686
    • (2013) Nature Reviews Neurology , vol.9 , pp. 677-686
    • Giacobini, E.1    Gold, G.2
  • 8
    • 70349558522 scopus 로고    scopus 로고
    • Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease
    • D. Harold, R. Abraham, P. Hollingworth, R. Sims, A. Gerrish, and M.L. Hamshere Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease Nat Genet 41 2009 1088 1093
    • (2009) Nat Genet , vol.41 , pp. 1088-1093
    • Harold, D.1    Abraham, R.2    Hollingworth, P.3    Sims, R.4    Gerrish, A.5    Hamshere, M.L.6
  • 9
    • 84873031286 scopus 로고    scopus 로고
    • Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis
    • S.H. Lee, D. Harold, D.R. Nyholt Consortium AN C. International Endogene, Genetic, et al. Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis Hum Mol Genet 22 2013 832 841
    • (2013) Hum Mol Genet , vol.22 , pp. 832-841
    • Lee, S.H.1    Harold, D.2    Nyholt, D.R.3
  • 10
    • 0027194791 scopus 로고
    • Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer's disease in late onset families
    • E.H. Corder, A.M. Saunders, W.J. Strittmatter, D.E. Schmechel, P.C. Gaskell, G.W. Small, et al. Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer's disease in late onset families Science 261 1993 921 923
    • (1993) Science , vol.261 , pp. 921-923
    • Corder, E.H.1    Saunders, A.M.2    Strittmatter, W.J.3    Schmechel, D.E.4    Gaskell, P.C.5    Small, G.W.6
  • 11
    • 79955841697 scopus 로고    scopus 로고
    • Evaluating the heritability explained by known susceptibility variants: A survey of ten complex diseases
    • H.C. So, A.H. Gui, S.S. Cherny, and P.C. Sham Evaluating the heritability explained by known susceptibility variants: a survey of ten complex diseases Genet Epidemiol 35 2011 310 317
    • (2011) Genet Epidemiol , vol.35 , pp. 310-317
    • So, H.C.1    Gui, A.H.2    Cherny, S.S.3    Sham, P.C.4
  • 13
    • 67649584052 scopus 로고    scopus 로고
    • Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder
    • P. Holmans, E.K. Green, J.S. Pahwa, M.A. Ferreira, S.M. Purcell, P. Sklar, et al. Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder Am J Hum Genet 85 2009 13 24
    • (2009) Am J Hum Genet , vol.85 , pp. 13-24
    • Holmans, P.1    Green, E.K.2    Pahwa, J.S.3    Ferreira, M.A.4    Purcell, S.M.5    Sklar, P.6
  • 14
    • 78649573450 scopus 로고    scopus 로고
    • Genetic evidence implicates the immune system and cholesterol metabolism in the aetiology of Alzheimer's disease
    • L. Jones, P.A. Holmans, M.L. Hamshere, D. Harold, V. Moskvina, D. Ivanov, et al. Genetic evidence implicates the immune system and cholesterol metabolism in the aetiology of Alzheimer's disease PloS One 5 2010 e13950
    • (2010) PloS One , vol.5
    • Jones, L.1    Holmans, P.A.2    Hamshere, M.L.3    Harold, D.4    Moskvina, V.5    Ivanov, D.6
  • 15
    • 0016746132 scopus 로고
    • Method for Combining Non-Independent, One-Sided Tests of Significance
    • M.B. Brown Method for Combining Non-Independent, One-Sided Tests of Significance Biometrics 31 1975 987 992
    • (1975) Biometrics , vol.31 , pp. 987-992
    • Brown, M.B.1
  • 17
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • P. Langfelder, and S. Horvath WGCNA: an R package for weighted correlation network analysis BMC Bioinformatics 9 2008 559
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 18
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • A.L. Price, N.J. Patterson, R.M. Plenge, M.E. Weinblatt, N.A. Shadick, and D. Reich Principal components analysis corrects for stratification in genome-wide association studies Nat Genet 38 2006 904 909
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 19
    • 0038054341 scopus 로고    scopus 로고
    • PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
    • V.K. Mootha, C.M. Lindgren, K.F. Eriksson, A. Subramanian, S. Sihag, J. Lehar, et al. PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes Nat Genet 34 2003 267 273
    • (2003) Nat Genet , vol.34 , pp. 267-273
    • Mootha, V.K.1    Lindgren, C.M.2    Eriksson, K.F.3    Subramanian, A.4    Sihag, S.5    Lehar, J.6
  • 21
    • 84876907931 scopus 로고    scopus 로고
    • Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease
    • B. Zhang, C. Gaiteri, L.G. Bodea, Z. Wang, J. McElwee, A.A. Podtelezhnikov, et al. Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease Cell 153 2013 707 720
    • (2013) Cell , vol.153 , pp. 707-720
    • Zhang, B.1    Gaiteri, C.2    Bodea, L.G.3    Wang, Z.4    McElwee, J.5    Podtelezhnikov, A.A.6
  • 22
    • 77954558670 scopus 로고    scopus 로고
    • Implication of the immune system in Alzheimer's disease: Evidence from genome-wide pathway analysis. Journal of Alzheimer's disease
    • J.C. Lambert, B. Grenier-Boley, V. Chouraki, S. Heath, D. Zelenika, N. Fievet, et al. Implication of the immune system in Alzheimer's disease: evidence from genome-wide pathway analysis. Journal of Alzheimer's disease J Atten Disord 20 2010 1107 1118
    • (2010) J Atten Disord , vol.20 , pp. 1107-1118
    • Lambert, J.C.1    Grenier-Boley, B.2    Chouraki, V.3    Heath, S.4    Zelenika, D.5    Fievet, N.6
  • 23
    • 79959886270 scopus 로고    scopus 로고
    • Amyloid precursor protein processing and Alzheimer's disease
    • R.J. O'Brien, and P.C. Wong Amyloid precursor protein processing and Alzheimer's disease Annu Rev Neurosci 34 2011 185 204
    • (2011) Annu Rev Neurosci , vol.34 , pp. 185-204
    • O'Brien, R.J.1    Wong, P.C.2
  • 24
    • 58149358871 scopus 로고    scopus 로고
    • Calponin in non-muscle cells
    • K.C. Wu, and J.P. Jin Calponin in non-muscle cells Cell Biochem Biophys 52 2008 139 148
    • (2008) Cell Biochem Biophys , vol.52 , pp. 139-148
    • Wu, K.C.1    Jin, J.P.2
  • 26
    • 84866537810 scopus 로고    scopus 로고
    • Apolipoprotein E enhances endothelial-NO production by modulating caveolin 1 interaction with endothelial NO synthase
    • L. Yue, J.T. Bian, I. Grizelj, A. Cavka, S.A. Phillips, A. Makino, et al. Apolipoprotein E enhances endothelial-NO production by modulating caveolin 1 interaction with endothelial NO synthase Hypertension 60 2012 1040 1046
    • (2012) Hypertension , vol.60 , pp. 1040-1046
    • Yue, L.1    Bian, J.T.2    Grizelj, I.3    Cavka, A.4    Phillips, S.A.5    Makino, A.6
  • 27
    • 84878770912 scopus 로고    scopus 로고
    • The human L-type calcium channel Cav1.3 regulates insulin release and polymorphisms in CACNA1D associate with type 2 diabetes
    • T.M. Reinbothe, S. Alkayyali, E. Ahlqvist, T. Tuomi, B. Isomaa, V. Lyssenko, et al. The human L-type calcium channel Cav1.3 regulates insulin release and polymorphisms in CACNA1D associate with type 2 diabetes Diabetologia 56 2013 340 349
    • (2013) Diabetologia , vol.56 , pp. 340-349
    • Reinbothe, T.M.1    Alkayyali, S.2    Ahlqvist, E.3    Tuomi, T.4    Isomaa, B.5    Lyssenko, V.6
  • 28
    • 84864471159 scopus 로고    scopus 로고
    • A mutation in APP protects against Alzheimer's disease and age-related cognitive decline
    • T. Jonsson, J.K. Atwal, S. Steinberg, J. Snaedal, P.V. Jonsson, S. Bjornsson, et al. A mutation in APP protects against Alzheimer's disease and age-related cognitive decline Nature 488 2012 96 99
    • (2012) Nature , vol.488 , pp. 96-99
    • Jonsson, T.1    Atwal, J.K.2    Steinberg, S.3    Snaedal, J.4    Jonsson, P.V.5    Bjornsson, S.6
  • 29
    • 84876217807 scopus 로고    scopus 로고
    • When is hub gene selection better than standard meta-analysis?
    • P. Langfelder, P.S. Mischel, and S. Horvath When is hub gene selection better than standard meta-analysis? PloS one 8 2013 e61505
    • (2013) PloS One , vol.8
    • Langfelder, P.1    Mischel, P.S.2    Horvath, S.3
  • 30
    • 80255135608 scopus 로고    scopus 로고
    • Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain
    • A. Kuhn, D. Thu, H.J. Waldvogel, R.L. Faull, and R. Luthi-Carter Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain Nature Methods 8 2011 945 947
    • (2011) Nature Methods , vol.8 , pp. 945-947
    • Kuhn, A.1    Thu, D.2    Waldvogel, H.J.3    Faull, R.L.4    Luthi-Carter, R.5
  • 31
    • 84884155361 scopus 로고    scopus 로고
    • Insights into TREM2 biology by network analysis of human brain gene expression data
    • P. Forabosco, A. Ramasamy, D. Trabzuni, R. Walker, C. Smith, J. Bras, et al. Insights into TREM2 biology by network analysis of human brain gene expression data Neurobiol Aging 34 2013 2699 2714
    • (2013) Neurobiol Aging , vol.34 , pp. 2699-2714
    • Forabosco, P.1    Ramasamy, A.2    Trabzuni, D.3    Walker, R.4    Smith, C.5    Bras, J.6
  • 32
    • 79960610118 scopus 로고    scopus 로고
    • REVIGO summarizes and visualizes long lists of gene ontology terms
    • F. Supek, M. Bosnjak, N. Skunca, and T. Smuc REVIGO summarizes and visualizes long lists of gene ontology terms PloS One 6 2011 e21800
    • (2011) PloS One , vol.6
    • Supek, F.1    Bosnjak, M.2    Skunca, N.3    Smuc, T.4
  • 33
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • W. Huang da, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nature Protocols 4 2009 44 57
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 34
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • W. Huang da, B.T. Sherman, and R.A. Lempicki Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Res 37 2009 1 13
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 35
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • P. Shannon, A. Markiel, O. Ozier, N.S. Baliga, J.T. Wang, D. Ramage, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks Genome Res 13 2003 2498 2504
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6
  • 36
    • 78649775562 scopus 로고    scopus 로고
    • Enrichment map: A network-based method for gene-set enrichment visualization and interpretation
    • D. Merico, R. Isserlin, O. Stueker, A. Emili, and G.D. Bader Enrichment map: a network-based method for gene-set enrichment visualization and interpretation PloS One 5 2010 e13984
    • (2010) PloS One , vol.5
    • Merico, D.1    Isserlin, R.2    Stueker, O.3    Emili, A.4    Bader, G.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.