메뉴 건너뛰기




Volumn 19, Issue , 2015, Pages 1-9

Performance of a next generation sequencing SNP assay on degraded DNA

Author keywords

Degraded DNA; InDel; Next generation sequencing; SNP; STR

Indexed keywords

DNA; MICROSATELLITE DNA;

EID: 84931270381     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2015.04.010     Document Type: Article
Times cited : (95)

References (23)
  • 1
    • 84857043139 scopus 로고    scopus 로고
    • Evaluation of three DNA extraction protocols for forensic STR typing after laser capture microdissection
    • M. Vandewoestyne, F. Van Nieuwerburgh, D. Van Hoofstat, and D. Deforce Evaluation of three DNA extraction protocols for forensic STR typing after laser capture microdissection Forensic Sci. Int. Genet. 6 2012 258 262
    • (2012) Forensic Sci. Int. Genet. , vol.6 , pp. 258-262
    • Vandewoestyne, M.1    Van Nieuwerburgh, F.2    Van Hoofstat, D.3    Deforce, D.4
  • 2
    • 48049124342 scopus 로고    scopus 로고
    • Direct comparison of post-28-cycle PCR purification and modified capillary electrophoresis methods with the 34-cycle "low copy number" (LCN) method for analysis of trace forensic DNA samples
    • L. Forster, J. Thomson, and S. Kutranov Direct comparison of post-28-cycle PCR purification and modified capillary electrophoresis methods with the 34-cycle "low copy number" (LCN) method for analysis of trace forensic DNA samples Forensic Sci. Int. Genet. 2 2008 318 328
    • (2008) Forensic Sci. Int. Genet. , vol.2 , pp. 318-328
    • Forster, L.1    Thomson, J.2    Kutranov, S.3
  • 3
    • 34250315289 scopus 로고    scopus 로고
    • Simplified low-copy-number DNA analysis by post-PCR purification
    • P.J. Smith, and J. Ballantyne Simplified low-copy-number DNA analysis by post-PCR purification J. Forensic Sci. 52 2007 820 829
    • (2007) J. Forensic Sci. , vol.52 , pp. 820-829
    • Smith, P.J.1    Ballantyne, J.2
  • 4
    • 84861338305 scopus 로고    scopus 로고
    • An optimized protocol for forensic application of the PreCR Repair Mix to multiplex STR amplification of UV-damaged DNA
    • T.M. Diegoli, M. Farr, C. Cromartie, M.D. Coble, and T.W. Bille An optimized protocol for forensic application of the PreCR Repair Mix to multiplex STR amplification of UV-damaged DNA Forensic Sci. Int. Genet. 6 2012 498 503
    • (2012) Forensic Sci. Int. Genet. , vol.6 , pp. 498-503
    • Diegoli, T.M.1    Farr, M.2    Cromartie, C.3    Coble, M.D.4    Bille, T.W.5
  • 5
    • 0043282586 scopus 로고    scopus 로고
    • The development of reduced size STR amplicons as tools for analysis of degraded DNA
    • J.M. Butler, Y. Shen, and B.R. McCord The development of reduced size STR amplicons as tools for analysis of degraded DNA J. Forensic. Sci. 48 2003 1054 1064
    • (2003) J. Forensic. Sci. , vol.48 , pp. 1054-1064
    • Butler, J.M.1    Shen, Y.2    McCord, B.R.3
  • 6
    • 11844272718 scopus 로고    scopus 로고
    • Characterization of new miniSTR loci to aid analysis of degraded DNA
    • M.D. Coble, and J.M. Butler Characterization of new miniSTR loci to aid analysis of degraded DNA J. Forensic Sci. 50 2005 43 53
    • (2005) J. Forensic Sci. , vol.50 , pp. 43-53
    • Coble, M.D.1    Butler, J.M.2
  • 7
    • 58149502710 scopus 로고    scopus 로고
    • SNP-minisequencing as an excellent tool for analysing degraded DNA recovered from archival tissues
    • K. Babol-Pokora, and J. Berent SNP-minisequencing as an excellent tool for analysing degraded DNA recovered from archival tissues Acta Biochim. Pol. 55 2008 815 819
    • (2008) Acta Biochim. Pol. , vol.55 , pp. 815-819
    • Babol-Pokora, K.1    Berent, J.2
  • 9
    • 33750607566 scopus 로고    scopus 로고
    • Analysis of artificially degraded DNA using STRs and SNPs-results of a collaborative European (EDNAP) exercise
    • L.A. Dixon, A.E. Dobbins, H.K. Pulker, J.M. Butler, P.M. Vallone, and M.D. Coble Analysis of artificially degraded DNA using STRs and SNPs-results of a collaborative European (EDNAP) exercise Forensic Sci. Int. 164 2006 33 44
    • (2006) Forensic Sci. Int. , vol.164 , pp. 33-44
    • Dixon, L.A.1    Dobbins, A.E.2    Pulker, H.K.3    Butler, J.M.4    Vallone, P.M.5    Coble, M.D.6
  • 10
  • 11
    • 84876813780 scopus 로고    scopus 로고
    • Forensic genetic SNP typing of low-template DNA and highly degraded DNA from crime case samples
    • C. Borsting, H.S. Mogensen, and N. Morling Forensic genetic SNP typing of low-template DNA and highly degraded DNA from crime case samples Forensic Sci. Int. Genet. 7 2013 345 352
    • (2013) Forensic Sci. Int. Genet. , vol.7 , pp. 345-352
    • Borsting, C.1    Mogensen, H.S.2    Morling, N.3
  • 13
    • 58349108089 scopus 로고    scopus 로고
    • Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America
    • R. Kosoy, R. Nassir, C. Tian, P.A. White, L.M. Butler, and G. Silva Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America Hum. Mutat. 30 2009 69 78
    • (2009) Hum. Mutat. , vol.30 , pp. 69-78
    • Kosoy, R.1    Nassir, R.2    Tian, C.3    White, P.A.4    Butler, L.M.5    Silva, G.6
  • 15
    • 84888133491 scopus 로고    scopus 로고
    • Single nucleotide polymorphism typing with massively parallel sequencing for human identification
    • S.B. Seo, J.L. King, D.H. Warshauer, C.P. Davis, J. Ge, and B. Budowle Single nucleotide polymorphism typing with massively parallel sequencing for human identification Int. J. Legal Med. 127 2013 1079 1086
    • (2013) Int. J. Legal Med. , vol.127 , pp. 1079-1086
    • Seo, S.B.1    King, J.L.2    Warshauer, D.H.3    Davis, C.P.4    Ge, J.5    Budowle, B.6
  • 16
    • 84903994768 scopus 로고    scopus 로고
    • Evaluation of the Ion Torrent HID SNP 169-plex: a SNP typing assay developed for human identification by second generation sequencing
    • C. Borsting, S.L. Fordyce, J. Olofsson, H.S. Mogensen, and N. Morling Evaluation of the Ion Torrent HID SNP 169-plex: a SNP typing assay developed for human identification by second generation sequencing Forensic Sci. Int. Genet. 12 2014 144 154
    • (2014) Forensic Sci. Int. Genet. , vol.12 , pp. 144-154
    • Borsting, C.1    Fordyce, S.L.2    Olofsson, J.3    Mogensen, H.S.4    Morling, N.5
  • 18
    • 84855838670 scopus 로고    scopus 로고
    • Straightforward inference of ancestry and admixture proportions through ancestry-informative insertion deletion multiplexing
    • R. Pereira, C. Phillips, N. Pinto, C. Santos, S.E. dos Santos, and A. Amorim Straightforward inference of ancestry and admixture proportions through ancestry-informative insertion deletion multiplexing PLoS One 7 2012 e29684
    • (2012) PLoS One , vol.7
    • Pereira, R.1    Phillips, C.2    Pinto, N.3    Santos, C.4    Dos Santos, S.E.5    Amorim, A.6
  • 22
    • 55349100242 scopus 로고    scopus 로고
    • SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access
    • J. Amigo, A. Salas, C. Phillips, and A. Carracedo SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access BMC Bioinf. 9 2008 428
    • (2008) BMC Bioinf. , vol.9 , pp. 428
    • Amigo, J.1    Salas, A.2    Phillips, C.3    Carracedo, A.4
  • 23
    • 36949033151 scopus 로고    scopus 로고
    • STRs vs. SNPs: thoughts on the future of forensic DNA testing
    • J.M. Butler, M.D. Coble, and P.M. Vallone STRs vs. SNPs: thoughts on the future of forensic DNA testing Forensic Sci. Med. Pathol. 3 2007 200 205
    • (2007) Forensic Sci. Med. Pathol. , vol.3 , pp. 200-205
    • Butler, J.M.1    Coble, M.D.2    Vallone, P.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.