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Volumn 5, Issue , 2015, Pages

Diversity and functions of bacterial community in drinking water biofilms revealed by high-throughput sequencing

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; DRINKING WATER; RNA 16S;

EID: 84931265823     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep10044     Document Type: Article
Times cited : (83)

References (68)
  • 1
    • 0036181033 scopus 로고    scopus 로고
    • Contamination potential of biofilms in water distribution systems
    • Flemming, H. C., Percival, S. L. & Walker, J. T. Contamination potential of biofilms in water distribution systems. Water Supply 2, 271-280 (2002
    • (2002) Water Supply , vol.2 , pp. 271-280
    • Flemming, H.C.1    Percival, S.L.2    Walker, J.T.3
  • 2
    • 84901008909 scopus 로고    scopus 로고
    • Pyrosequencing reveals bacterial communities in unchlorinated drinking water distribution system: An integral study of bulk water, suspended soils, loose deposits, and pipe wall biofilm
    • Liu, G. et al. Pyrosequencing reveals bacterial communities in unchlorinated drinking water distribution system: An integral study of bulk water, suspended soils, loose deposits, and pipe wall biofilm. Environ. Sci. Technol. 48, 5467-5476 (2014
    • (2014) Environ. Sci. Technol. , vol.48 , pp. 5467-5476
    • Liu, G.1
  • 3
    • 58549114035 scopus 로고    scopus 로고
    • Quorum sensing in Pseudomonas aeruginosa biofilms
    • De Kievit, T. R. Quorum sensing in Pseudomonas aeruginosa biofilms. Environ. Microbiol. 11, 279-288 (2009
    • (2009) Environ. Microbiol. , vol.11 , pp. 279-288
    • De Kievit, T.R.1
  • 4
    • 81555201514 scopus 로고    scopus 로고
    • Biofilms in drinking water and their role as reservoir for pathogens
    • Wingender, J. & Flemming, H. C. Biofilms in drinking water and their role as reservoir for pathogens. Int. J. Hyg. Envir. Heal. 214, 417-423 (2011
    • (2011) Int. J. Hyg. Envir. Heal. , vol.214 , pp. 417-423
    • Wingender, J.1    Flemming, H.C.2
  • 5
    • 52949134434 scopus 로고    scopus 로고
    • Effect of biofilm on cast iron pipe corrosion in drinking water distribution system: Corrosion scales characterization and microbial community structure investigation
    • Teng, F., Guan, Y. T. & Zhu, W. P. Effect of biofilm on cast iron pipe corrosion in drinking water distribution system: Corrosion scales characterization and microbial community structure investigation. Corros. Sci. 50, 2816-2823 (2008
    • (2008) Corros. Sci. , vol.50 , pp. 2816-2823
    • Teng, F.1    Guan, Y.T.2    Zhu, W.P.3
  • 6
    • 84864405871 scopus 로고    scopus 로고
    • Pyrosequencing analysis of eukaryotic and bacterial communities in faucet biofilms
    • Liu, R. et al. Pyrosequencing analysis of eukaryotic and bacterial communities in faucet biofilms. Sci. Total Environ. 435-436, 124-131 (2012
    • (2012) Sci. Total Environ. , vol.435-436 , pp. 124-131
    • Liu, R.1
  • 7
    • 19344367422 scopus 로고    scopus 로고
    • Role of discontinuous chlorination on microbial production by drinking water biofilms
    • Codony, F., Morató, J. & Mas, J. Role of discontinuous chlorination on microbial production by drinking water biofilms. Water Res. 39, 1896-1906 (2005
    • (2005) Water Res. , vol.39 , pp. 1896-1906
    • Codony, F.1    Morató, J.2    Mas, J.3
  • 8
    • 79952374098 scopus 로고    scopus 로고
    • Effects of diverse water pipe materials on bacterial communities and water quality in the annular reactor
    • Jang, H. J., Choi, Y. J. & Ka, J. O. Effects of diverse water pipe materials on bacterial communities and water quality in the annular reactor. J. Microbiol. Biotechnol. 21, 115-123 (2011
    • (2011) J. Microbiol. Biotechnol. , vol.21 , pp. 115-123
    • Jang, H.J.1    Choi, Y.J.2    Ka, J.O.3
  • 9
    • 0034142586 scopus 로고    scopus 로고
    • In situ probing reveals Aquabacterium commune as a widespread and highly abundant bacterial species in drinking water biofilms
    • Kalmbach, S., Manz, W., Bendinger, B. & Szewzyk, U. In situ probing reveals Aquabacterium commune as a widespread and highly abundant bacterial species in drinking water biofilms. Water Res. 34, 575-581 (2000
    • (2000) Water Res. , vol.34 , pp. 575-581
    • Kalmbach, S.1    Manz, W.2    Bendinger, B.3    Szewzyk, U.4
  • 10
    • 0242405552 scopus 로고    scopus 로고
    • Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system
    • Martiny, A. C., Jøgensen, T. M., Albrechtsen, H., Arvin, E. & Molin, S. Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system. Appl. Environ. Microbiol. 69, 6899-6907 (2003
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6899-6907
    • Martiny, A.C.1    Jøgensen, T.M.2    Albrechtsen, H.3    Arvin, E.4    Molin, S.5
  • 11
    • 2142687116 scopus 로고    scopus 로고
    • Metagenome survey of biofilms in drinking-water networks
    • Schmeisser, C. et al. Metagenome survey of biofilms in drinking-water networks. Appl. Environ. Microbiol. 69, 7298-7309 (2003
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7298-7309
    • Schmeisser, C.1
  • 12
    • 40549118152 scopus 로고    scopus 로고
    • Detection of viable but nonculturable Escherichia coli O157:H7 bacteria in drinking water and river water
    • Liu, Y., Gilchrist, A., Zhang, J. & Li, X. F. Detection of viable but nonculturable Escherichia coli O157:H7 bacteria in drinking water and river water. Appl. Environ. Microbiol. 74, 1502-1507 (2008
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 1502-1507
    • Liu, Y.1    Gilchrist, A.2    Zhang, J.3    Li, X.F.4
  • 13
    • 33645544255 scopus 로고    scopus 로고
    • Drinking water biofilm assessment of total and culturable bacteria under different operating conditions
    • Simões, L. C., Azevedo, N., Pacheco, A., Keevil, C. W. & Vieira, M. J. Drinking water biofilm assessment of total and culturable bacteria under different operating conditions. Biofouling 22, 91-99 (2006
    • (2006) Biofouling , vol.22 , pp. 91-99
    • Simões, L.C.1    Azevedo, N.2    Pacheco, A.3    Keevil, C.W.4    Vieira, M.J.5
  • 14
    • 79952005915 scopus 로고    scopus 로고
    • Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
    • Caporaso, J. G. et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc. Natl. Acad. Sci. U.S.A. 108, 4516-4522 (2010
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 4516-4522
    • Caporaso, J.G.1
  • 15
    • 77955929891 scopus 로고    scopus 로고
    • Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system
    • Hong, P. Y. et al. Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl. Environ. Microbiol. 76, 5631-5635 (2010
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 5631-5635
    • Hong, P.Y.1
  • 17
    • 33645212312 scopus 로고    scopus 로고
    • Identification of active bacterial communities in a model drinking water biofilm system using 16S rRNA-based clone libraries
    • Keinänen-Toivola, M. M., Revetta, R. P. & Santo Domingo, J. W. Identification of active bacterial communities in a model drinking water biofilm system using 16S rRNA-based clone libraries. FEMS Microbiol. Lett. 257, 182-188 (2006
    • (2006) FEMS Microbiol. Lett. , vol.257 , pp. 182-188
    • Keinänen-Toivola, M.M.1    Revetta, R.P.2    Santo Domingo, J.W.3
  • 18
    • 23844497387 scopus 로고    scopus 로고
    • In situ electrooxidation of photobiological hydrogen in photobioelectrochemical fuel cell based on Rhodobacter sphaeroides
    • Rosenbaum, M., Schröder, U. & Scholz, F. In situ electrooxidation of photobiological hydrogen in photobioelectrochemical fuel cell based on Rhodobacter sphaeroides. Environ. Sci. Technol. 39, 6328-6333 (2005
    • (2005) Environ. Sci. Technol. , vol.39 , pp. 6328-6333
    • Rosenbaum, M.1    Schröder, U.2    Scholz, F.3
  • 19
    • 84890923814 scopus 로고    scopus 로고
    • Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment
    • Chao, Y. et al. Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment. Sci. Rep. 3, 3550 (2013
    • (2013) Sci. Rep. , vol.3 , pp. 3550
    • Chao, Y.1
  • 20
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular datasets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. & Tababe, M. KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res. 40, D109-D114 (2012
    • (2012) Nucleic Acids Res. , vol.40 , pp. 109-114
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tababe, M.5
  • 21
    • 84866269058 scopus 로고    scopus 로고
    • Metagenomic analyses of drinking water receiving different disinfection treatments
    • Gomez-Alvarez, V., Revetta, R. P. & Santo Domingo, J. W. Metagenomic analyses of drinking water receiving different disinfection treatments. Appl. Environ. Microbiol. 78, 6095-6012 (2012
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 6095-6012
    • Gomez-Alvarez, V.1    Revetta, R.P.2    Santo Domingo, J.W.3
  • 22
    • 58149291858 scopus 로고    scopus 로고
    • Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas Mexico
    • Breitbart, M. et al. Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico. Environ. Microbiol. 11, 16-34 (2009
    • (2009) Environ. Microbiol. , vol.11 , pp. 16-34
    • Breitbart, M.1
  • 24
    • 0033966442 scopus 로고    scopus 로고
    • Impacts of pipe materials on densities of fixed bacterial biomass in a drinking water distribution system
    • Niquette, P., Servais, P. & Savoir, R. Impacts of pipe materials on densities of fixed bacterial biomass in a drinking water distribution system. Water Res. 34, 1952-1956 (2000
    • (2000) Water Res. , vol.34 , pp. 1952-1956
    • Niquette, P.1    Servais, P.2    Savoir, R.3
  • 26
    • 77950346823 scopus 로고    scopus 로고
    • Microbial diversity in biofilms on water distribution pipes of different materials
    • Yu, J., Kim, D. & Lee, T. Microbial diversity in biofilms on water distribution pipes of different materials. Water Sci. Technol. 61, 163-171 (2010
    • (2010) Water Sci. Technol. , vol.61 , pp. 163-171
    • Yu, J.1    Kim, D.2    Lee, T.3
  • 27
    • 80052718478 scopus 로고    scopus 로고
    • Probing roles of lipopolysaccharide, type 1 fimbria and colanic acid in the attachment of Escherichia coli strains on inert surfaces
    • Chao, Y. & Zhang, T. Probing roles of lipopolysaccharide, type 1 fimbria and colanic acid in the attachment of Escherichia coli strains on inert surfaces. Langmuir 27, 11545-11553 (2011
    • (2011) Langmuir , vol.27 , pp. 11545-11553
    • Chao, Y.1    Zhang, T.2
  • 28
    • 84872323101 scopus 로고    scopus 로고
    • Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets
    • Cai, L., Ye, L., Tong, A. H. Y., Lok, S. & Zhang, T. Biased diversity metrics revealed by bacterial 16S pyrotags derived from different primer sets. PloS ONE 8, e53649 (2013
    • (2013) PloS ONE , vol.8 , pp. e53649
    • Cai, L.1    Ye, L.2    Tong, A.H.Y.3    Lok, S.4    Zhang, T.5
  • 29
    • 78650453707 scopus 로고    scopus 로고
    • Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
    • Claesson, M. J. et al. Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res. 38, e200 (2010
    • (2010) Nucleic Acids Res. , vol.38 , pp. e200
    • Claesson, M.J.1
  • 30
    • 0029926905 scopus 로고    scopus 로고
    • Bacterial glutathione: A sacrificial defense against chlorine compounds
    • Chesney, J. A., Eaton, J. W. & Mahoney, J. R. Bacterial glutathione: A sacrificial defense against chlorine compounds. J. Bacteriol. 178, 2131-2135 (1996
    • (1996) J. Bacteriol. , vol.178 , pp. 2131-2135
    • Chesney, J.A.1    Eaton, J.W.2    Mahoney, J.R.3
  • 31
    • 0032757524 scopus 로고    scopus 로고
    • Escherichia coli resistance to chlorine and glutathione synthesis in response to oxygenation and starvation
    • Saby, S., Leroy, P. & Block, J. Escherichia coli resistance to chlorine and glutathione synthesis in response to oxygenation and starvation. Appl. Environ. Microbiol. 65, 5600-5603 (1999
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5600-5603
    • Saby, S.1    Leroy, P.2    Block, J.3
  • 32
    • 84855308694 scopus 로고    scopus 로고
    • Legionella pneumophila transcriptional response to chlorine treatment
    • Bodet, C., Sahr, T., Dupuy, M., Buchrieser, C. & Héchard, Y. Legionella pneumophila transcriptional response to chlorine treatment. Water Res. 46, 808-816 (2012
    • (2012) Water Res. , vol.46 , pp. 808-816
    • Bodet, C.1    Sahr, T.2    Dupuy, M.3    Buchrieser, C.4    Héchard, Y.5
  • 33
    • 0036126247 scopus 로고    scopus 로고
    • Comparison of bacterial regrowth in distribution systems using free chlorine and chloramine: A statistical study of causative factors
    • Zhang, W. & DiGiano, F. A. Comparison of bacterial regrowth in distribution systems using free chlorine and chloramine: A statistical study of causative factors. Water Res. 36, 1469-1482 (2002
    • (2002) Water Res. , vol.36 , pp. 1469-1482
    • Zhang, W.1    Digiano, F.A.2
  • 34
    • 19344376205 scopus 로고    scopus 로고
    • Disinfectant efficacy of chlorite and chlorine dioxide in drinking water biofilms
    • Gagnon, G. A. et al. Disinfectant efficacy of chlorite and chlorine dioxide in drinking water biofilms. Water Res. 39, 1809-1817 (2005
    • (2005) Water Res. , vol.39 , pp. 1809-1817
    • Gagnon, G.A.1
  • 35
  • 36
    • 18344418957 scopus 로고    scopus 로고
    • Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes
    • research 0025.1-0025.16
    • Copley, S. D. & Dhillon, J. K. Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes. Genome Biol. 3, research 0025.1-0025.16 (2002
    • (2002) Genome Biol. , vol.3
    • Copley, S.D.1    Dhillon, J.K.2
  • 38
    • 36849073187 scopus 로고    scopus 로고
    • The Bacteroides fragilis transcriptome response to oxygen and H2O2: The role of OxyR and its effect on survival and virulence
    • Sund, C. J. et al. The Bacteroides fragilis transcriptome response to oxygen and H2O2: The role of OxyR and its effect on survival and virulence. Mol. Microbiol. 67, 129-142 (2008
    • (2008) Mol. Microbiol. , vol.67 , pp. 129-142
    • Sund, C.J.1
  • 39
    • 0032513362 scopus 로고    scopus 로고
    • Activation of the OxyR transcription factor by reversible disulfide bond formation
    • Zheng, M., Åslund, F. & Storz, G. Activation of the OxyR transcription factor by reversible disulfide bond formation. Science 279, 1718-1721 (1998
    • (1998) Science , vol.279 , pp. 1718-1721
    • Zheng, M.1    Åslund, F.2    Storz, G.3
  • 40
    • 0036714331 scopus 로고    scopus 로고
    • Signal transduction and regulatory mechanisms involved in control of the ?S (RpoS) subunit of RNA polymerase
    • Hengge-Aronis, R. Signal transduction and regulatory mechanisms involved in control of the ?S (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66, 373-395 (2002
    • (2002) Microbiol. Mol. Biol. Rev. , vol.66 , pp. 373-395
    • Hengge-Aronis, R.1
  • 41
    • 84883297077 scopus 로고    scopus 로고
    • A dynamic and complex monochloramine stress response in Escherichia coli revealed by transcriptome analysis
    • Holdera, D., Berryb, D., Daia, D., Raskinb, L. & Xia, C. A dynamic and complex monochloramine stress response in Escherichia coli revealed by transcriptome analysis. Water Res. 47, 4978-4985 (2013
    • (2013) Water Res. , vol.47 , pp. 4978-4985
    • Holdera, D.1    Berryb, D.2    Daia, D.3    Raskinb, L.4    Xia, C.5
  • 42
    • 19744362592 scopus 로고    scopus 로고
    • Role of sialic acid and complex carbohydrate biosynthesis in biofilm formation by nontypeable Haemophilus influenzae in the chinchilla middle ear
    • Jurcisek, J. et al. Role of sialic acid and complex carbohydrate biosynthesis in biofilm formation by nontypeable Haemophilus influenzae in the chinchilla middle ear. Infect. Immun. 73, 3210-3218 (2005
    • (2005) Infect. Immun. , vol.73 , pp. 3210-3218
    • Jurcisek, J.1
  • 45
    • 6044226882 scopus 로고    scopus 로고
    • Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm
    • Sauer, K. et al. Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm. J. Bacteriol. 186, 7312-7326 (2004
    • (2004) J. Bacteriol. , vol.186 , pp. 7312-7326
    • Sauer, K.1
  • 46
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson, G. W. et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43 (2004
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1
  • 47
    • 33749858537 scopus 로고    scopus 로고
    • Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
    • García Martín, H. et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat. Biotechnol. 24, 1263-1269 (2006
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1263-1269
    • García Martín, H.1
  • 48
    • 79251587455 scopus 로고    scopus 로고
    • Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
    • Hess, M. et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463-467 (2011
    • (2011) Science , vol.331 , pp. 463-467
    • Hess, M.1
  • 49
    • 84879678051 scopus 로고    scopus 로고
    • Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
    • Albertsen, M. et al. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat. Biotechnol. 31, 533-538 (2013
    • (2013) Nat. Biotechnol. , vol.31 , pp. 533-538
    • Albertsen, M.1
  • 50
    • 84870020971 scopus 로고    scopus 로고
    • Classification of metagenomic sequences: Methods and challenges
    • Mande, S. S., Mohammed, M. H. & Ghosh, T. S. Classification of metagenomic sequences: Methods and challenges. Brief Bioinform. 13, 669-681 (2012
    • (2012) Brief Bioinform. , vol.13 , pp. 669-681
    • Mande, S.S.1    Mohammed, M.H.2    Ghosh, T.S.3
  • 51
    • 0034999473 scopus 로고    scopus 로고
    • Determination of nutrients limiting biofilm formation and the subsequent impact on disinfectant decay
    • Chandy, J. P. & Angles, M. L. Determination of nutrients limiting biofilm formation and the subsequent impact on disinfectant decay. Water Res. 35, 2677-2682 (2001
    • (2001) Water Res. , vol.35 , pp. 2677-2682
    • Chandy, J.P.1    Angles, M.L.2
  • 52
    • 33846118695 scopus 로고    scopus 로고
    • Dynamics of drinking water biofilm in flow/non-flow conditions
    • Manuel, C. M., Nunes, O. C. & Melo, L. F. Dynamics of drinking water biofilm in flow/non-flow conditions. Water Res. 41, 551-562 (2007
    • (2007) Water Res. , vol.41 , pp. 551-562
    • Manuel, C.M.1    Nunes, O.C.2    Melo, L.F.3
  • 53
    • 42049117524 scopus 로고    scopus 로고
    • Interactions of Cryptosporidium parvum, Giardia lamblia, vaccinal poliovirus type 1, and bacteriophages ?X174 and MS2 with a drinking water biofilm and a wastewater biofilm
    • Helmi, K. et al. Interactions of Cryptosporidium parvum, Giardia lamblia, vaccinal poliovirus type 1, and bacteriophages ?X174 and MS2 with a drinking water biofilm and a wastewater biofilm. Appl. Environ. Microbiol. 74, 2079-2088 (2008
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2079-2088
    • Helmi, K.1
  • 54
    • 78649887273 scopus 로고    scopus 로고
    • Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models
    • Murphy, E. F. et al. Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models. Gut 59, 1635-1642 (2010
    • (2010) Gut , vol.59 , pp. 1635-1642
    • Murphy, E.F.1
  • 55
    • 84861345451 scopus 로고    scopus 로고
    • 454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
    • Zhang, T., Shao, M. F. & Ye, L. 454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. ISME J. 6, 1137-1147 (2012
    • (2012) ISME J. , vol.6 , pp. 1137-1147
    • Zhang, T.1    Shao, M.F.2    Ye, L.3
  • 56
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 57
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Haas, B. J. et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 21, 494-504 (2011
    • (2011) Genome Res. , vol.21 , pp. 494-504
    • Haas, B.J.1
  • 58
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65 (2009
    • (2009) Nature , vol.464 , pp. 59-65
    • Qin, J.1
  • 59
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez, V., Teal, T. K. & Schmidt, T. M. Systematic artifacts in metagenomes from complex microbial communities. ISME J. 3, 1314-1317 (2009
    • (2009) ISME J. , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 60
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267 (2007
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 61
    • 34047240607 scopus 로고    scopus 로고
    • Query-dependent banding (QDB) for faster RNA similarity searches
    • Nawrocki, E .P. & Eddy, S. R. Query-dependent banding (QDB) for faster RNA similarity searches. PLoS Comput. Biol. 3, e56 (2007
    • (2007) PLoS Comput. Biol. , vol.3 , pp. e56
    • Nawrocki . E, P.1    Eddy, S.R.2
  • 62
    • 25644458211 scopus 로고    scopus 로고
    • The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
    • Overbeek, R. et al. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33, 5691-5702 (2005
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5691-5702
    • Overbeek, R.1
  • 63
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server-A public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F. et al. The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9, 386 (2008
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1
  • 64
    • 84863049441 scopus 로고    scopus 로고
    • MetaCluster 4.0: A novel binning algorithm for NGS reads and huge number of species
    • Wang, Y., Leung, H. C. M., Yiu, S. & Chin, F. Y. L. MetaCluster 4.0: A novel binning algorithm for NGS reads and huge number of species. J. Comput. Biol. 19, 241-249 (2012
    • (2012) J. Comput. Biol. , vol.19 , pp. 241-249
    • Wang, Y.1    Leung, H.C.M.2    Yiu, S.3    Chin, F.Y.L.4
  • 65
    • 84865318505 scopus 로고    scopus 로고
    • Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
    • Mason, O. U. et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J. 6, 1715-1727 (2012
    • (2012) ISME J. , vol.6 , pp. 1715-1727
    • Mason, O.U.1
  • 66
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu, W., Lomsadze, A. & Borodovsky, M. Ab initio gene identification in metagenomic sequences. Nucleic Acids Res. 38, e132-e132 (2010
    • (2010) Nucleic Acids Res. , vol.38 , pp. e132-e132
    • Zhu, W.1    Lomsadze, A.2    Borodovsky, M.3
  • 67
    • 83555174830 scopus 로고    scopus 로고
    • Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
    • Mackelprang, R. et al. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480, 368-371 (2011
    • (2011) Nature , vol.480 , pp. 368-371
    • Mackelprang, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.