메뉴 건너뛰기




Volumn 166, Issue 3, 2015, Pages 374-388

Towards an Integrative Morpho-molecular Classification of the Collodaria (Polycystinea, Radiolaria)

Author keywords

Collodaria; Integrative taxonomy; Molecular phylogeny; Polycystine; Radiolaria; Single cell

Indexed keywords

COLLODARIA; COLLOSPHAERIDAE; POLYCYSTINEA; PROTISTA; RADIOLARIA (PROTOZOANS); RHIZARIA; SPHAEROZOIDAE; THALASSICOLLIDAE;

EID: 84931262743     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2015.05.002     Document Type: Article
Times cited : (36)

References (61)
  • 2
    • 0010557952 scopus 로고
    • Fine structure of a collodarian radiolarian (Sphaerozoum punctatum Müller 1858) and cytoplasmic changes during reproduction
    • Anderson O.R. Fine structure of a collodarian radiolarian (Sphaerozoum punctatum Müller 1858) and cytoplasmic changes during reproduction. Mar Micropaleontol 1976, 1:287-297.
    • (1976) Mar Micropaleontol , vol.1 , pp. 287-297
    • Anderson, O.R.1
  • 3
    • 0018090097 scopus 로고
    • Light and electron microscopic observations of feeding behavior, nutrition, and reproduction in laboratory cultures of Thalassicolla nucleata
    • Anderson O.R. Light and electron microscopic observations of feeding behavior, nutrition, and reproduction in laboratory cultures of Thalassicolla nucleata. Tissue Cell 1978, 10:401-412.
    • (1978) Tissue Cell , vol.10 , pp. 401-412
    • Anderson, O.R.1
  • 4
    • 0004020872 scopus 로고
    • Springer-Verlag, New York
    • Anderson O.R. Radiolaria 1983, Springer-Verlag, New York, 363 p.
    • (1983) Radiolaria , pp. 363
    • Anderson, O.R.1
  • 5
    • 33749430710 scopus 로고    scopus 로고
    • Evidence of binary division in mature central capsules of a collosphaerid colonial radiolarian: implications for shell ontogenetic patterns in modern and fossil species
    • Anderson O.R., Gupta S.M. Evidence of binary division in mature central capsules of a collosphaerid colonial radiolarian: implications for shell ontogenetic patterns in modern and fossil species. Paleontol Electron 1998, 1:1-13.
    • (1998) Paleontol Electron , vol.1 , pp. 1-13
    • Anderson, O.R.1    Gupta, S.M.2
  • 6
    • 0142207780 scopus 로고
    • Skeletal morphogenesis in some living collosphaerid radiolaria
    • Anderson O.R., Swanberg N.R. Skeletal morphogenesis in some living collosphaerid radiolaria. Mar Micropaleontol 1981, 6:385-396.
    • (1981) Mar Micropaleontol , vol.6 , pp. 385-396
    • Anderson, O.R.1    Swanberg, N.R.2
  • 7
    • 0032991827 scopus 로고    scopus 로고
    • Fine structure of the colonial radiolarian Collozoum serpentinum (Polycystinea: Spumellaria) with a reconsideration of its taxonomic status and re-establishment of the genus Collophidium (Haeckel)
    • Anderson O.R., Gastrich M.D., Zettler L.A. Fine structure of the colonial radiolarian Collozoum serpentinum (Polycystinea: Spumellaria) with a reconsideration of its taxonomic status and re-establishment of the genus Collophidium (Haeckel). Mar Micropaleontol 1999, 36:81-89.
    • (1999) Mar Micropaleontol , vol.36 , pp. 81-89
    • Anderson, O.R.1    Gastrich, M.D.2    Zettler, L.A.3
  • 9
    • 84866927225 scopus 로고    scopus 로고
    • Molecular phylogeny of tintinnid ciliates (Tintinnida, Ciliophora)
    • Bachy C., Gómez F., López-García P., Dolan J.R., Moreira D. Molecular phylogeny of tintinnid ciliates (Tintinnida, Ciliophora). Protist 2012, 163:873-887.
    • (2012) Protist , vol.163 , pp. 873-887
    • Bachy, C.1    Gómez, F.2    López-García, P.3    Dolan, J.R.4    Moreira, D.5
  • 10
    • 0343815923 scopus 로고
    • Internal skeletal structures of Collosphaera and Trisolenia: a case of repetitive evolution in the Collosphaeridae (Radiolaria)
    • Bjørklund K.R., Goll R.M. Internal skeletal structures of Collosphaera and Trisolenia: a case of repetitive evolution in the Collosphaeridae (Radiolaria). J Paleontol 1979, 53:1293-1326.
    • (1979) J Paleontol , vol.53 , pp. 1293-1326
    • Bjørklund, K.R.1    Goll, R.M.2
  • 12
    • 84898059509 scopus 로고
    • Die koloniebildenden Radiolarien (Spherozoëen) des Golfes von Neapel und der angrenzenden Meeresabschnitte
    • Brandt K. Die koloniebildenden Radiolarien (Spherozoëen) des Golfes von Neapel und der angrenzenden Meeresabschnitte. Monogr Fauna Flora Golf Neapel 1885, 13:1-276.
    • (1885) Monogr Fauna Flora Golf Neapel , vol.13 , pp. 1-276
    • Brandt, K.1
  • 13
    • 0344312542 scopus 로고
    • Beiträge zur Kenntnis der Colliden
    • Brandt K. Beiträge zur Kenntnis der Colliden. Arch Protistenkd 1902, 1:59-88.
    • (1902) Arch Protistenkd , vol.1 , pp. 59-88
    • Brandt, K.1
  • 16
    • 84858702271 scopus 로고    scopus 로고
    • Molecular phylogeny and morphological evolution of the Acantharia (Radiolaria)
    • Decelle J., Suzuki N., Mahé F., de Vargas C., Not F. Molecular phylogeny and morphological evolution of the Acantharia (Radiolaria). Protist 2012, 163:435-450.
    • (2012) Protist , vol.163 , pp. 435-450
    • Decelle, J.1    Suzuki, N.2    Mahé, F.3    de Vargas, C.4    Not, F.5
  • 18
    • 0036678438 scopus 로고    scopus 로고
    • Video plankton recorder reveals high abundance of colonial Radiolaria in surface waters of the central North Pacific
    • Dennett M.R., Caron D.A., Micheals A.F., Gallager S.M., Davis C.S. Video plankton recorder reveals high abundance of colonial Radiolaria in surface waters of the central North Pacific. J Plankton Res 2002, 24:797-805.
    • (2002) J Plankton Res , vol.24 , pp. 797-805
    • Dennett, M.R.1    Caron, D.A.2    Micheals, A.F.3    Gallager, S.M.4    Davis, C.S.5
  • 20
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: maximum likelihood approach. J Mol Evol 1981, 17:368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 21
    • 0000461280 scopus 로고
    • Confidence limits on phylogenetics: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 22
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M., Guindon S., Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 2010, 27:221-224.
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 23
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:694-704.
    • (2003) Syst Biol , vol.52 , pp. 694-704
    • Guindon, S.1    Gascuel, O.2
  • 24
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59:307-321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 26
    • 0003244763 scopus 로고
    • Report on the Radiolaria collected by H.M.S. Challenger during the years 1873-1876. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the Years 1873-1876
    • Haeckel E. Report on the Radiolaria collected by H.M.S. Challenger during the years 1873-1876. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the Years 1873-1876. Zoology 1887, 18:1-1803.
    • (1887) Zoology , vol.18 , pp. 1-1803
    • Haeckel, E.1
  • 28
    • 0344744821 scopus 로고
    • Contribution à l'étude biologique des Sphaerocollides (Radiolaires Collodaires et Radiolaires polycyttaires) et de leur parasites
    • Hollande A., Enjumet M. Contribution à l'étude biologique des Sphaerocollides (Radiolaires Collodaires et Radiolaires polycyttaires) et de leur parasites. Ann Sci Nat Zool 1953, 15:99-183.
    • (1953) Ann Sci Nat Zool , vol.15 , pp. 99-183
    • Hollande, A.1    Enjumet, M.2
  • 29
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 30
    • 80052070878 scopus 로고
    • Zur Entwicklungsgeschichte der Thalassicollen
    • Huth W. Zur Entwicklungsgeschichte der Thalassicollen. Arch Protistenkd 1913, 30:1-124.
    • (1913) Arch Protistenkd , vol.30 , pp. 1-124
    • Huth, W.1
  • 31
    • 0003775022 scopus 로고    scopus 로고
    • Fourth Edition. International Trust for Zoological Nomenclature, London
    • ICZN (International Commission on Zoological Nomenclature) (1999) International Code of Zoological Nomenclature, Fourth Edition. International Trust for Zoological Nomenclature, London, 306 p.
    • (1999) International Code of Zoological Nomenclature , pp. 306
  • 32
    • 84860441384 scopus 로고    scopus 로고
    • Phylogenetic relationships and evolutionary patterns of the order Collodaria (Radiolaria)
    • Ishitani Y., Ujiie Y., de Vargas C., Not F., Takahashi K. Phylogenetic relationships and evolutionary patterns of the order Collodaria (Radiolaria). PLoS ONE 2012, 7:e35775.
    • (2012) PLoS ONE , vol.7 , pp. e35775
    • Ishitani, Y.1    Ujiie, Y.2    de Vargas, C.3    Not, F.4    Takahashi, K.5
  • 33
    • 84871364969 scopus 로고    scopus 로고
    • Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank
    • Jungbluth S.P., Grote J., Lin H.T., Cowen J.P., Rappé M.S. Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank. ISME J 2013, 7:161-172.
    • (2013) ISME J , vol.7 , pp. 161-172
    • Jungbluth, S.P.1    Grote, J.2    Lin, H.T.3    Cowen, J.P.4    Rappé, M.S.5
  • 34
    • 0005638036 scopus 로고
    • Role of the radiolarians in the value of primary productivity in the Red Sea and Gulf of Aden
    • Khmeleva N.N. Role of the radiolarians in the value of primary productivity in the Red Sea and Gulf of Aden. Dokl Akad Nauk SSSR 1967, 172:1430-1433.
    • (1967) Dokl Akad Nauk SSSR , vol.172 , pp. 1430-1433
    • Khmeleva, N.N.1
  • 36
    • 33745647540 scopus 로고    scopus 로고
    • Molecular phylogeny of acantharian and polycystine radiolarians based on ribosomal DNA sequences, and some comparisons with data from the fossil record
    • Kunitomo Y., Sarashina I., Iijima M., Endo K., Sashida K. Molecular phylogeny of acantharian and polycystine radiolarians based on ribosomal DNA sequences, and some comparisons with data from the fossil record. Eur J Protistol 2006, 42:143-153.
    • (2006) Eur J Protistol , vol.42 , pp. 143-153
    • Kunitomo, Y.1    Sarashina, I.2    Iijima, M.3    Endo, K.4    Sashida, K.5
  • 37
    • 84883578561 scopus 로고    scopus 로고
    • ALeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity
    • Kuraku S., Zmasek C.M., Nishimura O., Katoh K. aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. Nucleic Acids Res 2013, 41:W22-W28.
    • (2013) Nucleic Acids Res , vol.41 , pp. W22-W28
    • Kuraku, S.1    Zmasek, C.M.2    Nishimura, O.3    Katoh, K.4
  • 38
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N., Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 2004, 21:1095-1109.
    • (2004) Mol Biol Evol , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 39
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N., Lepage T., Blanquart S. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 2009, 25:2286-2288.
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 40
    • 77958610660 scopus 로고    scopus 로고
    • Pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
    • Matsen F.A., Kodner R.B., Armbrust E.V. pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics 2010, 11:538.
    • (2010) BMC Bioinformatics , vol.11 , pp. 538
    • Matsen, F.A.1    Kodner, R.B.2    Armbrust, E.V.3
  • 41
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L., Elwood H.J., Stickel S., Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 1988, 71:491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 42
    • 0028975824 scopus 로고
    • Planktonic sarcodines (acantharia, radiolaria, foraminifera) in surface waters near Bermuda - abundance, biomass and vertical flux
    • Michaels A.F., Caron D.A., Swanberg N.R., Howse F.A., Michaels C.M. Planktonic sarcodines (acantharia, radiolaria, foraminifera) in surface waters near Bermuda - abundance, biomass and vertical flux. J Plankton Res 1995, 17:131-163.
    • (1995) J Plankton Res , vol.17 , pp. 131-163
    • Michaels, A.F.1    Caron, D.A.2    Swanberg, N.R.3    Howse, F.A.4    Michaels, C.M.5
  • 45
    • 1942476878 scopus 로고    scopus 로고
    • Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria
    • Polet S., Berney C., Fahrni J., Pawlowski J. Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria. Protist 2004, 155:53-63.
    • (2004) Protist , vol.155 , pp. 53-63
    • Polet, S.1    Berney, C.2    Fahrni, J.3    Pawlowski, J.4
  • 46
    • 84931288864 scopus 로고
    • Die Sphaerozoiden. Deutsche Südpolar-Exped 1901-1903
    • Popofsky A. Die Sphaerozoiden. Deutsche Südpolar-Exped 1901-1903. Zoologie II 1920, 16:541-587.
    • (1920) Zoologie II , vol.16 , pp. 541-587
    • Popofsky, A.1
  • 47
    • 84897389728 scopus 로고    scopus 로고
    • Brandtodinium gen. nov. and B. nutricula comb. nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians
    • Probert I., Siano R., Poirier C., Decelle J., Biard T., Tuji A., Suzuki N., Not F. Brandtodinium gen. nov. and B. nutricula comb. nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians. J Phycol 2014, 50:388-399.
    • (2014) J Phycol , vol.50 , pp. 388-399
    • Probert, I.1    Siano, R.2    Poirier, C.3    Decelle, J.4    Biard, T.5    Tuji, A.6    Suzuki, N.7    Not, F.8
  • 48
  • 49
    • 0348226830 scopus 로고    scopus 로고
    • Molecular characterization of nuclear small subunit (18S) -rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta)
    • Santos S.R., Kinzie R.A., Sakai K., Coffroth M.A. Molecular characterization of nuclear small subunit (18S) -rDNA pseudogenes in a symbiotic dinoflagellate (Symbiodinium, Dinophyta). J Eukaryot Microbiol 2003, 50:417-421.
    • (2003) J Eukaryot Microbiol , vol.50 , pp. 417-421
    • Santos, S.R.1    Kinzie, R.A.2    Sakai, K.3    Coffroth, M.A.4
  • 50
    • 78249253024 scopus 로고    scopus 로고
    • Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats
    • Sauvadet A.L., Gobet A., Guillou L. Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats. Environ Microbiol 2010, 12:2946-2964.
    • (2010) Environ Microbiol , vol.12 , pp. 2946-2964
    • Sauvadet, A.L.1    Gobet, A.2    Guillou, L.3
  • 52
    • 80052068467 scopus 로고    scopus 로고
    • Radiolaria: achievements and unresolved issues: taxonomy and cytology
    • Suzuki N., Aita Y. Radiolaria: achievements and unresolved issues: taxonomy and cytology. Plankton Benthos Res 2011, 6:69-91.
    • (2011) Plankton Benthos Res , vol.6 , pp. 69-91
    • Suzuki, N.1    Aita, Y.2
  • 54
    • 0003913485 scopus 로고
    • The Ecology of Colonial Radiolarians: Their Colony Morphology, Trophic Interactions and Associations, Behavior, Distribution, and the Photosynthesis of their Symbionts
    • PhD thesis. Woods Hole Oceanographic Institution and Massachusetts Institute of Technology
    • Swanberg NR (1979) The Ecology of Colonial Radiolarians: Their Colony Morphology, Trophic Interactions and Associations, Behavior, Distribution, and the Photosynthesis of their Symbionts. PhD thesis. Woods Hole Oceanographic Institution and Massachusetts Institute of Technology, 227 p.
    • (1979) , pp. 227
    • Swanberg, N.R.1
  • 55
    • 0026001794 scopus 로고
    • Patterns of sarcodine feeding in epipelagic oceanic plankton
    • Swanberg N.R., Caron D.A. Patterns of sarcodine feeding in epipelagic oceanic plankton. J Plankton Res 1991, 13:287-312.
    • (1991) J Plankton Res , vol.13 , pp. 287-312
    • Swanberg, N.R.1    Caron, D.A.2
  • 56
    • 0019060694 scopus 로고
    • The ecology of Collozoum longiforme, sp. nov., a new colonial radiolarian from the equatorial Atlantic Ocean
    • Swanberg N.R., Harbison G.R. The ecology of Collozoum longiforme, sp. nov., a new colonial radiolarian from the equatorial Atlantic Ocean. Deep-Sea Res 1980, 27:715-731.
    • (1980) Deep-Sea Res , vol.27 , pp. 715-731
    • Swanberg, N.R.1    Harbison, G.R.2
  • 57
    • 37249027666 scopus 로고    scopus 로고
    • Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates
    • Thornhill D.J., Lajeunesse T.C., Santos S.R. Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Mol Ecol 2007, 16:5326-5340.
    • (2007) Mol Ecol , vol.16 , pp. 5326-5340
    • Thornhill, D.J.1    Lajeunesse, T.C.2    Santos, S.R.3
  • 59
    • 79952406380 scopus 로고    scopus 로고
    • SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
    • Vaidya G., Lohman D.J., Meier R. SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 2011, 27:171-180.
    • (2011) Cladistics , vol.27 , pp. 171-180
    • Vaidya, G.1    Lohman, D.J.2    Meier, R.3
  • 60
    • 27544444579 scopus 로고    scopus 로고
    • Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida
    • Yuasa T., Takahashi O., Honda D., Mayama S. Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida. Eur J Protistol 2005, 41:287-298.
    • (2005) Eur J Protistol , vol.41 , pp. 287-298
    • Yuasa, T.1    Takahashi, O.2    Honda, D.3    Mayama, S.4
  • 61
    • 0033034928 scopus 로고    scopus 로고
    • Towards a molecular phylogeny of colonial spumellarians radiolaria
    • Zettler L.A.A., Anderson O.R., Caron D.A. Towards a molecular phylogeny of colonial spumellarians radiolaria. Mar Micropaleontol 1999, 36:67-79.
    • (1999) Mar Micropaleontol , vol.36 , pp. 67-79
    • Zettler, L.A.A.1    Anderson, O.R.2    Caron, D.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.