Pseudomonas pseudoalcaligenes CECT5344, a cyanide-degrading bacterium with by-product (polyhydroxyalkanoates) formation capacity

Microbial Cell Factories

Volumn 14, Issue 1, 2015, Pages

  Cobos, Isabel Manso ^a   Ibáñez García, María Isabel ^a   Moreno, Fernando de la Peña ^b   Sáez Melero, Lara Paloma ^a   Luque Almagro, Víctor Manuel ^a   Rodríguez, Francisco Castillo ^a   Ruiz, María Dolores Roldán ^a   Jiménez, María Auxiliadora Prieto ^b   Vivián, Conrado Moreno ^a  

^a UNIVERSITY OF CÓRDOBA   (Spain)

^b CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

Author keywords

Alkalophile; Bioplastics; Cyanide degradation; Polyhydroxyalkanoates; Pseudomonas

Indexed keywords

3 HYDROXYBUTYRIC ACID; 3 HYDROXYHEXANOATE; 3 HYDROXYOCTANOATE; CYANIDE; HEXANOIC ACID; OCTANOIC ACID; OCTANOIC ACID DERIVATIVE; POLYHYDROXYALKANOIC ACID; UNCLASSIFIED DRUG; BACTERIAL PROTEIN;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM MUTANT; BATCH REACTOR; BIOREMEDIATION; CARBON SOURCE; CHEMICAL COMPOSITION; INDUSTRY; JEWELRY; MASS FRAGMENTOGRAPHY; MICROBIAL DEGRADATION; NONHUMAN; PSEUDOMONAS PSEUDOALCALIGENES; WASTE WATER MANAGEMENT; BIOSYNTHESIS; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PSEUDOMONAS;

BACTERIAL PROTEINS; CYANIDES; GENE EXPRESSION REGULATION, BACTERIAL; POLYHYDROXYALKANOATES; PSEUDOMONAS; PSEUDOMONAS PSEUDOALCALIGENES;

EID: 84931032657     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-015-0267-8     Document Type: Article

References (56)

1. Luque-Almagro VM, Huertas MJ, Martínez-Luque M, Moreno-Vivián C, Roldán MD, García-Gil LJ et al (2005) Bacterial degradation of cyanide and its metal complexes under alkaline conditions. Appl Environ Microbiol 71(2):940-947
2. Quesada A, Guijo MI, Merchán F, Blázquez B, Igeño MI, Blasco R (2007) Essential role of cytochrome bd-related oxidase in cyanide resistance of Pseudomonas pseudoalcaligenes CECT5344. Appl Environ Microbiol 73(16):5118-5124
3. Huertas MJ, Luque-Almagro VM, Martínez-Luque M, Blasco R, Moreno-Vivián C, Castillo F et al (2006) Cyanide metabolism of Pseudomonas pseudoalcaligenes CECT5344: role of siderophores. Biochem Soc Trans 34(1):152-155
4. Estepa J, Luque-Almagro VM, Manso I, Escribano MP, Martínez-Luque M, Castillo F et al (2012) The nit1C gene cluster of Pseudomonas pseudoalcaligenes CECT5344 involved in assimilation of nitriles is essential for growth on cyanide. Environ Microbiol Rep 4(3):326-334
5. Luque-Almagro VM, Acera F, Igeño MI, Wibberg D, Roldán MD, Sáez LP et al (2013) Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environ Microbiol 15(1):253-270
6. Wibberg D, Luque-Almagro VN, Igeño MI, Bremges A, Roldán MD, Merchán F et al (2014) Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. J Biotechnol 175(10):67-68
7. Findlay RH, White DC (1983) Polymeric beta-hydroxyalkanoates from environmental samples and Bacillus megaterium. Appl Environ Microbiol 45(1):71-78
8. García B, Olivera ER, Miñambres B, Fernández-Valverde M, Cañedo LM, Prieto MA et al (1999) Novel biodegradable aromatic plastics from a bacterial source. Genetic and biochemical studies on a route of the phenylacetyl-CoA catabolon. J Biol Chem 274(41):29228-29241
9. Madison LL, Huisman GW (1999) Metabolic engineering of poly(3-hydroxyalkanoates): from DNA to plastic. Microbiol Mol Biol Rev 63(1):21-53
10. Prieto MA, de Eugenio LI, Luengo JM, Witholt B (2007) Synthesis and degradation of polyhydroxyalkanoates. In: Ramos JL, Filloux A (eds) Pseudomonas: A Model System in Biology, vol 5. Springer, New York, pp 397-428
11. Chen GQ (2009) A microbial polyhydroxyalkanoates (PHA) based bio-and materials industry. Chem Soc Rev 38:2434-2446
12. Jendrossek D, Handrick R (2002) Microbial degradation of polyhydroxyalkanoates. Annu Rev Microbiol 56:403-432
13. Galán B, Dinjaski N, Maestro B, de Eugenio LI, Escapa IF, Sanz JM et al (2011) Nucleoid-associated PhaF phasin drives intracellular location and segregation of polyhydroxyalkanoate granules in Pseudomonas putida KT2442. Mol Microbiol 79(2):402-418
14. Jendrossek D (2009) Polyhydroxyalkanoate granules are complex subcellular organelles (carbonosomes). J Bacteriol 191(10):3195-3202
15. Chen GQ (2010) Plastics from bacteria: natural functions and applications, vol 14. Springer, Berlin, Heidelberg
16. Pötter M, Steinbüchel A (2005) Poly(3-hydroxybutyrate) granuleassociated proteins: impacts on poly(3-hydroxybutyrate) synthesis and degradation. Biomacromolecules 6(2):552-560
17. Tortajada M, da Ferreira Silva L, Prieto MA (2013) Second-generation functionalized medium-chain-length polyhydroxyalkanoates. The gateway to high-value bioplastic applications. Inter Microbiol 16(1):1-15
18. Rehm BH, Steinbüchel A (1999) Biochemical and genetic analysis of PHA synthases and other proteins required for PHA synthesis. Int J Biol Macromol 25(1):3-19
19. Rehm BH (2007) Biogenesis of microbial polyhydroxyalkanoate granules: a platform technology for the production of tailor-made bioparticles. Curr Issues Mol Biol 9:41-62
20. Liebergesell M, Rahalkar S, Steinbüchel A (2000) Analysis of the Thiocapsa pfennigii polyhydroxyalkanoate synthase: subcloning, molecular characterization and generation of hybrid synthases with the corresponding Chromatium vinosum enzyme. Appl Microbiol Biotechnol 54:186-194
21. Schubert P, Steinbüchel A, Schlegel HG (1988) Cloning of the Alcaligenes eutrophus genes for synthesis of poly-beta-hydroxybutyric acid (PHB) and synthesis of PHB in Escherichia coli. J Bacteriol 170(12):5837-5847
22. Huisman GW, Wonink E, Meima R, Kazemier B, Terpstra P, Witholt B (1991) Metabolism of poly(3-hydroxyalkanoates) (PHAs) by Pseudomonas oleovorans. Identification and sequences of genes and function of the encoded proteins in the synthesis and degradation of PHA. J Biol Chem 266(4):2191-2198
23. Matsusaki H, Manji S, Taguchi K, Kato M, Fukui T, Doi Y (1998) Cloning and molecular analysis of the poly(3-hydroxybutyrate) and poly(3-hydroxybutyrate-co-3-hydroxyalkanoate) biosynthesis genes in Pseudomonas sp. strain 61-3. J Bacteriol 180(24):6459-6467
24. Ashby RD, Solaiman DKY, Foglia TA (2002) The synthesis of short-and medium-chain-length poly(hydroxyalkanoate) mixtures from glucose-or alkanoic acid-grown Pseudomonas oleovorans. J Ind Microbiol Biotechnol 28(3):147-153
25. Hang X, Lin Z, Chen J, Wang G, Hong K, Chen GQ (2002) Polyhydroxyalkanoate biosynthesis in Pseudomonas pseudoalcaligenes YS1. FEMS Microbiol Lett 212(1):71-75
26. Chen JY, Liu T, Zheng Z, Chen JC, Chen GQ (2004) Polyhydroxyalkanoate synthases PhaC1 and PhaC2 from Pseudomonas stutzeri 1317 had different substrate specificities. FEMS Microbiol Lett 234(2):231-237
27. McCool GJ, Cannon MC (2001) PhaC and PhaR are required for polyhydroxyalkanoic acid synthase activity in Bacillus megaterium. J Bacteriol 183(14):4235-4243
28. Satoh Y, Minamoto N, Tajima K, Munekata M (2002) Polyhydroxyalkanoate synthase from Bacillus sp. INT005 is composed of PhaC and PhaR. J Biosci Bioeng 94(4):343-350
29. de Eugenio LI, García P, Luengo JM, Sanz JM, San Román J, García JL et al (2007) Biochemical evidence that phaZ gene encodes a specific intracellular medium chain length polyhydroxyalkanoate depolymerase in Pseudomonas putida KT2442. J Biol Chem 282(7):4951-4962
30. Huertas MJ, Sáez LP, Roldán MD, Luque-Almagro VM, Martínez-Luque M, Blasco R et al (2010) Alkaline cyanide degradation by Pseudomonas pseudoalcaligenes CECT5344 in a batch reactor. Influence of pH. J Hazard Mater 179(1):72-78
31. Urtuvia V, Villegas P, González M, Seeger M (2014) Bacterial production of the biodegradable plastics polyhydroxyalkanoates. Int J Biol Macromol 70:208-213
32. Tobin KM, ÓConnor KE (2005) Polyhydroxyalkanoate accumulating diversity of Pseudomonas species utilising aromatic hydrocarbons. FEMS Microbiol Lett 253(1):111-118
33. Ward PG, de Roo G, ÓConnor KE (2005) Accumulation of polyhydroxyalkanoate from styrene and phenylacetic acid by Pseudomonas putida CA-3. Appl Environ Microbiol 71(4):2046-2052
34. Nikodinovic J, Kenny ST, Babu RP, Woods T, Blau WJ, ÓConnor KE (2008) The conversion of BTEX compounds by single and defined mixed cultures to medium-chain-length polyhydroxyalkanoate. Appl Microbiol Biotechnol 80:665-673
35. Cerrone F, Sánchez-Peinado MM, Juárez-Jiménez B, González-López J, Pozo C (2010) Biological treatment of two-phase olive mill wastewater (TPOMW, alpeorujo): polyhydroxyalkanoates (PHAs) production by Azotobacter strains. J Microbiol Biotechnol 20(3):594-601
36. Tamboli DP, Kurade MB, Waghmode TR, Joshi SM, Govindwar SP (2010) Exploring the ability of Sphingobacterium sp. ATM to degrade textile dye Direct Blue GLL, mixture of dyes and textile effluent and production of polyhydroxyhexadecanoic acid using waste biomass generated after dye degradation. J Hazard Mater 182:169-176
37. Mohan SV, Reddy MV (2013) Optimization of critical factors to enhance polyhydroxyalkanoates (PHA) synthesis by mixed culture using Taguchi design of experimental methodology. Bioresour Technol 128:409-416
38. Delamarre SC, Chang HJ, Batt CA (2005) Identification and characterization of two polyhydroxyalkanoate biosynthesis loci in Pseudomonas sp. strain 3Y2. Appl Microbiol Biotechnol 69:293-303
39. Steinbüchel A, Füchstenbusch B (1998) Bacterial and other biological systems for polyester production. Trends Biotechnol 16(10):419-427
40. Tribelli PM, Di Martino C, López NI, Raiger-Iustman LJ (2012) Biofilm lifestyle enhances diesel bioremediation and biosurfactant production in the Antarctic polyhydroxyalkanoate producer Pseudomonas extremaustralis. Biodegradation 23(5):645-651
41. Yan S, Subramanian SB, Tyagi RD, Surampalli RY, Zhang TC (2010) Emerging contaminants of environmental concern: source, transport, fate, and treatment. Pract Period Hazard Toxic Radioact Waste Manage 14(1):2-20
42. Tan Y, Neo PC, Najimudin N, Sudesh K, Muhammad TS, Othman AS et al (2010) Cloning and characterization of poly(3-hydroxybutyrate) biosynthesis genes from Pseudomonas sp. USM 4-55. J Basic Microbiol 50(2):179-189
43. Pettinari JM, Chaneton L, Vazquez G, Steinbüchel A, Méndez BS (2003) Insertion sequence-like elements associated with putative polyhydroxybutyrate regulatory genes in Azotobacter sp. FA8. Plasmid 50(1):36-44
44. Segura D, Cruz T, Espín G (2003) Encystment and alkylresorcinol production by Azotobacter vinelandii strains impaired in poly-β-hydroxybutyrate synthesis. Arch Microbiol 179:437-443
45. Ayub ND, Pettinari MJ, Méndez BS, López NI (2007) The polyhydroxyalkanoate genes of a stress resistant Antarctic Pseudomonas are situated within a genomic island. Plasmid 58(3):240-248
46. Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Press, Cold Spring Harbor, NY
47. Morrison GR (1971) Microchemical determination of organic nitrogen with nessler reagent. Anal Biochem 43(2):527-532
48. Asmus E, Garschagen H (1953) The use of barbituric acid for the photometric determination of cyanide and thiocyanate. Z Anal Chem 138:414-422
49. Simon R, Priefer U, Pühler A (1983) A broad host range mobilization system for in vivo genetic engineering transposon mutagenesis in Gram negative bacteria. Biotechnol 1(9):784-791
50. Schäfer A, Tauch A, Jäger W, Kalinowski J, Thierbach G, Pühler A (1994) Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145(1):69-73
51. Becker A, Schmidt M, Jäger W, Pühler A (1995) New gentamicin-resistance and lacZ promoter-probe cassettes suitable for insertion mutagenesis and generation of transcriptional fusions. Gene 162(1):37-39
52. Lageveen RG, Huisman GW, Preusting H, Ketelaar P, Eggink G, Witholt B (1988) Formation of polyesters by Pseudomonas oleovorans: effect of substrates on formation and composition of poly-(R)-3-hydroxyalkanoates and poly-(R)-3-hydroxyalkenoates. Appl Environ Microbiol 54(12):2924-2932
53. Escapa IF, García JL, Bühler B, Blank LM, Prieto MA (2012) The polyhydroxyalkanoate metabolism controls carbon and energy spillage in Pseudomonas putida. Environ Microbiol 14(4):1049-1063
54. Saitou N, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406-425
55. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
56. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA 5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739