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Volumn 7, Issue 5, 2015, Pages 2534-2541

A taxonomic review of Clostridium difficile phages and proposal of a novel genus, "Phimmp04likevirus"

Author keywords

Bacteriophage; Bacteriophage phylogeny; Clostridium difficile; Myoviridae; Protein clustering; Siphoviridae; Small myovirus; Taxonomy

Indexed keywords

ABC TRANSPORTER; VIRAL PROTEIN;

EID: 84930958634     PISSN: None     EISSN: 19994915     Source Type: Journal    
DOI: 10.3390/v7052534     Document Type: Article
Times cited : (21)

References (25)
  • 1
    • 33645226631 scopus 로고    scopus 로고
    • Genomic organization and molecular characterization of Clostridium difficile bacteriophage phi cd119
    • Govind, R.; Fralick, J.; Rolfe, R. Genomic organization and molecular characterization of Clostridium difficile bacteriophage phi cd119. J. Bacteriol. 2006, 188, 2568-2577.
    • (2006) J. Bacteriol , vol.188 , pp. 2568-2577
    • Govind, R.1    Fralick, J.2    Rolfe, R.3
  • 2
    • 33947403984 scopus 로고    scopus 로고
    • The complete genome sequence of Clostridium difficile phage phiC2 and comparisons to phiCD119 and inducible prophages of CD630
    • Goh, S.; Ong, P.; Song, K.; Riley, T.; Chang, B. The complete genome sequence of Clostridium difficile phage phiC2 and comparisons to phiCD119 and inducible prophages of CD630. Microbiology 2007, 153, 676-685.
    • (2007) Microbiology , vol.153 , pp. 676-685
    • Goh, S.1    Ong, P.2    Song, K.3    Riley, T.4    Chang, B.5
  • 3
    • 53849135601 scopus 로고    scopus 로고
    • Gasson, M. Molecular characterization of a Clostridium difficile bacteriophage and its cloned biologically active endolysin
    • Mayer, M.; Narbad, A.; Gasson, M. Molecular characterization of a Clostridium difficile bacteriophage and its cloned biologically active endolysin. J. Bacteriol. 2008, 190, 6734-6740.
    • (2008) J. Bacteriol , vol.190 , pp. 6734-6740
    • Mayer, M.1    Narbad, A.2
  • 4
    • 77954213225 scopus 로고    scopus 로고
    • Genome analysis of the Clostridium difficile phage phiCD6356, a temperate phage of the siphoviridae family
    • Horgan, M.; O'Sullivan, O.; Coffey, A.; Fitzgerald, G.; van Sinderen, D.; McAuliffe, O.; Ross, R. Genome analysis of the Clostridium difficile phage phiCD6356, a temperate phage of the siphoviridae family. Gene 2010, 462, 34-43.
    • (2010) Gene , vol.462 , pp. 34-43
    • Horgan, M.1    O'sullivan, O.2    Coffey, A.3    Fitzgerald, G.4    Van Sinderen, D.5    McAuliffe, O.6    Ross, R.7
  • 5
    • 79958160416 scopus 로고    scopus 로고
    • Prophage-stimulated toxin production in Clostridium difficile NAP1/027 lysogens
    • Sekulovic, O.; Meessen-Pinard, M.; Fortier, L. Prophage-stimulated toxin production in Clostridium difficile NAP1/027 lysogens. J. Bacteriol. 2011, 193, 2726-2734.
    • (2011) J. Bacteriol , vol.193 , pp. 2726-2734
    • Sekulovic, O.1    Meessen-Pinard, M.2    Fortier, L.3
  • 6
    • 84868623569 scopus 로고    scopus 로고
    • Evidence of in vivo prophage induction during Clostridium difficile infection. Appl. Environ
    • Meessen-Pinard, M.; Sekulovic, O.; Fortier, L. Evidence of in vivo prophage induction during Clostridium difficile infection. Appl. Environ. Microbiol. 2012, 78, 7662-7670.
    • (2012) Microbiol , vol.78 , pp. 7662-7670
    • Meessen-Pinard, M.1    Sekulovic, O.2    Fortier, L.3
  • 7
    • 84899692742 scopus 로고    scopus 로고
    • What does the talking? Quorum sensing signalling genes discovered in a bacteriophage genome
    • Hargreaves, K.R.; Kropinski, A.M.; Clokie, M.R.J. What does the talking? Quorum sensing signalling genes discovered in a bacteriophage genome. PLoS ONE 2014, 9, e85131.
    • (2014) Plos ONE , vol.9
    • Hargreaves, K.R.1    Kropinski, A.M.2    Clokie, M.3
  • 8
    • 84908432854 scopus 로고    scopus 로고
    • Abundant and diverse clustered regularly interspaced short palindromic repeat spacers in Clostridium difficile strains and prophages target multiple phage types within this pathogen
    • Hargreaves, K.R.; Flores, C.O.; Lawley, T.D.; Clokie, M.R.J. Abundant and diverse clustered regularly interspaced short palindromic repeat spacers in Clostridium difficile strains and prophages target multiple phage types within this pathogen. MBio 2014, 5, e01045-e01113.
    • (2014) Mbio , vol.5
    • Hargreaves, K.R.1    Flores, C.O.2    Lawley, T.D.3    Clokie, M.4
  • 9
    • 84899684470 scopus 로고    scopus 로고
    • Clostridium difficile phages: Still difficult? Front
    • Hargreaves, K.R.; Clokie, M.R.J. Clostridium difficile phages: Still difficult? Front. Microbiol. 2014, 5, e184.
    • (2014) Microbiol , vol.5
    • Hargreaves, K.R.1    Clokie, M.2
  • 11
    • 15544369054 scopus 로고    scopus 로고
    • Effect of phage infection on toxin production by Clostridium difficile
    • Goh, S.; Chang, B.; Riley, T. Effect of phage infection on toxin production by Clostridium difficile. J. Med. Microbiol. 2005, 54, 129-135.
    • (2005) J. Med. Microbiol , vol.54 , pp. 129-135
    • Goh, S.1    Chang, B.2    Riley, T.3
  • 12
    • 78650574888 scopus 로고    scopus 로고
    • Bacteriophage treatment significantly reduces viable Clostridium difficile and prevents toxin production in an in vitro model system
    • Meader, E.; Mayer, M.; Gasson, M.; Steverding, D.; Carding, S.; Narbad, A. Bacteriophage treatment significantly reduces viable Clostridium difficile and prevents toxin production in an in vitro model system. Anaerobe 2010, 16, 549-554.
    • (2010) Anaerobe , vol.16 , pp. 549-554
    • Meader, E.1    Mayer, M.2    Gasson, M.3    Steverding, D.4    Carding, S.5    Narbad, A.6
  • 13
    • 84891648569 scopus 로고    scopus 로고
    • Phage C2 mediates transduction of tn6215, encoding erythromycin resistance, between Clostridium difficile strains
    • Goh, S.; Hussain, H.; Chang, B.J.; Emmett, W.; Riley, T.V.; Mullany, P. Phage C2 mediates transduction of tn6215, encoding erythromycin resistance, between Clostridium difficile strains. MBio 2013, 4, e00840-13.
    • (2013) Mbio , vol.4
    • Goh, S.1    Hussain, H.2    Chang, B.J.3    Emmett, W.4    Riley, T.V.5    Mullany, P.6
  • 14
    • 80053609598 scopus 로고    scopus 로고
    • Structure-based modification of a Clostridium difficile-targeting endolysin affects activity and host range
    • Mayer, M.; Garefalaki, V.; Spoerl, R.; Narbad, A.; Meijers, R. Structure-based modification of a Clostridium difficile-targeting endolysin affects activity and host range. J. Bacteriol. 2011, 193, 5477-5486.
    • (2011) J. Bacteriol , vol.193 , pp. 5477-5486
    • Mayer, M.1    Garefalaki, V.2    Spoerl, R.3    Narbad, A.4    Meijers, R.5
  • 15
    • 0022376704 scopus 로고
    • Dating the human-ape split by a molecular clock of mitochondrial DNA
    • Hasegawa, M.; Kishino, H.; Yano, T. Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 1985, 22, 160-174.
    • (1985) J. Mol. Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 16
    • 84896992962 scopus 로고    scopus 로고
    • Fortier, L.-C. Characterization of temperate phages infecting Clostridium difficile isolates from human and animal origin
    • Sekulovic, O.; Garneau, J.R.; Néron, A.; Fortier, L.-C. Characterization of temperate phages infecting Clostridium difficile isolates from human and animal origin. Appl. Environ. Microbiol 2014, 80, 2555-2563.
    • (2014) Appl. Environ. Microbiol , vol.80 , pp. 2555-2563
    • Sekulovic, O.1    Garneau, J.R.2    Néron, A.3
  • 17
    • 0035856287 scopus 로고    scopus 로고
    • The bacterial para-parb partitioning proteins
    • Bignell, C.; Thomas, C.M. The bacterial para-parb partitioning proteins. J. Biotechnol. 2001, 91, 1-34.
    • (2001) J. Biotechnol , vol.91 , pp. 1-34
    • Bignell, C.1    Thomas, C.M.2
  • 19
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W.; Godzik, A. Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22, 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 20
    • 84870431038 scopus 로고    scopus 로고
    • Cd-hit: Accelerated for clustering the next-generation sequencing data
    • Fu, L.; Niu, B.; Zhu, Z.; Wu, S.; Li, W. Cd-hit: Accelerated for clustering the next-generation sequencing data. Bioinformatics 2012, 28, 3150-3152.
    • (2012) Bioinformatics , vol.28 , pp. 3150-3152
    • Fu, L.1    Niu, B.2    Zhu, Z.3    Wu, S.4    Li, W.5
  • 22
    • 85017805877 scopus 로고    scopus 로고
    • http://tree.bio.ed.ac.uk/software/figtree/(accessed on 17 May 2015)
  • 24
    • 85017805060 scopus 로고    scopus 로고
    • https://inkscape.org/en/download/(accessed on 17 May 2015)
  • 25
    • 84890330527 scopus 로고    scopus 로고
    • Mega6: Molecular evolutionary genetics analysis version 6.0
    • Tamura, K.; Stecher, G.; Peterson, D.; Filipski, A.; Kumar, S. Mega6: Molecular evolutionary genetics analysis version 6.0. J. Mol. Evol. 2013, 30, 2725-2729.
    • (2013) J. Mol. Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.