-
1
-
-
55049108997
-
Urine in clinical proteomics
-
Decramer, S., de Peredo, A. G., Breuil, B., Mischak, H. et al., Urine in clinical proteomics. Mol. Cell. Proteomics 2008, 7, 1850-1862.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1850-1862
-
-
Decramer, S.1
de Peredo, A.G.2
Breuil, B.3
Mischak, H.4
-
2
-
-
35649000519
-
Practical points in urinary proteomics
-
Thongboonkerd, V., Practical points in urinary proteomics. J. Proteome Res. 2007, 6, 3881-3890.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 3881-3890
-
-
Thongboonkerd, V.1
-
3
-
-
84856400021
-
Searching for new biomarkers of renal diseases through proteomics
-
Konvalinka, A., Scholey, J. W., Diamandis, E. P., Searching for new biomarkers of renal diseases through proteomics. Clin. Chem. 2012, 58, 353-365.
-
(2012)
Clin. Chem.
, vol.58
, pp. 353-365
-
-
Konvalinka, A.1
Scholey, J.W.2
Diamandis, E.P.3
-
4
-
-
44449084353
-
Urine cytology and urine-based markers for bladder urothelial carcinoma detection and monitoring: developments and future prospects
-
Shariat, S. F., Karam, J. A., Raman, J. D., Urine cytology and urine-based markers for bladder urothelial carcinoma detection and monitoring: developments and future prospects. Biomarkers Med. 2008, 2, 165-180.
-
(2008)
Biomarkers Med.
, vol.2
, pp. 165-180
-
-
Shariat, S.F.1
Karam, J.A.2
Raman, J.D.3
-
5
-
-
70350746686
-
Urine proteomics for profiling of human disease using high accuracy mass spectrometry
-
Kentsis, A., Monigatti, F., Dorff, K., Campagne, F. et al., Urine proteomics for profiling of human disease using high accuracy mass spectrometry. Proteomics Clin. Appl. 2009, 3, 1052-1061.
-
(2009)
Proteomics Clin. Appl.
, vol.3
, pp. 1052-1061
-
-
Kentsis, A.1
Monigatti, F.2
Dorff, K.3
Campagne, F.4
-
6
-
-
50849092540
-
CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
-
Coon, J. J., Zurbig, P., Dakna, M., Dominiczak, A. F. et al., CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics. Proteomics Clin. Appl. 2008, 2, 964-973.
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 964-973
-
-
Coon, J.J.1
Zurbig, P.2
Dakna, M.3
Dominiczak, A.F.4
-
7
-
-
84904970447
-
Multicentre prospective validation of a urinary peptidome-based classifier for the diagnosis of type 2 diabetic nephropathy
-
Siwy, J., Schanstra, J. P., Argiles, A., Bakker, S. J. et al., Multicentre prospective validation of a urinary peptidome-based classifier for the diagnosis of type 2 diabetic nephropathy. Nephrol. Dial. Transplant 2014, 29, 1563-1570.
-
(2014)
Nephrol. Dial. Transplant
, vol.29
, pp. 1563-1570
-
-
Siwy, J.1
Schanstra, J.P.2
Argiles, A.3
Bakker, S.J.4
-
8
-
-
79952300137
-
Toward a standardized urine proteome analysis methodology
-
Court, M., Selevsek, N., Matondo, M., Allory, Y. et al., Toward a standardized urine proteome analysis methodology. Proteomics 2011, 11, 1160-1171.
-
(2011)
Proteomics
, vol.11
, pp. 1160-1171
-
-
Court, M.1
Selevsek, N.2
Matondo, M.3
Allory, Y.4
-
9
-
-
77958002294
-
Optimizing a proteomics platform for urine biomarker discovery
-
Afkarian, M., Bhasin, M., Dillon, S. T., Guerrero, M. C. et al., Optimizing a proteomics platform for urine biomarker discovery. Mol. Cell. Proteomics 2010, 9, 2195-2204.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2195-2204
-
-
Afkarian, M.1
Bhasin, M.2
Dillon, S.T.3
Guerrero, M.C.4
-
10
-
-
78149291420
-
Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease
-
Good, D. M., Zurbig, P., Argiles, A., Bauer, H. W. et al., Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease. Mol. Cell. Proteomics 2010, 9, 2424-2437.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2424-2437
-
-
Good, D.M.1
Zurbig, P.2
Argiles, A.3
Bauer, H.W.4
-
11
-
-
72149116700
-
Optimization of analytical and pre-analytical conditions for MALDI-TOF-MS human urine protein profiles
-
Calvano, C. D., Aresta, A., Iacovone, M., De Benedetto, G. E. et al., Optimization of analytical and pre-analytical conditions for MALDI-TOF-MS human urine protein profiles. J. Pharm. Biomed. Anal. 2010, 51, 907-914.
-
(2010)
J. Pharm. Biomed. Anal.
, vol.51
, pp. 907-914
-
-
Calvano, C.D.1
Aresta, A.2
Iacovone, M.3
De Benedetto, G.E.4
-
12
-
-
67049146271
-
Are protease inhibitors required for gel-based proteomics of kidney and urine?
-
Havanapan, P.-O., Thongboonkerd, V., Are protease inhibitors required for gel-based proteomics of kidney and urine? J. Proteome Res. 2009, 8, 3109-3117.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 3109-3117
-
-
Havanapan, P.-O.1
Thongboonkerd, V.2
-
13
-
-
77951759264
-
Banking of clinical samples for proteomic biomarker studies: a consideration of logistical issues with a focus on pre-analytical variation
-
Jackson, D. H., Banks, R. E., Banking of clinical samples for proteomic biomarker studies: a consideration of logistical issues with a focus on pre-analytical variation. Proteomics Clin. Appl. 2010, 4, 250-270.
-
(2010)
Proteomics Clin. Appl.
, vol.4
, pp. 250-270
-
-
Jackson, D.H.1
Banks, R.E.2
-
14
-
-
79961224436
-
Biospecimen reporting for improved study quality (BRISQ)
-
Moore, H. M., Kelly, A. B., Jewell, S. D., McShane, L. M. et al., Biospecimen reporting for improved study quality (BRISQ). J. Proteome Res. 2011, 10, 3429-3438.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3429-3438
-
-
Moore, H.M.1
Kelly, A.B.2
Jewell, S.D.3
McShane, L.M.4
-
15
-
-
77950818385
-
Urine collection and processing for protein biomarker discovery and quantification
-
Thomas, C. E., Sexton, W., Benson, K., Sutphen, R., Koomen, J., Urine collection and processing for protein biomarker discovery and quantification. Cancer Epidemiol. Biomarkers Prev. 2010, 19, 953-959.
-
(2010)
Cancer Epidemiol. Biomarkers Prev.
, vol.19
, pp. 953-959
-
-
Thomas, C.E.1
Sexton, W.2
Benson, K.3
Sutphen, R.4
Koomen, J.5
-
16
-
-
55249088324
-
Optimizing sample handling for urinary proteomics
-
Lee, R. S., Monigatti, F., Briscoe, A. C., Waldon, Z. et al., Optimizing sample handling for urinary proteomics. J. Proteome Res. 2008, 7, 4022-4030.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4022-4030
-
-
Lee, R.S.1
Monigatti, F.2
Briscoe, A.C.3
Waldon, Z.4
-
17
-
-
73949150052
-
Creatinine as the gold standard for kidney injury biomarker studies?
-
Waikar, S. S., Betensky, R. A., Bonventre, J. V., Creatinine as the gold standard for kidney injury biomarker studies? Nephrol. Dial. Transpl. 2009, 24, 3263-3265.
-
(2009)
Nephrol. Dial. Transpl.
, vol.24
, pp. 3263-3265
-
-
Waikar, S.S.1
Betensky, R.A.2
Bonventre, J.V.3
-
18
-
-
53549112757
-
Sample handling for mass spectrometric proteomic investigations of human urine
-
Petri, A. L., Hogdall, C., Christensen, I. J., Simonsen, A. H. et al., Sample handling for mass spectrometric proteomic investigations of human urine. Proteomics Clin. Appl. 2008, 2, 1184-1193.
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 1184-1193
-
-
Petri, A.L.1
Hogdall, C.2
Christensen, I.J.3
Simonsen, A.H.4
-
19
-
-
34548185943
-
Urine profiling by SELDI-TOF/MS: monitoring of the critical steps in sample collection, handling and analysis
-
Papale, M., Pedicillo, M. C., Thatcher, B. J., Di Paolo, S. et al., Urine profiling by SELDI-TOF/MS: monitoring of the critical steps in sample collection, handling and analysis. J. Chromatog. B 2007, 856, 205-213.
-
(2007)
J. Chromatog. B
, vol.856
, pp. 205-213
-
-
Papale, M.1
Pedicillo, M.C.2
Thatcher, B.J.3
Di Paolo, S.4
-
20
-
-
24144432109
-
Influences of blood sample processing on low-molecular-weight proteome identified by surface-enhanced laser desorption/ionization mass spectrometry
-
Banks, R. E., Stanley, A. J., Cairns, D. A., Barrett, J. H. et al., Influences of blood sample processing on low-molecular-weight proteome identified by surface-enhanced laser desorption/ionization mass spectrometry. Clin. Chem. 2005, 51, 1637-1649.
-
(2005)
Clin. Chem.
, vol.51
, pp. 1637-1649
-
-
Banks, R.E.1
Stanley, A.J.2
Cairns, D.A.3
Barrett, J.H.4
-
21
-
-
80053655331
-
A pilot study to investigate the potential of mass spectrometry profiling in the discovery of novel serum markers in chronic renal disease
-
Thompson, D., Develter, W., Cairns, D. A., Barrett, J. H. et al., A pilot study to investigate the potential of mass spectrometry profiling in the discovery of novel serum markers in chronic renal disease. Proteomics Clin. Appl. 2011, 5, 523-531.
-
(2011)
Proteomics Clin. Appl.
, vol.5
, pp. 523-531
-
-
Thompson, D.1
Develter, W.2
Cairns, D.A.3
Barrett, J.H.4
-
22
-
-
79956260679
-
A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses
-
Welberry Smith, M. P., Wood, S. L., Zougman, A., Ho, J. T. et al., A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses. Proteomics 2011, 11, 2222-2235.
-
(2011)
Proteomics
, vol.11
, pp. 2222-2235
-
-
Welberry Smith, M.P.1
Wood, S.L.2
Zougman, A.3
Ho, J.T.4
-
23
-
-
84897149362
-
-
Bates, D., Maechler, M., Bolker, B., Walker, S., Ime4: linear mixed-effects models using Eigen and S4.R package version 1.1-5.
-
Ime4: linear mixed-effects models using Eigen and S4.R package version 1.1-5.
-
-
Bates, D.1
Maechler, M.2
Bolker, B.3
Walker, S.4
-
24
-
-
79955436583
-
Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome
-
Nagaraj, N., Mann, M., Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome. J. Proteome Res. 2011, 10, 637-645.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 637-645
-
-
Nagaraj, N.1
Mann, M.2
-
25
-
-
33646161950
-
Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery
-
Zhou, H., Yuen, P. S. T., Pisitkun, T., Gonzales, P. A. et al., Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery. Kidney Int. 2006, 69, 1471-1476.
-
(2006)
Kidney Int.
, vol.69
, pp. 1471-1476
-
-
Zhou, H.1
Yuen, P.S.T.2
Pisitkun, T.3
Gonzales, P.A.4
-
26
-
-
84896988610
-
Urine stability studies for novel biomarkers of acute kidney injury
-
Parikh, C. R., Butrymowicz, I., Yu, A., Chinchilli, V. M. et al., Urine stability studies for novel biomarkers of acute kidney injury. Am. J. Kidney Dis. 2014, 63, 567-572.
-
(2014)
Am. J. Kidney Dis.
, vol.63
, pp. 567-572
-
-
Parikh, C.R.1
Butrymowicz, I.2
Yu, A.3
Chinchilli, V.M.4
-
27
-
-
0003055646
-
Freezing method affects the concentration and variability of urine proteins and the interpretation of data on microalbuminuria
-
Schultz, C. J., Dalton, R. N., Turnert, C., Neil, H. A. W., Dunger, D. B., Freezing method affects the concentration and variability of urine proteins and the interpretation of data on microalbuminuria. Diabet. Med. 2000, 17, 7-14.
-
(2000)
Diabet. Med.
, vol.17
, pp. 7-14
-
-
Schultz, C.J.1
Dalton, R.N.2
Turnert, C.3
Neil, H.A.W.4
Dunger, D.B.5
-
28
-
-
77749292311
-
Urinary proteases degrade albumin: implications for measurement of albuminuria in stored samples
-
Kania, K., Byrnes, E. A., Beilby, J. P., Webb, S. A., Strong, K. J., Urinary proteases degrade albumin: implications for measurement of albuminuria in stored samples. Ann. Clin. Biochem. 2010, 47, 151-157.
-
(2010)
Ann. Clin. Biochem.
, vol.47
, pp. 151-157
-
-
Kania, K.1
Byrnes, E.A.2
Beilby, J.P.3
Webb, S.A.4
Strong, K.J.5
-
29
-
-
84907271963
-
Urinary proteomics and molecular determinants of chronic kidney disease: possible link to proteases
-
Filip, S., Pontillo, C., Peter Schanstra, J., Vlahou, A. et al., Urinary proteomics and molecular determinants of chronic kidney disease: possible link to proteases. Expert Rev. Proteomics 2014, 1-14.
-
(2014)
Expert Rev. Proteomics
, pp. 1-14
-
-
Filip, S.1
Pontillo, C.2
Peter Schanstra, J.3
Vlahou, A.4
-
30
-
-
25644460465
-
Artifactual isoform profile modification following treatment of human plasma or serum with protease inhibitor, monitored by 2-dimensional electrophoresis and mass spectrometry
-
Schuchard, M. D., Mehigh, R. J., Cockrill, S. L., Lipscomb, G. T. et al., Artifactual isoform profile modification following treatment of human plasma or serum with protease inhibitor, monitored by 2-dimensional electrophoresis and mass spectrometry. BioTechniques 2005, 39, 239-247.
-
(2005)
BioTechniques
, vol.39
, pp. 239-247
-
-
Schuchard, M.D.1
Mehigh, R.J.2
Cockrill, S.L.3
Lipscomb, G.T.4
-
31
-
-
84878643645
-
Technical aspects and inter-laboratory variability in native peptide profiling: the CE-MS experience
-
Mischak, H., Vlahou, A., Ioannidis, J. P., Technical aspects and inter-laboratory variability in native peptide profiling: the CE-MS experience. Clin. Biochem. 2013, 46, 432-443.
-
(2013)
Clin. Biochem.
, vol.46
, pp. 432-443
-
-
Mischak, H.1
Vlahou, A.2
Ioannidis, J.P.3
-
32
-
-
33344479181
-
Discovery and validation of new protein biomarkers for urothelial cancer: a prospective analysis
-
Theodorescu, D., Wittke, S., Ross, M. M., Walden, M. et al., Discovery and validation of new protein biomarkers for urothelial cancer: a prospective analysis. Lancet Oncol. 2006, 7, 230-240.
-
(2006)
Lancet Oncol.
, vol.7
, pp. 230-240
-
-
Theodorescu, D.1
Wittke, S.2
Ross, M.M.3
Walden, M.4
-
33
-
-
33947396353
-
Standardized peptidome profiling of human urine by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
-
Fiedler, G. M., Baumann, S., Leichtle, A., Oltmann, A. et al., Standardized peptidome profiling of human urine by magnetic bead separation and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Clin. Chem. 2007, 53, 421-428.
-
(2007)
Clin. Chem.
, vol.53
, pp. 421-428
-
-
Fiedler, G.M.1
Baumann, S.2
Leichtle, A.3
Oltmann, A.4
-
34
-
-
0346101481
-
Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry
-
Schaub, S., Wilkins, J., Weiler, T., Sangster, K. et al., Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry. Kidney Int. 2004, 65, 323-332.
-
(2004)
Kidney Int.
, vol.65
, pp. 323-332
-
-
Schaub, S.1
Wilkins, J.2
Weiler, T.3
Sangster, K.4
-
35
-
-
0023144027
-
The effect of storage pH on the precipitation of proteins in deep frozen urine samples
-
Townsend, J. C., Sadler, W. A., Shanks, G. M., The effect of storage pH on the precipitation of proteins in deep frozen urine samples. Ann. Clin. Biochem. 1987, 24, 111-112.
-
(1987)
Ann. Clin. Biochem.
, vol.24
, pp. 111-112
-
-
Townsend, J.C.1
Sadler, W.A.2
Shanks, G.M.3
-
36
-
-
80052443945
-
Urinary MMP-9/NGAL complex in children with acute cystitis
-
Hatipoglu, S., Sevketoglu, E., Gedikbasi, A., Yilmaz, A. et al., Urinary MMP-9/NGAL complex in children with acute cystitis. Pediatr. Nephrol. 2011, 26, 1263-1268.
-
(2011)
Pediatr. Nephrol.
, vol.26
, pp. 1263-1268
-
-
Hatipoglu, S.1
Sevketoglu, E.2
Gedikbasi, A.3
Yilmaz, A.4
-
37
-
-
78349246789
-
Chronic humoral rejection of human kidney allografts is associated with MMP-2 accumulation in podocytes and its release in the urine
-
Wong, W., DeVito, J., Nguyen, H., Sarracino, D. et al., Chronic humoral rejection of human kidney allografts is associated with MMP-2 accumulation in podocytes and its release in the urine. Am. J. Transplant. 2010, 10, 2463-2471.
-
(2010)
Am. J. Transplant.
, vol.10
, pp. 2463-2471
-
-
Wong, W.1
DeVito, J.2
Nguyen, H.3
Sarracino, D.4
-
38
-
-
79957594440
-
Diagnosis of subclinical and clinical acute T-cell-mediated rejection in renal transplant patients by urinary proteome analysis
-
Metzger, J., Chatzikyrkou, C., Broecker, V., Schiffer, E. et al., Diagnosis of subclinical and clinical acute T-cell-mediated rejection in renal transplant patients by urinary proteome analysis. Proteomics Clin. Appl. 2011, 5, 322-333.
-
(2011)
Proteomics Clin. Appl.
, vol.5
, pp. 322-333
-
-
Metzger, J.1
Chatzikyrkou, C.2
Broecker, V.3
Schiffer, E.4
-
39
-
-
84870696333
-
Protease profiling of different biofluids in type 1 diabetes mellitus
-
Caseiro, A., Ferreira, R., Quintaneiro, C., Pereira, A. et al., Protease profiling of different biofluids in type 1 diabetes mellitus. Clin. Biochem. 2012, 45, 1613-1619.
-
(2012)
Clin. Biochem.
, vol.45
, pp. 1613-1619
-
-
Caseiro, A.1
Ferreira, R.2
Quintaneiro, C.3
Pereira, A.4
-
40
-
-
84891836372
-
Correlation of serum and urinary matrix metalloproteases/tissue inhibitors of metalloproteases with subclinical allograft fibrosis in renal transplantation
-
Hirt-Minkowski, P., Marti, H. P., Honger, G., Grandgirard, D. et al., Correlation of serum and urinary matrix metalloproteases/tissue inhibitors of metalloproteases with subclinical allograft fibrosis in renal transplantation. Transplant. Immunol. 2014, 30, 1-6.
-
(2014)
Transplant. Immunol.
, vol.30
, pp. 1-6
-
-
Hirt-Minkowski, P.1
Marti, H.P.2
Honger, G.3
Grandgirard, D.4
|