-
1
-
-
79958844000
-
Systems biology in animal sciences
-
PMID: 22440099
-
Woelders H, Te Pas MF, Bannink A, Veerkamp RF, Smits MA (2011) Systems biology in animal sciences. Animal 5: 1036-1047. doi: 10.1017/S1751731111000036 PMID: 22440099
-
(2011)
Animal
, vol.5
, pp. 1036-1047
-
-
Woelders, H.1
Te Pas, M.F.2
Bannink, A.3
Veerkamp, R.F.4
Smits, M.A.5
-
2
-
-
77954537532
-
Ontogenesis of muscle and adipose tissues and their interactions in ruminants and other species
-
PMID: 22444612
-
Bonnet M, Cassar-Malek I, Chilliard Y, Picard B (2010) Ontogenesis of muscle and adipose tissues and their interactions in ruminants and other species. Animal 4: 1093-1109. doi: 10.1017/S1751731110000601 PMID: 22444612
-
(2010)
Animal
, vol.4
, pp. 1093-1109
-
-
Bonnet, M.1
Cassar-Malek, I.2
Chilliard, Y.3
Picard, B.4
-
3
-
-
45849085174
-
In vivo proteome dynamics during early bovine myogenesis
-
PMID: 18924180
-
Chaze T, Meunier B, Chambon C, Jurie C, Picard B (2008) In vivo proteome dynamics during early bovine myogenesis. Proteomics 8: 4236-4248. doi: 10.1002/pmic.200701101 PMID: 18924180
-
(2008)
Proteomics
, vol.8
, pp. 4236-4248
-
-
Chaze, T.1
Meunier, B.2
Chambon, C.3
Jurie, C.4
Picard, B.5
-
4
-
-
84855736164
-
Cellular and molecular large-scale features of fetal adipose tissue: Is bovine perirenal adipose tissue brown?
-
PMID: 21678425
-
Taga H, Chilliard Y, Meunier B, Chambon C, Picard B, Zingaretti MC, et al. (2012) Cellular and molecular large-scale features of fetal adipose tissue: is bovine perirenal adipose tissue brown? J Cell Physiol 227: 1688-1700. doi: 10.1002/jcp.22893 PMID: 21678425
-
(2012)
J Cell Physiol
, vol.227
, pp. 1688-1700
-
-
Taga, H.1
Chilliard, Y.2
Meunier, B.3
Chambon, C.4
Picard, B.5
Zingaretti, M.C.6
-
5
-
-
68349150324
-
Proteome dynamics during contractile and metabolic differentiation of bovine foetal muscle
-
PMID: 22444818
-
Chaze T, Meunier B, Chambon C, Jurie C, Picard B (2009) Proteome dynamics during contractile and metabolic differentiation of bovine foetal muscle. Animal 3: 980-1000. doi: 10.1017/S1751731109004315 PMID: 22444818
-
(2009)
Animal
, vol.3
, pp. 980-1000
-
-
Chaze, T.1
Meunier, B.2
Chambon, C.3
Jurie, C.4
Picard, B.5
-
6
-
-
85012845904
-
Quest for Novel Muscle Pathway Biomarkers by Proteomics in Beef Production
-
Moo-Young M, editor Burlington: Academic Press
-
Picard B, Cassar-Malek I, Guillemin N, Bonnet M (2011) Quest for Novel Muscle Pathway Biomarkers by Proteomics in Beef Production. In: Moo-Young M, editor. Comprehensive Biotechnology (Second Edition). Burlington: Academic Press. pp. 395-405.
-
(2011)
Comprehensive Biotechnology (Second Edition)
, pp. 395-405
-
-
Picard, B.1
Cassar-Malek, I.2
Guillemin, N.3
Bonnet, M.4
-
7
-
-
84874841286
-
Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data
-
PMID: 23419240
-
Hudson NJ, Lyons RE, Reverter A, Greenwood PL, Dalrymple BP (2013) Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data. Gene Expr Patterns 13: 109-125. doi: 10.1016/j.gep.2013.02.001 PMID: 23419240
-
(2013)
Gene Expr Patterns
, vol.13
, pp. 109-125
-
-
Hudson, N.J.1
Lyons, R.E.2
Reverter, A.3
Greenwood, P.L.4
Dalrymple, B.P.5
-
8
-
-
84863744233
-
Ruminant metabolic systems biology: Reconstruction and integration of transcriptome dynamics underlying functional responses of tissues to nutrition and physiological state
-
PMID: 22807626
-
Bionaz M, Loor JJ (2012) Ruminant metabolic systems biology: reconstruction and integration of transcriptome dynamics underlying functional responses of tissues to nutrition and physiological state. Gene Regul Syst Bio 6: 109-125. doi: 10.4137/GRSB.S9852 PMID: 22807626
-
(2012)
Gene Regul Syst Bio
, vol.6
, pp. 109-125
-
-
Bionaz, M.1
Loor, J.J.2
-
9
-
-
84863920213
-
Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism
-
PMID: 23372424
-
Shahzad K, Loor JJ (2012) Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism. Curr Genomics 13: 379-394. doi: 10.2174/138920212801619269 PMID: 23372424
-
(2012)
Curr Genomics
, vol.13
, pp. 379-394
-
-
Shahzad, K.1
Loor, J.J.2
-
10
-
-
84891919459
-
Elucidation of molecular mechanisms of physiological variations between bovine subcutaneous and visceral fat depots under different nutritional regimes
-
PMID: 24349463
-
Romao JM, Jin W, He M, McAllister T, Guan le L (2013) Elucidation of molecular mechanisms of physiological variations between bovine subcutaneous and visceral fat depots under different nutritional regimes. PLoS One 8: e83211. doi: 10.1371/journal.pone.0083211 PMID: 24349463
-
(2013)
PLoS One
, vol.8
-
-
Romao, J.M.1
Jin, W.2
He, M.3
McAllister, T.4
Guan Le, L.5
-
11
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
PMID: 19033274
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S, et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25: 288-289. doi: 10.1093/bioinformatics/btn615 PMID: 19033274
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
12
-
-
60849139395
-
GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
-
PMID: 19192299
-
Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z (2009) GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10: 48. doi: 10.1186/1471-2105-10-48 PMID: 19192299
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 48
-
-
Eden, E.1
Navon, R.2
Steinfeld, I.3
Lipson, D.4
Yakhini, Z.5
-
13
-
-
70449356774
-
QuickGO: A web-based tool for Gene Ontology searching
-
PMID: 19744993
-
Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, Apweiler R (2009) QuickGO: a web-based tool for Gene Ontology searching. Bioinformatics 25: 3045-3046. doi: 10.1093/bioinformatics/btp536 PMID: 19744993
-
(2009)
Bioinformatics
, vol.25
, pp. 3045-3046
-
-
Binns, D.1
Dimmer, E.2
Huntley, R.3
Barrell, D.4
O'Donovan, C.5
Apweiler, R.6
-
14
-
-
78049480691
-
GeneCards Version 3: The human gene integrator
-
PMID: 20689021
-
Safran M, Dalah I, Alexander J, Rosen N, Iny Stein T, Shmoish M, et al. (2010) GeneCards Version 3: the human gene integrator. Database (Oxford) 2010: baq020. doi: 10.1093/database/baq020 PMID: 20689021
-
(2010)
Database (Oxford)
, vol.2010
-
-
Safran, M.1
Dalah, I.2
Alexander, J.3
Rosen, N.4
Iny Stein, T.5
Shmoish, M.6
-
15
-
-
58149181372
-
Michigan molecular interactions r2: From interacting proteins to pathways
-
PMID: 18978014
-
Tarcea VG, Weymouth T, Ade A, Bookvich A, Gao J, Mahavisno V, et al. (2009) Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res 37: D642-646. doi: 10.1093/nar/gkn722 PMID: 18978014
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D642-D646
-
-
Tarcea, V.G.1
Weymouth, T.2
Ade, A.3
Bookvich, A.4
Gao, J.5
Mahavisno, V.6
-
16
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
PMID: 22121220
-
Kerrien S, Aranda B, Breuza L, Bridge A, Broackes-Carter F, Chen C, et al. (2012) The IntAct molecular interaction database in 2012. Nucleic Acids Res 40: D841-846. doi: 10.1093/nar/gkr1088 PMID: 22121220
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D841-D846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
-
17
-
-
84874947727
-
The Bio- GRID interaction database: 2013 update
-
PMID: 23203989
-
Chatr-Aryamontri A, Breitkreutz BJ, Heinicke S, Boucher L, Winter A, Stark C, et al. (2013) The Bio- GRID interaction database: 2013 update. Nucleic Acids Res 41: D816-823. doi: 10.1093/nar/gks1158 PMID: 23203989
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D816-D823
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.J.2
Heinicke, S.3
Boucher, L.4
Winter, A.5
Stark, C.6
-
18
-
-
79959846617
-
PSICQUIC and PSISCORE: Accessing and scoring molecular interactions
-
PMID: 21716279
-
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, et al. (2011) PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods 8: 528-529. doi: 10.1038/nmeth.1637 PMID: 21716279
-
(2011)
Nat Methods
, vol.8
, pp. 528-529
-
-
Aranda, B.1
Blankenburg, H.2
Kerrien, S.3
Brinkman, F.S.4
Ceol, A.5
Chautard, E.6
-
19
-
-
84876515907
-
STRING v9.1: Protein-protein interaction networks, with increased coverage and integration
-
PMID: 23203871
-
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 41: D808-815. doi: 10.1093/nar/gks1094 PMID: 23203871
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D808-D815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
-
20
-
-
34548792342
-
APID2NET: Unified interactome graphic analyzer
-
PMID: 17644818
-
Hernandez-Toro J, Prieto C, De las Rivas J (2007) APID2NET: unified interactome graphic analyzer. Bioinformatics 23: 2495-2497. PMID: 17644818
-
(2007)
Bioinformatics
, vol.23
, pp. 2495-2497
-
-
Hernandez-Toro, J.1
Prieto, C.2
De Las Rivas, J.3
-
21
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
PMID: 10827456
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277. PMID: 10827456
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
22
-
-
52949132304
-
High-performance signal peptide prediction based on sequence alignment techniques
-
PMID: 18697773
-
Frank K, Sippl MJ (2008) High-performance signal peptide prediction based on sequence alignment techniques. Bioinformatics 24: 2172-2176. doi: 10.1093/bioinformatics/btn422 PMID: 18697773
-
(2008)
Bioinformatics
, vol.24
, pp. 2172-2176
-
-
Frank, K.1
Sippl, M.J.2
-
23
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
PMID: 21959131
-
Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786. doi: 10.1038/nmeth.1701 PMID: 21959131
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
24
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
PMID: 19131956
-
Huang DW, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57. doi: 10.1038/nprot.2008.211 PMID: 19131956
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
25
-
-
84856098655
-
Novel search method for the discovery of functional relationships
-
PMID: 22180409
-
Ramirez F, Lawyer G, Albrecht M (2012) Novel search method for the discovery of functional relationships. Bioinformatics 28: 269-276. doi: 10.1093/bioinformatics/btr631 PMID: 22180409
-
(2012)
Bioinformatics
, vol.28
, pp. 269-276
-
-
Ramirez, F.1
Lawyer, G.2
Albrecht, M.3
-
26
-
-
67849130563
-
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
-
PMID: 19465376
-
Chen J, Bardes EE, Aronow BJ, Jegga AG (2009) ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 37: W305-311. doi: 10.1093/nar/gkp427 PMID: 19465376
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W305-W311
-
-
Chen, J.1
Bardes, E.E.2
Aronow, B.J.3
Jegga, A.G.4
-
27
-
-
76649122816
-
Expander: From expression microarrays to networks and functions
-
PMID: 20134430
-
Ulitsky I, Maron-Katz A, Shavit S, Sagir D, Linhart C, Elkon R, et al. (2010) Expander: from expression microarrays to networks and functions. Nat Protoc 5: 303-322. doi: 10.1038/nprot.2009.230 PMID: 20134430
-
(2010)
Nat Protoc
, vol.5
, pp. 303-322
-
-
Ulitsky, I.1
Maron-Katz, A.2
Shavit, S.3
Sagir, D.4
Linhart, C.5
Elkon, R.6
-
28
-
-
0242559054
-
Pathway studio-the analysis and navigation of molecular networks
-
PMID: 14594725
-
Nikitin A, Egorov S, Daraselia N, Mazo I (2003) Pathway studio-the analysis and navigation of molecular networks. Bioinformatics 19: 2155-2157. PMID: 14594725
-
(2003)
Bioinformatics
, vol.19
, pp. 2155-2157
-
-
Nikitin, A.1
Egorov, S.2
Daraselia, N.3
Mazo, I.4
-
29
-
-
78651300217
-
AgBase: Supporting functional modeling in agricultural organisms
-
PMID: 21075795
-
McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, et al. (2011) AgBase: supporting functional modeling in agricultural organisms. Nucleic Acids Res 39: D497-506. doi: 10.1093/nar/gkq1115 PMID: 21075795
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D497-D506
-
-
McCarthy, F.M.1
Gresham, C.R.2
Buza, T.J.3
Chouvarine, P.4
Pillai, L.R.5
Kumar, R.6
-
30
-
-
84884669582
-
Bioinformatics tools for secretome analysis
-
PMID: 23395702
-
Caccia D, Dugo M, Callari M, Bongarzone I (2013) Bioinformatics tools for secretome analysis. Biochim Biophys Acta 1834: 2442-2453. doi: 10.1016/j.bbapap.2013.01.039 PMID: 23395702
-
(2013)
Biochim Biophys Acta
, vol.1834
, pp. 2442-2453
-
-
Caccia, D.1
Dugo, M.2
Callari, M.3
Bongarzone, I.4
-
31
-
-
84896053103
-
Adipose tissue and its role in organ crosstalk
-
PMID: 24495317
-
Romacho T, Elsen M, Rohrborn D, Eckel J (2014) Adipose tissue and its role in organ crosstalk. Acta Physiol (Oxf) 210: 733-753. doi: 10.1111/apha.12246 PMID: 24495317
-
(2014)
Acta Physiol (Oxf)
, vol.210
, pp. 733-753
-
-
Romacho, T.1
Elsen, M.2
Rohrborn, D.3
Eckel, J.4
-
32
-
-
79960976768
-
UniProt Knowledgebase: A hub of integrated protein data
-
Magrane M, Consortium U (2011) UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford) 2011: bar009.
-
(2011)
Database (Oxford)
, vol.2011
-
-
Magrane, M.1
Consortium, U.2
-
33
-
-
84876532610
-
Database resources of the National Center for Biotechnology Information
-
PMID: 23193264
-
Coordinators NR (2013) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 41: D8-D20. doi: 10.1093/nar/gks1189 PMID: 23193264
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D8-D20
-
-
Coordinators, N.R.1
-
34
-
-
1542399989
-
FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes
-
PMID: 14990455
-
Al-Shahrour F, Diaz-Uriarte R, Dopazo J (2004) FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 20: 578-580. PMID: 14990455
-
(2004)
Bioinformatics
, vol.20
, pp. 578-580
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
36
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
PMID: 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29. PMID: 10802651
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
37
-
-
77956548953
-
Cytoscape Web: An interactive web-based network browser
-
PMID: 20656902
-
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD (2010) Cytoscape Web: an interactive web-based network browser. Bioinformatics 26: 2347-2348. doi: 10.1093/bioinformatics/btq430 PMID: 20656902
-
(2010)
Bioinformatics
, vol.26
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
Bader, G.D.6
-
38
-
-
0038701886
-
The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes
-
PMID: 12752430
-
Nickel W (2003) The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes. Eur J Biochem 270: 2109-2119. PMID: 12752430
-
(2003)
Eur J Biochem
, vol.270
, pp. 2109-2119
-
-
Nickel, W.1
-
39
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
PMID: 17446895
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971. PMID: 17446895
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
40
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
PMID: 10891285
-
Emanuelsson O, Nielsen H, Brunak S, von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016. PMID: 10891285
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
41
-
-
0025183708
-
Basic local alignment search tool
-
PMID: 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410. PMID: 2231712
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
42
-
-
44449119819
-
A protein interaction network associated with asthma
-
PMID: 18395227
-
Hwang S, Son SW, Kim SC, Kim YJ, Jeong H, Lee D (2008) A protein interaction network associated with asthma. J Theor Biol 252: 722-731. doi: 10.1016/j.jtbi.2008.02.011 PMID: 18395227
-
(2008)
J Theor Biol
, vol.252
, pp. 722-731
-
-
Hwang, S.1
Son, S.W.2
Kim, S.C.3
Kim, Y.J.4
Jeong, H.5
Lee, D.6
-
43
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
PMID: 12368254
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res 12: 1611-1618. PMID: 12368254
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
-
44
-
-
3242878999
-
PrediSi: Prediction of signal peptides and their cleavage positions
-
PMID: 15215414
-
Hiller K, Grote A, Scheer M, Munch R, Jahn D (2004) PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res 32: W375-379. PMID: 15215414
-
(2004)
Nucleic Acids Res
, vol.32
, pp. W375-W379
-
-
Hiller, K.1
Grote, A.2
Scheer, M.3
Munch, R.4
Jahn, D.5
-
45
-
-
34547584314
-
Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server
-
PMID: 17483518
-
Kall L, Krogh A, Sonnhammer EL (2007) Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server. Nucleic Acids Res 35: W429-432. PMID: 17483518
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W429-W432
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
46
-
-
80054091686
-
Constructing a robust protein-protein interaction network by integrating multiple public databases
-
PMID: 22165958
-
Martha VS, Liu Z, Guo L, Su Z, Ye Y, Fang H, et al. (2011) Constructing a robust protein-protein interaction network by integrating multiple public databases. BMC Bioinformatics 12 Suppl 10: S7. doi: 10. 1186/1471-2105-12-S10-S7 PMID: 22165958
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S7
-
-
Martha, V.S.1
Liu, Z.2
Guo, L.3
Su, Z.4
Ye, Y.5
Fang, H.6
-
47
-
-
84893011280
-
Analysis of the bovine plasma proteome by matrix-assisted laser desorption/ionisation time-of-flight tandem mass spectrometry
-
PMID: 24268478
-
Henning AK, Groschup MH, Mettenleiter TC, Karger A (2014) Analysis of the bovine plasma proteome by matrix-assisted laser desorption/ionisation time-of-flight tandem mass spectrometry. Vet J 199: 175-180. doi: 10.1016/j.tvjl.2013.10.029 PMID: 24268478
-
(2014)
Vet J
, vol.199
, pp. 175-180
-
-
Henning, A.K.1
Groschup, M.H.2
Mettenleiter, T.C.3
Karger, A.4
-
48
-
-
0026554271
-
Expression of mRNAs for alpha-fetoprotein (AFP) and albumin and incorporation of AFP and docosahexaenoic acid in baboon fetuses
-
PMID: 1379224
-
Naval J, Calvo M, Laborda J, Dubouch P, Frain M, Sala-Trepat JM, et al. (1992) Expression of mRNAs for alpha-fetoprotein (AFP) and albumin and incorporation of AFP and docosahexaenoic acid in baboon fetuses. J Biochem 111: 649-654. PMID: 1379224
-
(1992)
J Biochem
, vol.111
, pp. 649-654
-
-
Naval, J.1
Calvo, M.2
Laborda, J.3
Dubouch, P.4
Frain, M.5
Sala-Trepat, J.M.6
-
49
-
-
41549097235
-
Characterization of human mesenchymal stem cell secretome at early steps of adipocyte and osteoblast differentiation
-
PMID: 18302751
-
Chiellini C, Cochet O, Negroni L, Samson M, Poggi M, Ailhaud G, et al. (2008) Characterization of human mesenchymal stem cell secretome at early steps of adipocyte and osteoblast differentiation. BMC Mol Biol 9: 26. doi: 10.1186/1471-2199-9-26 PMID: 18302751
-
(2008)
BMC Mol Biol
, vol.9
, pp. 26
-
-
Chiellini, C.1
Cochet, O.2
Negroni, L.3
Samson, M.4
Poggi, M.5
Ailhaud, G.6
-
50
-
-
61649088851
-
Comparison of isotope-labeled amino acid incorporation rates (CILAIR) provides a quantitative method to study tissue secretomes
-
PMID: 18840871
-
Roelofsen H, Dijkstra M, Weening D, de Vries MP, Hoek A, Vonk RJ (2009) Comparison of isotope-labeled amino acid incorporation rates (CILAIR) provides a quantitative method to study tissue secretomes. Mol Cell Proteomics 8: 316-324. doi: 10.1074/mcp.M800254-MCP200 PMID: 18840871
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 316-324
-
-
Roelofsen, H.1
Dijkstra, M.2
Weening, D.3
De Vries, M.P.4
Hoek, A.5
Vonk, R.J.6
-
51
-
-
77957373390
-
Temporal profiling of the secretome during adipogenesis in humans
-
PMID: 20707391
-
Zhong J, Krawczyk SA, Chaerkady R, Huang H, Goel R, Bader JS, et al. (2010) Temporal profiling of the secretome during adipogenesis in humans. J Proteome Res 9: 5228-5238. doi: 10.1021/pr100521c PMID: 20707391
-
(2010)
J Proteome Res
, vol.9
, pp. 5228-5238
-
-
Zhong, J.1
Krawczyk, S.A.2
Chaerkady, R.3
Huang, H.4
Goel, R.5
Bader, J.S.6
-
52
-
-
84896538646
-
On the formation of lipid droplets in human adipocytes: The organization of the perilipin-vimentin cortex
-
PMID: 24587346
-
Heid H, Rickelt S, Zimbelmann R, Winter S, Schumacher H, Dorflinger Y, et al. (2014) On the formation of lipid droplets in human adipocytes: the organization of the perilipin-vimentin cortex. PLoS One 9: e90386. doi: 10.1371/journal.pone.0090386 PMID: 24587346
-
(2014)
PLoS One
, vol.9
-
-
Heid, H.1
Rickelt, S.2
Zimbelmann, R.3
Winter, S.4
Schumacher, H.5
Dorflinger, Y.6
-
53
-
-
84930655602
-
fabp4 is central to eight obesity associated genes: A functional gene network-based polymorphic study
-
Bag S, Ramaiah S, Anbarasu A (2014) fabp4 is central to eight obesity associated genes: A functional gene network-based polymorphic study. J Theor Biol.
-
(2014)
J Theor Biol
-
-
Bag, S.1
Ramaiah, S.2
Anbarasu, A.3
-
54
-
-
2542568705
-
The human plasma proteome: A nonredundant list developed by combination of four separate sources
-
PMID: 14718574
-
Anderson NL, Polanski M, Pieper R, Gatlin T, Tirumalai RS, Conrads TP, et al. (2004) The human plasma proteome: a nonredundant list developed by combination of four separate sources. Mol Cell Proteomics 3: 311-326. PMID: 14718574
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 311-326
-
-
Anderson, N.L.1
Polanski, M.2
Pieper, R.3
Gatlin, T.4
Tirumalai, R.S.5
Conrads, T.P.6
-
55
-
-
0022487183
-
Plasma and cytoplasmic gelsolins are encoded by a single gene and contain a duplicated actin-binding domain
-
PMID: 3020431
-
Kwiatkowski DJ, Stossel TP, Orkin SH, Mole JE, Colten HR, Yin HL (1986) Plasma and cytoplasmic gelsolins are encoded by a single gene and contain a duplicated actin-binding domain. Nature 323: 455-458. PMID: 3020431
-
(1986)
Nature
, vol.323
, pp. 455-458
-
-
Kwiatkowski, D.J.1
Stossel, T.P.2
Orkin, S.H.3
Mole, J.E.4
Colten, H.R.5
Yin, H.L.6
-
56
-
-
84898597795
-
Secretome profiling of primary human skeletal muscle cells
-
PMID: 23994228
-
Hartwig S, Raschke S, Knebel B, Scheler M, Irmler M, Passlack W, et al. (2014) Secretome profiling of primary human skeletal muscle cells. Biochim Biophys Acta 1844: 1011-1017. doi: 10.1016/j.bbapap. 2013.08.004 PMID: 23994228
-
(2014)
Biochim Biophys Acta
, vol.1844
, pp. 1011-1017
-
-
Hartwig, S.1
Raschke, S.2
Knebel, B.3
Scheler, M.4
Irmler, M.5
Passlack, W.6
-
57
-
-
84870391450
-
In-depth analysis of the secretome identifies three major independent secretory pathways in differentiating human myoblasts
-
PMID: 23000592
-
Le Bihan MC, Bigot A, Jensen SS, Dennis JL, Rogowska-Wrzesinska A, Laine J, et al. (2012) In-depth analysis of the secretome identifies three major independent secretory pathways in differentiating human myoblasts. J Proteomics 77: 344-356. doi: 10.1016/j.jprot.2012.09.008 PMID: 23000592
-
(2012)
J Proteomics
, vol.77
, pp. 344-356
-
-
Le Bihan, M.C.1
Bigot, A.2
Jensen, S.S.3
Dennis, J.L.4
Rogowska-Wrzesinska, A.5
Laine, J.6
-
58
-
-
52749090551
-
Adiponectin is expressed by skeletal muscle fibers and influences muscle phenotype and function
-
PMID: 18463233
-
Krause MP, Liu Y, Vu V, Chan L, Xu A, Riddell MC, et al. (2008) Adiponectin is expressed by skeletal muscle fibers and influences muscle phenotype and function. Am J Physiol Cell Physiol 295: C203-212. doi: 10.1152/ajpcell.00030.2008 PMID: 18463233
-
(2008)
Am J Physiol Cell Physiol
, vol.295
, pp. C203-C212
-
-
Krause, M.P.1
Liu, Y.2
Vu, V.3
Chan, L.4
Xu, A.5
Riddell, M.C.6
-
59
-
-
30944449424
-
Changes of skeletal muscle adiponectin content in diet-induced insulin resistant rats
-
PMID: 16414018
-
Yang B, Chen L, Qian Y, Triantafillou JA, McNulty JA, Carrick K, et al. (2006) Changes of skeletal muscle adiponectin content in diet-induced insulin resistant rats. Biochem Biophys Res Commun 341: 209-217. PMID: 16414018
-
(2006)
Biochem Biophys Res Commun
, vol.341
, pp. 209-217
-
-
Yang, B.1
Chen, L.2
Qian, Y.3
Triantafillou, J.A.4
McNulty, J.A.5
Carrick, K.6
-
60
-
-
82355194699
-
Functional analysis of beef tenderness
-
PMID: 21855665
-
Guillemin N, Bonnet M, Jurie C, Picard B (2011) Functional analysis of beef tenderness. J Proteomics 75: 352-365. doi: 10.1016/j.jprot.2011.07.026 PMID: 21855665
-
(2011)
J Proteomics
, vol.75
, pp. 352-365
-
-
Guillemin, N.1
Bonnet, M.2
Jurie, C.3
Picard, B.4
-
61
-
-
84899894857
-
Heat-shock protein beta 1 regulates androgen-mediated bovine myogenesis
-
PMID: 24563320
-
Zhang Q, Lee HG, Kang SK, Baik M, Choi YJ (2014) Heat-shock protein beta 1 regulates androgen-mediated bovine myogenesis. Biotechnol Lett 36: 1225-1231. doi: 10.1007/s10529-014-1489-2 PMID: 24563320
-
(2014)
Biotechnol Lett
, vol.36
, pp. 1225-1231
-
-
Zhang, Q.1
Lee, H.G.2
Kang, S.K.3
Baik, M.4
Choi, Y.J.5
-
62
-
-
84880197347
-
Selection of reference genes for quantitative real-time PCR normalisation in adipose tissue, muscle, liver and mammary gland from ruminants
-
PMID: 23552195
-
Bonnet M, Bernard L, Bes S, Leroux C (2013) Selection of reference genes for quantitative real-time PCR normalisation in adipose tissue, muscle, liver and mammary gland from ruminants. Animal 7: 1344-1353. doi: 10.1017/S1751731113000475 PMID: 23552195
-
(2013)
Animal
, vol.7
, pp. 1344-1353
-
-
Bonnet, M.1
Bernard, L.2
Bes, S.3
Leroux, C.4
-
63
-
-
84876535013
-
Identification and validation of novel contraction-regulated myokines released from primary human skeletal muscle cells
-
PMID: 23637948
-
Raschke S, Eckardt K, Bjorklund Holven K, Jensen J, Eckel J (2013) Identification and validation of novel contraction-regulated myokines released from primary human skeletal muscle cells. PLoS One 8: e62008. doi: 10.1371/journal.pone.0062008 PMID: 23637948
-
(2013)
PLoS One
, vol.8
-
-
Raschke, S.1
Eckardt, K.2
Bjorklund Holven, K.3
Jensen, J.4
Eckel, J.5
-
64
-
-
48549087683
-
Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis
-
PMID: 18637193
-
Scheideler M, Elabd C, Zaragosi LE, Chiellini C, Hackl H, Sanchez-Cabo F, et al. (2008) Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis. BMC Genomics 9: 340. doi: 10.1186/1471-2164-9-340 PMID: 18637193
-
(2008)
BMC Genomics
, vol.9
, pp. 340
-
-
Scheideler, M.1
Elabd, C.2
Zaragosi, L.E.3
Chiellini, C.4
Hackl, H.5
Sanchez-Cabo, F.6
-
65
-
-
23644450775
-
Reduction of macrophage infiltration and chemoattractant gene expression changes in white adipose tissue of morbidly obese subjects after surgery-induced weight loss
-
PMID: 16046292
-
Cancello R, Henegar C, Viguerie N, Taleb S, Poitou C, Rouault C, et al. (2005) Reduction of macrophage infiltration and chemoattractant gene expression changes in white adipose tissue of morbidly obese subjects after surgery-induced weight loss. Diabetes 54: 2277-2286. PMID: 16046292
-
(2005)
Diabetes
, vol.54
, pp. 2277-2286
-
-
Cancello, R.1
Henegar, C.2
Viguerie, N.3
Taleb, S.4
Poitou, C.5
Rouault, C.6
-
66
-
-
84878755885
-
Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing
-
PMID: 23762238
-
He H, Liu X (2013) Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing. PLoS One 8: e64356. doi: 10.1371/journal.pone.0064356 PMID: 23762238
-
(2013)
PLoS One
, vol.8
-
-
He, H.1
Liu, X.2
-
67
-
-
38949173060
-
Sex-related differences in gene expression in human skeletal muscle
-
PMID: 18167544
-
Welle S, Tawil R, Thornton CA (2008) Sex-related differences in gene expression in human skeletal muscle. PLoS One 3: e1385. doi: 10.1371/journal.pone.0001385 PMID: 18167544
-
(2008)
PLoS One
, vol.3
-
-
Welle, S.1
Tawil, R.2
Thornton, C.A.3
-
68
-
-
84893342110
-
Transcriptional background of beef marbling-novel genes implicated in intramuscular fat deposition
-
PMID: 24491505
-
Sadkowski T, Ciecierska A, Majewska A, Oprzadek J, Dasiewicz K, Ollik M, et al. (2014) Transcriptional background of beef marbling-novel genes implicated in intramuscular fat deposition. Meat Sci 97: 32-41. doi: 10.1016/j.meatsci.2013.12.017 PMID: 24491505
-
(2014)
Meat Sci
, vol.97
, pp. 32-41
-
-
Sadkowski, T.1
Ciecierska, A.2
Majewska, A.3
Oprzadek, J.4
Dasiewicz, K.5
Ollik, M.6
-
69
-
-
68849102148
-
Skeletal muscle gene expression after myostatin knock-out in mature mice
-
PMID: 19509079
-
Welle S, Cardillo A, Zanche M, Tawil R (2009) Skeletal muscle gene expression after myostatin knock-out in mature mice. Physiol Genomics 38: 342-350. doi: 10.1152/physiolgenomics.00054.2009 PMID: 19509079
-
(2009)
Physiol Genomics
, vol.38
, pp. 342-350
-
-
Welle, S.1
Cardillo, A.2
Zanche, M.3
Tawil, R.4
-
70
-
-
82755184961
-
Proteomic analysis of tumor necrosis factor-alpha (TNF-alpha)-induced L6 myotube secretome reveals novel TNF-alpha-dependent myokines in diabetic skeletal muscle
-
PMID: 22023146
-
Yoon JH, Song P, Jang JH, Kim DK, Choi S, Kim J, et al. (2011) Proteomic analysis of tumor necrosis factor-alpha (TNF-alpha)-induced L6 myotube secretome reveals novel TNF-alpha-dependent myokines in diabetic skeletal muscle. J Proteome Res 10: 5315-5325. doi: 10.1021/pr200573b PMID: 22023146
-
(2011)
J Proteome Res
, vol.10
, pp. 5315-5325
-
-
Yoon, J.H.1
Song, P.2
Jang, J.H.3
Kim, D.K.4
Choi, S.5
Kim, J.6
-
71
-
-
84876943604
-
Reviewing and updating the major molecular markers for stem cells
-
PMID: 23336433
-
Calloni R, Cordero EA, Henriques JA, Bonatto D (2013) Reviewing and updating the major molecular markers for stem cells. Stem Cells Dev 22: 1455-1476. doi: 10.1089/scd.2012.0637 PMID: 23336433
-
(2013)
Stem Cells Dev
, vol.22
, pp. 1455-1476
-
-
Calloni, R.1
Cordero, E.A.2
Henriques, J.A.3
Bonatto, D.4
-
72
-
-
77955053389
-
Characterization of distinct mesenchymal-like cell populations from human skeletal muscle in situ and in vitro
-
PMID: 20430024
-
Lecourt S, Marolleau JP, Fromigue O, Vauchez K, Andriamanalijaona R, Ternaux B, et al. (2010) Characterization of distinct mesenchymal-like cell populations from human skeletal muscle in situ and in vitro. Exp Cell Res 316: 2513-2526. doi: 10.1016/j.yexcr.2010.04.020 PMID: 20430024
-
(2010)
Exp Cell Res
, vol.316
, pp. 2513-2526
-
-
Lecourt, S.1
Marolleau, J.P.2
Fromigue, O.3
Vauchez, K.4
Andriamanalijaona, R.5
Ternaux, B.6
-
73
-
-
84905901298
-
Autophagy is required and protects against apoptosis during myoblast differentiation
-
PMID: 24865278
-
McMillan EM, Quadrilatero J (2014) Autophagy is required and protects against apoptosis during myoblast differentiation. Biochem J 462: 267-277. doi: 10.1042/BJ20140312 PMID: 24865278
-
(2014)
Biochem J
, vol.462
, pp. 267-277
-
-
McMillan, E.M.1
Quadrilatero, J.2
-
74
-
-
84908654487
-
-
Differentiation
-
Skop V, Cahova M, Dankova H, Papackova Z, Palenickova E, Svoboda P, et al. (2014) Autophagy inhibition in early but not in later stages prevents 3T3-L1 differentiation: Effect on mitochondrial remodeling. Differentiation.
-
(2014)
Autophagy Inhibition in Early but not in Later Stages Prevents 3T3-L1 Differentiation: Effect on Mitochondrial Remodeling
-
-
Skop, V.1
Cahova, M.2
Dankova, H.3
Papackova, Z.4
Palenickova, E.5
Svoboda, P.6
-
75
-
-
73449117508
-
Targeted deletion of autophagy-related 5 (atg5) impairs adipogenesis in a cellular model and in mice
-
PMID: 19844159
-
Baerga R, Zhang Y, Chen PH, Goldman S, Jin S (2009) Targeted deletion of autophagy-related 5 (atg5) impairs adipogenesis in a cellular model and in mice. Autophagy 5: 1118-1130. PMID: 19844159
-
(2009)
Autophagy
, vol.5
, pp. 1118-1130
-
-
Baerga, R.1
Zhang, Y.2
Chen, P.H.3
Goldman, S.4
-
76
-
-
84883488843
-
Autophagy in Myf5+ progenitors regulates energy and glucose homeostasis through control of brown fat and skeletal muscle development
-
PMID: 23907538
-
Martinez-Lopez N, Athonvarangkul D, Sahu S, Coletto L, Zong H, Bastie CC, et al. (2013) Autophagy in Myf5+ progenitors regulates energy and glucose homeostasis through control of brown fat and skeletal muscle development. EMBO Rep 14: 795-803. doi: 10.1038/embor.2013.111 PMID: 23907538
-
(2013)
EMBO Rep
, vol.14
, pp. 795-803
-
-
Martinez-Lopez, N.1
Athonvarangkul, D.2
Sahu, S.3
Coletto, L.4
Zong, H.5
Bastie, C.C.6
|