Ecological effects of combined pollution associated with e-waste recycling on the composition and diversity of soil microbial communities

Environmental Science and Technology

Volumn 49, Issue 11, 2015, Pages 6438-6447

  Liu, Jun ^a   He, Xiao Xin ^a   Lin, Xue Rui ^b   Chen, Wen Ce ^a   Zhou, Qi Xing ^c   Shu, Wen Sheng ^a   Huang, Li Nan ^a  

^a SUN YAT SEN UNIVERSITY   (China)

^b SOUTH CHINA INSTITUTE OF ENVIRONMENTAL SCIENCES   (China)

^c NANKAI UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CONTAMINATION; ECOLOGY; ELECTRONIC EQUIPMENT; ETHERS; HEAVY METALS; MICROORGANISMS; ORGANIC POLLUTANTS; POLLUTION; RECYCLING; REMEDIATION; RNA; SOILS; WASTES;

CANONICAL CORRESPONDENCE ANALYSIS; DECABROMODIPHENYL ETHERS (BDE209); ELECTRONIC WASTE (E WASTE); ENVIRONMENTAL VARIABLES; HIGH-THROUGHPUT SEQUENCING; PHYSIOCHEMICAL PARAMETERS; POLYBROMINATED DIPHENYL ETHER (PBDES); SOIL MICROBIAL COMMUNITY;

SOIL POLLUTION;

COPPER; POLYCHLORINATED BIPHENYL; RNA 16S; DECABROMOBIPHENYL ETHER; DIPHENYL ETHER DERIVATIVE; HEAVY METAL; SOIL; SOIL POLLUTANT;

ECOLOGICAL IMPACT; MICROBIAL COMMUNITY; POLLUTION EFFECT; RECYCLING; SOIL MICROORGANISM; SOIL REMEDIATION; TAXONOMY;

ACIDOBACTERIA; ACINETOBACTER; ALCANIVORAX; ARTICLE; BACTEROIDETES; CONTROLLED STUDY; CORRESPONDENCE ANALYSIS; ELECTRONIC WASTE; FIRMICUTES; HIGH THROUGHPUT SEQUENCING; MICROBIAL COMMUNITY; MOISTURE; NONHUMAN; POLLUTANT; POLLUTION; PROTEOBACTERIA; PSEUDOMONAS; RECYCLING; SOIL MICROFLORA; ANALYSIS; BACTERIUM; BIODIVERSITY; CHINA; CLASSIFICATION; DRUG EFFECTS; ECOSYSTEM; GENETICS; MICROBIAL CONSORTIUM; MICROBIOLOGY; PHYLOGENY; SOIL; SOIL POLLUTANT; TOXICITY;

CHINA; GUANGDONG; GUIYU;

ACIDOBACTERIA; ACINETOBACTER; ALCANIVORAX; BACTERIA (MICROORGANISMS); BACTEROIDETES; FIRMICUTES; PROTEOBACTERIA; PSEUDOMONAS;

BACTERIA; BIODIVERSITY; CHINA; COPPER; ECOSYSTEM; ELECTRONIC WASTE; HALOGENATED DIPHENYL ETHERS; METALS, HEAVY; MICROBIAL CONSORTIA; PHYLOGENY; POLYCHLORINATED BIPHENYLS; RECYCLING; RNA, RIBOSOMAL, 16S; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

EID: 84930656450     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es5049804     Document Type: Article

References (54)

1. E-waste, the hidden side of IT equipment's manufacturing and use; Environment Alert Bulletin 5; UNEP DEWA/GRID-Europe: Nairobi, Kenya, 2005.
2. Wong, M. H.; Wu, S. C.; Deng, W. J.; Yu, X. Z.; Luo, Q.; Leung, A. O.; Wong, C. S.; Luksemburg, W. J.; Wong, A. S. Export of toxic chemicals-a review of the case of uncontrolled electronic-waste recycling Environ. Pollut. 2007, 149 (2) 131-140
3. U.S. Environmental Protection Agency. Statistics on the Management of Used and End-of-Life Electronics, accessed 2012.
4. Robinson, B. H. E-waste: an assessment of global production and environmental impacts Sci. Total Environ. 2009, 408 (2) 183-191
5. Turpeinen, R.; Kairesalo, T.; Häggblom, M. M. Microbial community structure and activity in arsenic-, chromium- and copper-contaminated soils FEMS Microbiol. Ecol. 2004, 47 (1) 39-50
6. Brantner, J. S.; Senko, J. M. Response of soil-associated microbial communities to intrusion of coal mine-derived acid mine drainage Environ. Sci. Technol. 2014, 48 (15) 8556-8563
7. Wang, Y.; Shi, J.; Wang, H.; Lin, Q.; Chen, X.; Chen, Y. The influence of soil heavy metals pollution on soil microbial biomass, enzyme activity, and community composition near a copper smelter Ecotoxicol. Environ. Safety 2007, 67 (1) 75-81
8. Smit, E.; Leeflang, P.; Wernars, K. Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis FEMS Microbiol. Ecol. 1997, 23 (3) 249-261
9. Gianfreda, L.; Rao, M. A. Potential of extra cellular enzymes in remediation of polluted soils: a review Enzyme Microb. Technol. 2004, 35 (4) 339-354
10. Bååth, E. Effects of heavy metals in soil on microbial processes and populations (a review) Water Air Soil Poll. 1989, 47 (3-4) 335-379
11. Giller, K. E.; Witter, E.; Mcgrath, S. P. Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review Soil Biol. Biochem. 1998, 30 (10-11) 1389-1414
12. Gołębiewski, M.; Deja-Sikora, E.; Cichosz, M.; Tretyn, A.; Wróbel, B. 16S rDNA pyrosequencing analysis of bacterial community in heavy metals polluted soils Microb. Ecol. 2014, 67 (3) 635-647
13. Tang, X.; Qiao, J.; Chen, C.; Chen, L.; Yu, C.; Shen, C.; Chen, Y. Bacterial communities of polychlorinated biphenyls polluted soil around an e-waste recycling workshop Soil Sedimet. Contam. 2013, 22, 562-573
14. Nogales, B.; Moore1, E. R.; Llobet-Brossa, E.; Rossello-Mora, R.; Amann, R.; Timmis, K. N. Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil Appl. Environ. Microbiol. 2001, 67 (4) 1874-1884
15. Zhang, W.; Wang, H.; Zhang, R.; Yu, X. Z.; Qian, P. Y.; Wong, M. H. Bacterial communities in PAH contaminated soils at an electronic-waste processing center in China Ecotoxicology 2010, 19 (1) 96-104
16. Mazzoli, R.; Pessione, E.; Giuffrida, M.; Fattori, P.; Barello, C.; Giunta, C.; Lindley, N. D. Degradation of aromatic compounds by Acinetobacter radioresistens S13: growth characteristics on single substrates and mixtures Arch. Microbiol. 2007, 188, 55-68
17. Liang, R. B.; Liu, H.; Tao, F.; Liu, Y.; Ma, C.; Liu, X. P.; Liu, J. H. Genome sequence of Pseudomonas putida Strain SJTE-1, a bacterium capable of degrading estrogens and persistent organic pollutants J. Bacteriol. 2012, 194 (17) 4781-4782
18. Golyshin, P. N.; Martins Dos Santos, V. A.; Kaiser, O.; Ferrer, M.; Sabirova, Y. S.; Lünsdorf, H.; Chernikova, T. N.; Golyshina, O. V.; Yakimov, M. M.; Pühler, A.; Timmis, K. N. Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems J. Biotechnol. 2003, 106 (2-3) 215-220
19. Field, J. A.; Sierra-Alvarez, R. Microbial transformation and degradation of polychlorinated biphenyls Environ. Pollut. 2008, 155 (1) 1-12
20. Haritash, A. K.; Kaushik, C. P. Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review J. Hazard. Mater. 2009, 169 (1-3) 1-15
21. Robrock, K. R.; Coelhan, M.; Sedlak, D. L.; Alvarez-Cohent, L. Aerobic biotransformation of polybrominated diphenyl ethers (PBDEs) by bacterial isolates Environ. Sci. Technol. 2009, 43 (15) 5705-5711
22. Zhu, W.; Liu, L.; Zou, P.; Xiao, L.; Yang, L. Y. Effect of decabromodiphenyl ether (BDE 209) on soil microbial activity and bacterial community composition World J. Microbiol. Biotechnol. 2010, 26 (10) 1891-1899
23. Zhang, W.; Zhang, M.; An, S.; Lin, K.; Li, H.; Cui, C.; Fu, R.; Zhu, J. The combined effect of decabromodiphenyl ether (BDE-209) and copper (Cu) on soil enzyme activities and microbial community structure Environ. Toxicol. Pharmacol. 2012, 34, 358-369
24. Muhammad, A.; Xu, J.; Li, Z.; Wang, H.; Yao, H. Effects of lead and cadmium nitrate on biomass and substrate utilization pattern of soil microbial communities Chemosphere 2005, 60 (4) 508-514
25. Tang, X.; Hashmi, M. Z.; Long, D.; Chen, L.; Khan, M. I.; Shen, C. Influence of heavy metals and PCBs pollution on the enzyme activity and microbial community of paddy soils around an e-waste recycling workshop Int. J. Environ. Res. Public Health 2014, 11 (3) 3118-3131
26. Leung, A. O.; Luksemburg, W. J.; Wong, A. S.; Wong, M. H. Spatial distribution of polybrominated diphenyl ethers and polychlorinated dibenzo- p -dioxins and dibenzofurans in soil and combusted residue at Guiyu, an electronic waste recycling site in southeast China Environ. Sci. Technol. 2007, 41 (8) 2730-2737
27. Page, A. L.; Miller, R. H.; Keeney, D. R. Methods of Soil Analysis, Part 2 Chemical and Microbiological Properties, 2 nd ed.; American Society of Agronomy: Madison, WI, 1982.
28. Zou, M. Y.; Ran, Y.; Gong, J.; Mai, B. X.; Zeng, E. Y. Polybrominated diphenyl ethers in watershed soils of the Pearl River Delta, China: occurrence, inventory, and fate Environ. Sci. Technol. 2007, 41 (24) 8262-8267
29. Ren, N. Q.; Que, M. X.; Li, Y. F.; Liu, Y.; Wan, X. N.; Xu, D. D.; Sverko, E.; Ma, J. M. Polychlorinated biphenyls in Chinese surface soils Environ. Sci. Technol. 2007, 41 (11) 3871-3876
30. Bates, S. T.; Berg-Lyons, D.; Caporaso, J. G.; Walters, W. A.; Knight, R.; Fierer, N. Examining the global distribution of dominant archaeal populations in soil ISME J. 2011, 5, 908-917
31. Liu, Z.; Lozupone, C.; Hamady, M.; Bushman, F. D.; Knight, R. Short pyrosequencing reads suffice for accurate microbial community analysis Nucleic Acids Res. 2007, 35, e120
32. Liu, J.; Hua, Z. H.; Chen, L. X.; Kuang, J. L.; Li, S. J.; Shu, W. S.; Huang, L. N. Correlating microbial diversity patterns with geochemistry in an extreme and heterogeneous environment of mine tailings Appl. Environ. Microbiol. 2014, 80 (12) 3677-3686
33. Kozich, J. J.; Westcott, S. L.; Baxter, N. T.; Highlander, S. K.; Schloss, P. D. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the Miseq Illumina sequencing platform Appl. Environ. Microbiol. 2013, 79 (17) 5112-5120
34. Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads Nat. Methods 2013, 10, 996-998
35. Price, M. N.; Dehal, P. S.; Arkin, A. P. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix Mol. Biol. Evol. 2009, 26, 1641-1650
36. Wang, Q.; Garrity, G. M.; Tiedje, J. M.; Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy Appl. Environ. Microbiol. 2007, 73, 5261-5267
37. Yatsunenko, T.; Rey, F. E.; Manary, M. J.; Trehan, I.; Dominguez-Bello, M. G.; Contreras, M.; Magris, M.; Hidalgo, G.; Baldassano, R. N.; Anokhin, A. P.; Heath, A. C.; Warner, B.; Reeder, J.; Kuczynski, J.; Caporaso, J. G.; Lozupone, C. A.; Lauber, C.; Clemente, J. C.; Knights, D.; Knight, R.; Gordon, J. I. Human gut microbiome viewed across age and geography Nature 2012, 486, 222-227
38. Clarke, K. R.; Ainsworth, M. A method of linking multivariate community structure to environmental variables Mar. Ecol-Prog. Ser. 1993, 92, 205-219
39. ter Braak, C. J. F. Canonical correspondence analysis: a new eigenvector method for multivariate direct gradient analysis Ecology 1986, 67 (5) 1167-1179
40. Mai, B.; Chen, S.; Luo, X.; Chen, L.; Yang, Q.; Sheng, G.; Peng, P.; Fu, J.; Zeng, E. Y. Distribution of polybrominated diphenyl ethers in sediments of the Pearl River Delta and adjacent South China Sea Environ. Sci. Technol. 2005, 39 (10) 3521-3527
41. Taira, K.; Hayase, N.; Arimura, N.; Yamashita, S.; Miyazaki, T.; Furukawa, K. Cloning and nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene from the PCB-degrading strain of Pseudomonas paucimobilis Q1 Biochemistry 1988, 27 (11) 3990-3996
42. Zhang, S. W.; Xia, X. H.; Xia, N.; Wu, S.; Gao, F.; Zhou, W. W. Identification and biodegradation efficiency of a newly isolated 2,2′,4,4′-tetrabromodiphenyl ether (BDE-47) aerobic degrading bacterial strain Int. Biodeter. Biodegr. 2013, 76, 24-31
43. Hassen, A.; Saidi, N.; Cherif, M.; Boudabous, A. Effects of heavy metals on Pseudomonas aeruginosa and Bacillus thuringiensis Bioresour. Technol. 1998, 65, 73-82
44. Zakaria, Z. A.; Zakaria, Z.; Surif, S.; Ahmad, W. A. Hexavalent chromium reduction by Acinetobacter haemolyticus isolated from heavy-metal contaminated wastewater J. Hazard. Mater. 2007, 146 (1-2) 30-38
45. Wyszkowska, J.; Kucharski, M.; Kucharski, J.; Borowik, A. Activity of dehydrogenases, catalase and urease in copper polluted soil J. Elementol. 2009, 14 (3) 605-617
46. Andreazza, R.; Okeke, B. C.; Pieniz, S.; Camargo, F. A. Characterization of copper-resistant rhizosphere bacteria from Avena sativa and Plantago lanceolata for copper bioreduction and biosorption Biol. Trace Elem. Res. 2012, 146, 107-115
47. Kunito, T.; Saeki, K.; Nagaoka, K.; Oyaizu, H.; Matsumoto, S. Characterization of copper-resistant bacterial community in rhizosphere of highly copper-contaminated soil Eur. J. Soil Biol. 2001, 37, 95-102
48. Schimel, J. P.; Gulledge, J. M.; Clein-Curley, J. S.; Lindstrom, J. E.; Braddock, J. F. Moisture effects on microbial activity and community structure in decomposing birch litter in the Alaskan taiga Soil Biol. Biochem. 1999, 31 (6) 831-838
49. Brockett, B. F.; Prescott, C. E.; Grayston, S. J. Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada Soil Biol. Biochem. 2012, 44 (1) 9-20
50. Kodama, Y.; Watanabe, K. Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity Int. J. Syst. Evol. Microbiol. 2004, 54 (6) 2297-2300
51. Liu, L.; Zhu, W.; Xiao, L.; Yang, L. Y. Effect of decabromodiphenyl ether (BDE 209) and dibromodiphenyl ether (BDE 15) on soil microbial activity and bacterial community composition J. Hazard. Mater. 2011, 186 (1) 883-890
52. Kasai, Y.; Kishira, H.; Sasaki, T.; Syutsubo, K.; Watanabe, K.; Harayama, S. Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water Environ. Microbiol. 2002, 4 (3) 141-147
53. Rojo, F. Degradation of alkanes by bacteria Environ. Microbiol. 2009, 11 (10) 2477-2490
54. Söderstrom, G.; Sellström, U.; de Wit, C. A.; Tysklind, M. Photolytic debromination of decabromodiphenyl ether (BDE 209) Environ. Sci. Technol. 2004, 38 (1) 127-132