-
1
-
-
84885647278
-
Connecting genomic alterations to cancer biology with proteomics: The NCI Clinical Proteomic Tumor Analysis Consortium
-
Ellis, M. J.; Gillette, M.; Carr, S. A.; Paulovich, A. G.; Smith, R. D.; Rodland, K. K.; Townsend, R. R.; Kinsinger, C.; Mesri, M.; Rodriguez, H. Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium Cancer Discovery 2013, 3, 1108-1112
-
(2013)
Cancer Discovery
, vol.3
, pp. 1108-1112
-
-
Ellis, M.J.1
Gillette, M.2
Carr, S.A.3
Paulovich, A.G.4
Smith, R.D.5
Rodland, K.K.6
Townsend, R.R.7
Kinsinger, C.8
Mesri, M.9
Rodriguez, H.10
-
2
-
-
67650382229
-
Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: The Amsterdam Principles
-
Rodriguez, H.; Snyder, M.; Uhlén, M.; Andrews, P.; Beavis, R.; Borchers, C.; Chalkley, R. J.; Cho, S. Y.; Cottingham, K.; Dunn, M. Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: The Amsterdam Principles J. Proteome Res. 2009, 8, 3689-3692
-
(2009)
J. Proteome Res.
, vol.8
, pp. 3689-3692
-
-
Rodriguez, H.1
Snyder, M.2
Uhlén, M.3
Andrews, P.4
Beavis, R.5
Borchers, C.6
Chalkley, R.J.7
Cho, S.Y.8
Cottingham, K.9
Dunn, M.10
-
3
-
-
84863012827
-
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)
-
Kinsinger, C. R.; Apffel, J.; Baker, M.; Bian, X.; Borchers, C. H.; Bradshaw, R.; Brusniak, M.-Y.; Chan, D. W.; Deutsch, E. W.; Domon, B. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles) J. Proteome Res. 2011, 11, 1412-1419
-
(2011)
J. Proteome Res.
, vol.11
, pp. 1412-1419
-
-
Kinsinger, C.R.1
Apffel, J.2
Baker, M.3
Bian, X.4
Borchers, C.H.5
Bradshaw, R.6
Brusniak, M.-Y.7
Chan, D.W.8
Deutsch, E.W.9
Domon, B.10
-
4
-
-
48949104656
-
MzML: A single, unifying data format for mass spectrometer output
-
Deutsch, E. mzML: a single, unifying data format for mass spectrometer output Proteomics 2008, 8, 2776-2777
-
(2008)
Proteomics
, vol.8
, pp. 2776-2777
-
-
Deutsch, E.1
-
5
-
-
78651082595
-
MzML-a community standard for mass spectrometry data
-
Martens, L.; Chambers, M.; Sturm, M.; Kessner, D.; Levander, F.; Shofstahl, J.; Tang, W. H.; Römpp, A.; Neumann, S.; Pizarro, A. D. mzML-a community standard for mass spectrometry data Mol. Cell. Proteomics 2011, 10, R110.000133
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. 110000133
-
-
Martens, L.1
Chambers, M.2
Sturm, M.3
Kessner, D.4
Levander, F.5
Shofstahl, J.6
Tang, W.H.7
Römpp, A.8
Neumann, S.9
Pizarro, A.D.10
-
6
-
-
76149142168
-
Repeatability and reproducibility in proteomic identifications by liquid chromatography tandem mass spectrometry
-
Tabb, D. L.; Vega-Montoto, L.; Rudnick, P. A.; Variyath, A. M.; Ham, A.-J. L.; Bunk, D. M.; Kilpatrick, L. E.; Billheimer, D. D.; Blackman, R. K.; Cardasis, H. L. Repeatability and reproducibility in proteomic identifications by liquid chromatography tandem mass spectrometry J. Proteome Res. 2010, 9, 761-776
-
(2010)
J. Proteome Res.
, vol.9
, pp. 761-776
-
-
Tabb, D.L.1
Vega-Montoto, L.2
Rudnick, P.A.3
Variyath, A.M.4
Ham, A.-J.L.5
Bunk, D.M.6
Kilpatrick, L.E.7
Billheimer, D.D.8
Blackman, R.K.9
Cardasis, H.L.10
-
7
-
-
67650564834
-
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring based measurements of proteins in plasma
-
Addona, T. A.; Abbatiello, S. E.; Schilling, B.; Skates, S. J.; Mani, D. R.; Bunk, D. M.; Spiegelman, C. H.; Zimmerman, L. J.; Ham, A.-J. L.; Keshishian, H. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring based measurements of proteins in plasma Nat. Biotechnol. 2009, 27, 633-641
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 633-641
-
-
Addona, T.A.1
Abbatiello, S.E.2
Schilling, B.3
Skates, S.J.4
Mani, D.R.5
Bunk, D.M.6
Spiegelman, C.H.7
Zimmerman, L.J.8
Ham, A.-J.L.9
Keshishian, H.10
-
8
-
-
84907339922
-
Site-specific mapping and quantification of protein S-sulphenylation in cells
-
Yang, J.; Gupta, V.; Carroll, K. S.; Liebler, D. C. Site-specific mapping and quantification of protein S-sulphenylation in cells. Nat. Commun. 2014, 5.
-
(2014)
Nat. Commun.
, vol.5
-
-
Yang, J.1
Gupta, V.2
Carroll, K.S.3
Liebler, D.C.4
-
9
-
-
84907269780
-
Proteogenomic characterization of human colon and rectal cancer
-
Zhang, B.; Wang, J.; Wang, X.; Zhu, J.; Liu, Q.; Shi, Z.; Chambers, M. C.; Zimmerman, L. J.; Shaddox, K. F.; Kim, S. Proteogenomic characterization of human colon and rectal cancer Nature 2014, 513, 382-387
-
(2014)
Nature
, vol.513
, pp. 382-387
-
-
Zhang, B.1
Wang, J.2
Wang, X.3
Zhu, J.4
Liu, Q.5
Shi, Z.6
Chambers, M.C.7
Zimmerman, L.J.8
Shaddox, K.F.9
Kim, S.10
-
10
-
-
84904111890
-
Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels
-
Mertins, P.; Yang, F.; Liu, T.; Mani, D. R.; Petyuk, V. A.; Gillette, M. A.; Clauser, K. R.; Qiao, J. W.; Gritsenko, M. A.; Moore, R. J. Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Mol. Cell. Proteomics 2014, 13, 1690-1704
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1690-1704
-
-
Mertins, P.1
Yang, F.2
Liu, T.3
Mani, D.R.4
Petyuk, V.A.5
Gillette, M.A.6
Clauser, K.R.7
Qiao, J.W.8
Gritsenko, M.A.9
Moore, R.J.10
-
11
-
-
84859868686
-
The mzIdentML data standard for mass spectrometry-based proteomics results
-
Jones, A. R.; Eisenacher, M.; Mayer, G.; Kohlbacher, O.; Siepen, J.; Hubbard, S. J.; Selley, J. N.; Searle, B. C.; Shofstahl, J.; Seymour, S. L. The mzIdentML data standard for mass spectrometry-based proteomics results Mol. Cell. Proteomics 2012, 11, M111.014381
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 111014381
-
-
Jones, A.R.1
Eisenacher, M.2
Mayer, G.3
Kohlbacher, O.4
Siepen, J.5
Hubbard, S.J.6
Selley, J.N.7
Searle, B.C.8
Shofstahl, J.9
Seymour, S.L.10
-
12
-
-
54949129419
-
ProteoWizard: Open source software for rapid proteomics tools development
-
Kessner, D.; Chambers, M.; Burke, R.; Agus, D.; Mallick, P. ProteoWizard: open source software for rapid proteomics tools development Bioinformatics 2008, 24, 2534-2536
-
(2008)
Bioinformatics
, vol.24
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
13
-
-
72149093828
-
Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry
-
Reiter, L.; Claassen, M.; Schrimpf, S. P.; Jovanovic, M.; Schmidt, A.; Buhmann, J. M.; Hengartner, M. O.; Aebersold, R. Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry Mol. Cell. Proteomics 2009, 8, 2405-2417
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2405-2417
-
-
Reiter, L.1
Claassen, M.2
Schrimpf, S.P.3
Jovanovic, M.4
Schmidt, A.5
Buhmann, J.M.6
Hengartner, M.O.7
Aebersold, R.8
|