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Volumn 2, Issue MAY, 2014, Pages

African relapsing fever borreliae genomospecies revealed by comparative genomics

Author keywords

Borrelia; Genomics; Phylogeny; Relapsing fever; Speciation

Indexed keywords


EID: 84930484504     PISSN: None     EISSN: 22962565     Source Type: Journal    
DOI: 10.3389/fpubh.2014.00043     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 84892598357 scopus 로고    scopus 로고
    • The epi- demiology and geographic distribution of relapsing fever borreliosis in West and North Africa, with a review of the Ornithodoros erraticus Complex (Acari: Ixodida)
    • Trape JF, Diatta G, Arnathau C, Bitam I, Sarih M, Belghyti D, et al. The epi- demiology and geographic distribution of relapsing fever borreliosis in West and North Africa, with a review of the Ornithodoros erraticus Complex (Acari: Ixodida). PLoS One (2013) 8:e78473. doi:10.1371/journal.pone.0078473
    • (2013) PLoS One , vol.8
    • Trape, J.F.1    Diatta, G.2    Arnathau, C.3    Bitam, I.4    Sarih, M.5    Belghyti, D.6
  • 2
    • 0142155215 scopus 로고    scopus 로고
    • A newly identi-?ed tick-borne Borrelia species and relapsing fever in Tanzania
    • Kisinza WN, McCall PJ, Mitani H, Talbert A, Fukunaga M. A newly identi-?ed tick-borne Borrelia species and relapsing fever in Tanzania. Lancet (2003) 362:1283-4. doi:10.1016/S0140-6736(03)14609-0
    • (2003) Lancet , vol.362 , pp. 1283-1284
    • Kisinza, W.N.1    McCall, P.J.2    Mitani, H.3    Talbert, A.4    Fukunaga, M.5
  • 5
    • 84998885585 scopus 로고    scopus 로고
    • Genome sequence of the relapsing fever borreliosis species Borrelia hispanica
    • Elbir H, Larsson P, UpretiM, Normark J, Bergström S. Genome sequence of the relapsing fever borreliosis species Borrelia hispanica. Genome Announc (2014) 2:e01171-13. doi:10.1128/genomeA.01171-13
    • (2014) Genome Announc , vol.2
    • Elbir, H.1    Larsson, P.2    Upreti, M.3    Normark, J.4    Bergström, S.5
  • 6
    • 52949138281 scopus 로고    scopus 로고
    • The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii
    • Lescot M, Audic S, Robert C, Nguyen TT, Blanc G, Cutler SJ, et al. The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet (2008) 4:e1000185. doi:10.1371/journal.pgen.1000185
    • (2008) PLoS Genet , vol.4
    • Lescot, M.1    Audic, S.2    Robert, C.3    Nguyen, T.T.4    Blanc, G.5    Cutler, S.J.6
  • 7
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh K, Asimenos G, Toh H. Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol (2009) 537:39-64. doi:10.1007/978-1-59745- 251-9_3
    • (2009) Methods Mol Biol , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 8
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 19:1572-4. doi:10.1093/bioinformatics/btg180
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 9
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: mol- ecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: mol- ecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 28:2731-9. doi:10.1093/molbev/msr121
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 11
    • 84892598357 scopus 로고    scopus 로고
    • The epi- demiology and geographic distribution of relapsing fever borreliosis in West and North Africa, with a review of the Ornithodoros erraticus Complex (Acari: Ixodida)
    • Trape JF, Diatta G, Arnathau C, Bitam I, Sarih M, Belghyti D, et al. The epi- demiology and geographic distribution of relapsing fever borreliosis in West and North Africa, with a review of the Ornithodoros erraticus Complex (Acari: Ixodida). PLoS One (2013) 8:e78473. doi:10.1371/journal.pone.0078473
    • (2013) PLoS One , vol.8
    • Trape, J.F.1    Diatta, G.2    Arnathau, C.3    Bitam, I.4    Sarih, M.5    Belghyti, D.6
  • 12
    • 0142155215 scopus 로고    scopus 로고
    • A newly identi- ?ed tick-borne Borrelia species and relapsing fever in Tanzania
    • Kisinza WN, McCall PJ, Mitani H, Talbert A, Fukunaga M. A newly identi- ?ed tick-borne Borrelia species and relapsing fever in Tanzania. Lancet (2003) 362:1283-4. doi:10.1016/S0140-6736(03)14609-0
    • (2003) Lancet , vol.362 , pp. 1283-1284
    • Kisinza, W.N.1    McCall, P.J.2    Mitani, H.3    Talbert, A.4    Fukunaga, M.5
  • 15
    • 84998885585 scopus 로고    scopus 로고
    • Genome sequence of the relapsing fever borreliosis species Borrelia hispanica
    • Elbir H, Larsson P, UpretiM, Normark J, Bergström S. Genome sequence of the relapsing fever borreliosis species Borrelia hispanica. Genome Announc (2014) 2:e01171-13. doi:10.1128/genomeA.01171-13
    • (2014) Genome Announc , vol.2
    • Elbir, H.1    Larsson, P.2    Upreti, M.3    Normark, J.4    Bergström, S.5
  • 16
    • 52949138281 scopus 로고    scopus 로고
    • The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii
    • Lescot M, Audic S, Robert C, Nguyen TT, Blanc G, Cutler SJ, et al. The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet (2008) 4:e1000185. doi:10.1371/journal.pgen.1000185
    • (2008) PLoS Genet , vol.4
    • Lescot, M.1    Audic, S.2    Robert, C.3    Nguyen, T.T.4    Blanc, G.5    Cutler, S.J.6
  • 17
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh K, Asimenos G, Toh H. Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol (2009) 537:39-64. doi:10.1007/978-1-59745- 251-9_3
    • (2009) Methods Mol Biol , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 18
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 19:1572-4. doi:10.1093/bioinformatics/ btg180
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 19
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: mol- ecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: mol- ecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 28:2731-9. doi:10.1093/molbev/msr121
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 20
    • 78149256307 scopus 로고    scopus 로고
    • BUCKy: gene tree/species tree recon-ciliation with Bayesian concordance analysis
    • Larget BR, Kotha SK, Dewey CN, Ané C. BUCKy: gene tree/species tree recon-ciliation with Bayesian concordance analysis. Bioinformatics (2010) 26:2910-1. doi:10.1093/bioinformatics/btq539
    • (2010) Bioinformatics , vol.26 , pp. 2910-2911
    • Larget, B.R.1    Kotha, S.K.2    Dewey, C.N.3    Ané, C.4
  • 21
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • SuyamaM,TorrentsD,Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res (2006) 34:W609-12. doi:10.1093/nar/gkl315
    • (2006) Nucleic Acids Res , vol.34 , pp. W609-W612
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 22
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol (2007) 24:1586-91. doi:10.1093/molbev/msm088
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 23
    • 84870667907 scopus 로고    scopus 로고
    • Genome sequence of the bacteriumStreptomyces davawensis JCM4913 and het- erologous production of the unique antibiotic roseo?avin
    • Jankowitsch F, Schwarz J, Rückert C, Gust B, Szczepanowski R, Blom J, et al. Genome sequence of the bacteriumStreptomyces davawensis JCM4913 and het- erologous production of the unique antibiotic roseo?avin. J Bacteriol (2012) 194:6818-27. doi:10.1128/JB.01592-12
    • (2012) J Bacteriol , vol.194 , pp. 6818-6827
    • Jankowitsch, F.1    Schwarz, J.2    Rückert, C.3    Gust, B.4    Szczepanowski, R.5    Blom, J.6
  • 24
    • 0035861511 scopus 로고    scopus 로고
    • Genome sequence of the plant pathogen and biotechnology agentAgrobacterium tumefaciens C58
    • Goodner B, Hinkle G, Gattung S, Miller N, Blanchard M, Qurollo B, et al. Genome sequence of the plant pathogen and biotechnology agentAgrobacterium tumefaciens C58. Science (2001) 294:2323-8. doi:10.1126/science.1066803
    • (2001) Science , vol.294 , pp. 2323-2328
    • Goodner, B.1    Hinkle, G.2    Gattung, S.3    Miller, N.4    Blanchard, M.5    Qurollo, B.6
  • 25
    • 0023663587 scopus 로고
    • Linear plasmids of the bacterium Borrelia burgdorferi have covalently closed ends
    • Barbour AG, Garon CF. Linear plasmids of the bacterium Borrelia burgdorferi have covalently closed ends. Science (1987) 237:409-11. doi:10.1126/science.3603026
    • (1987) Science , vol.237 , pp. 409-411
    • Barbour, A.G.1    Garon, C.F.2
  • 28
    • 58149183697 scopus 로고    scopus 로고
    • ARDB - antibiotic resistance genes database
    • Liu B, Pop M. ARDB - antibiotic resistance genes database. Nucleic Acids Res (2009) 37:D443-7. doi:10.1093/nar/gkn656
    • (2009) Nucleic Acids Res , vol.37 , pp. D443-D447
    • Liu, B.1    Pop, M.2
  • 29
    • 0020634962 scopus 로고
    • Antibiotic treatment of louse-borne relapsing fever in Ethiopia: a report of 377 cases
    • Perine PL, Teklu B. Antibiotic treatment of louse-borne relapsing fever in Ethiopia: a report of 377 cases. Am J Trop Med Hyg (1983) 32:1096-100.
    • (1983) Am J Trop Med Hyg , vol.32 , pp. 1096-1100
    • Perine, P.L.1    Teklu, B.2
  • 30
    • 0030633568 scopus 로고    scopus 로고
    • RecA protein: structure, function, and role in recom- binational DNA repair
    • Roca AI, Cox MM. RecA protein: structure, function, and role in recom- binational DNA repair. Prog Nucleic Acid Res Mol Biol (1997) 56:129-223. doi:10.1016/S0079-6603(08)61005-3
    • (1997) Prog Nucleic Acid Res Mol Biol , vol.56 , pp. 129-223
    • Roca, A.I.1    Cox, M.M.2
  • 31
    • 3042517502 scopus 로고    scopus 로고
    • Telomere exchange between linear replicons of Borrelia burgdorferi
    • HuangWM, Robertson M,Aron J, Casjens S. Telomere exchange between linear replicons of Borrelia burgdorferi. J Bacteriol (2004) 186:4134-41. doi:10.1128/ JB.186.13.4134-4141.2004
    • (2004) J Bacteriol , vol.186 , pp. 4134-4141
    • Huang, W.M.1    Robertson, M.2    Aron, J.3    Casjens, S.4
  • 32
    • 77954453774 scopus 로고    scopus 로고
    • Population structure of East African relapsing fever Borrelia spp
    • Cutler SJ, Bonilla EM, Singh RJ. Population structure of East African relapsing fever Borrelia spp. Emerg Infect Dis (2010) 16:1076-80. doi:10.3201/eid1607.091085
    • (2010) Emerg Infect Dis , vol.16 , pp. 1076-1080
    • Cutler, S.J.1    Bonilla, E.M.2    Singh, R.J.3
  • 33
    • 84893456850 scopus 로고    scopus 로고
    • A polyphasic strategy incorporating genomic data for the taxonomic description of new bacterial species
    • Ramasamy D, Mishra AK, Lagier J-C, Padhmanabhan R, Rossi M, Sentausa E, et al. A polyphasic strategy incorporating genomic data for the taxonomic description of new bacterial species. Int J Syst Evol Microbiol (2014) 64:384-91. doi:10.1099/ijs.0.057091-0
    • (2014) Int J Syst Evol Microbiol , vol.64 , pp. 384-391
    • Ramasamy, D.1    Mishra, A.K.2    Lagier, J-C.3    Padhmanabhan, R.4    Rossi, M.5    Sentausa, E.6
  • 34
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species de?nition for prokaryotes
    • Konstantinidis KT, Tiedje JM. Genomic insights that advance the species de?nition for prokaryotes. Proc Natl Acad Sci U S A. (2005) 102:2567-72. doi:10.1073/pnas.0409727102
    • (2005) Proc Natl Acad Sci U S A. , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.