What do we know about viruses in terrestrial antarctica?

Antarctic Terrestrial Microbiology: Physical and Biological Properties of Antarctic Soils

Volumn 9783642452130, Issue , 2014, Pages 79-90

  Hopkins, D W ^a   Swanson, M M ^b   Taliansky, M E ^b  

^a HERIOT WATT UNIVERSITY   (United Kingdom)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84930395286     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-45213-0_5     Document Type: Chapter

References (71)

1. Abraham S, Somers MJ, Chown SL. (2011). Seasonal, altitudinal and host plant-related variation in the abundance of aphids (Insecta, Hemiptera) on sub-Antarctic Marion Island. Polar Biol 34:513-520
2. Ackermann HW. (2005). Bacteriophage classification. Bacteriophage: Biol Appl, pp 67-89
3. Adams BJ, Bardgett RD, Ayres E, Wall DH, Aislabie J, Bamforth S, Bargagli R, Cary C, Cavacini P, Connell L, Convey P, Fell JW, Frati F, Hogg ID, Newsham KK, O'Donnell A, Russell N, Seppelt RD, Stevens MI. (2006). Diversity and distribution of Victoria Land biota. Soil Biol Biochem 38:3003-3018
4. Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F. (2006). The marine viromes of four oceanic regions. PLoS Biol 4:2121-2131
5. Bale JS, Block W, Worland MR. (2000). Thermal tolerance and acclimation response of larvae of the sub-Antarctic beetle Hydromedion sparsutum (Coleoptera: Perimylopidae). Polar Biol 23:77-84
6. Barbosa A, Jose Palacios M. (2009). Health of Antarctic birds: a review of their parasites, pathogens and diseases. Polar Biol 32:1095-1115
7. Barrett JE, Virginia RA, Hopkins DW, Aislabie J, Bargagli R, Bockheim JG, Campbell IB, Lyons WB, Moorhead DL, Nkem JN, Sletten RS, Steltzer H, Wall DH, Wallenstein MD. (2006). Terrestrial ecosystem processes of Victoria Land, Antarctica. Soil Biol Biochem 38:3019-3034
8. Bengtson JL, Boveng P, Franzen U, Have P, Heidejorgensen MP, Harkonen TJ. (1991). Antibodies to canine-distemper virus in Antarctic seals. Marine Mammal Sci 7:85-87
9. Breitbart M, Rohwer F. (2005). Here a virus, there a virus, everywhere the same virus?. Trends Microbiol 13:278-284
10. Briggs LC, Ashton RM, Metcalf P. (2003). Development of a highly sensitive screen for influenza A in guano and its application in the search for ancient RNA preserved under Antarctic Adelie penguin colonies. Avian Dis 47:1200-1202
11. Casas V, Rohwer F. (2007). Phage metagenomics. Adv Bacterial Genet: Use Transposons Phage Genomic Engineering pp 259-268
12. Chang CM, Lebarbenchon C, Gauthier-Clerc M, Le Bohec C, Beaune D, Le Maho Y, van Der Werf S. (2009). Molecular surveillance for avian influenza A virus in king penguins (Aptenodytes patagonicus). Polar Biol 32:663-665
13. Cowan DA, Chown SL, Convey P, Tuffin M, Hughes K, Pointing S, Vincent WF. (2011). Nonindigenous microorganisms in the Antarctic: assessing the risks. Trends Microbiol 19:540-548
14. Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F. (2008). Functional metagenomic profiling of nine biomes. Nature 452:629-632
15. Edwards RA, Rohwer F. (2005). Viral metagenomics. Nat Rev Microbiol 3:504-510
16. Elberling B, Gregorich EG, Hopkins DW, Sparrow AD, Novis P, Greenfield LG. (2006). Distribution and dynamics of soil organic matter in an Antarctic dry valley. Soil Biol Biochem 38:3095-3106
17. Fauquet CM, Sawyer S, Idris AM, Brown JK. (2005). Sequence analysis and classification of apparent recombinant begomoviruses infecting tomato in the Nile and Mediterranean basins. Phytopathology 95:549-555
18. Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB. (2007). Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol 73:7059-7066
19. Gauthier-Clerc M, Eterradossi N, Toquin D, Guittet M, Kuntz G, Le Maho Y. (2002). Serological survey of the king penguin, Aptenodytes patagonicus in Crozet Archipelago for antibodies to infectious bursal disease, influenza A and Newcastle disease viruses. Polar Biol 25:316-319
20. Green TGA, Sancho LG, Tuerk R, Seppelt RD, Hogg ID. (2011). High diversity of lichens at 84S, Queen Maud Mountains, suggests preglacial survival of species in the Ross Sea region, Antarctica. Polar Biol 34:1211-1220
21. Grimaldi W, Jabour J, Woehler EJ. (2011). Considerations for minimising the spread of infectious disease in Antarctic seabirds and seals. Polar Rec 47:56-66
22. Harder TC, Plotz J, Liess B. (1991). Antibodies against European phocine herpesvirus isolates detected in sera of antarctic seals. Polar Biol 11:509-512
23. Harmata K, Olech M. (1991). Transect for aerobiological studies from Antarctica to Poland. Grana 30:458-463
24. Hogg ID, Cary SC, Convey P, Newsham KK, O'Donnell AG, Adams BJ, Aislabie J, Frati F, Stevens MI, Wall DH. (2006). Biotic interactions in Antarctic terrestrial ecosystems: are they a factor?. Soil Biol Biochem 38:3035-3040
25. Hopkins DW, Sparrow AD, Novis PM, Gregorich EG, Elberling B, Greenfield LG. (2006a). Controls on the distribution of productivity and organic resources in Antarctic Dry Valley soils. Proc Royal Soc Biol Sci 273:2687-2695
26. Hopkins DW, Sparrow AD, Elberling B, Gregorich EG, Novis PM, Greenfield LG, Tilston EL. (2006b). Carbon, nitrogen and temperature controls on microbial activity in soils from an Antarctic dry valley. Soil Biol Biochem 38:3130-3140
27. Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour C, Dennis PG, Meier-Augenstein W, Greenfield LG. (2009). Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environ Microbiol 11:597-608
28. Hopkins DW, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG. (2008). Redistributed lacustrine detritus as a spatial subsidy of biological resources for soils in an Antarctic dry valley. Geoderma 144:86-92
29. Hulle M, Pannetier D, Simon JC, Vernon P, Frenot Y. (2003). Aphids of sub-Antarctic Iles Crozet and Kerguelen: species diversity, host range and spatial distribution. Antarct Sci 15:203-209
30. Kepner RL, Wharton RA, Suttle CA. (1998). Viruses in Antarctic lakes. Limnol Oceanogr 43:1754-1761
31. Kerry KR, Riddle MJ. (2009). Health Antarctic wildlife. Challenge Sci Policy, 470
32. King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ. (2011). Ninth Report of the International Committee on Taxonomy of Viruses, 1338
33. Kristensen DM, Mushegian AR, Dolja VV, Koonin EV. (2010). New dimensions of the virus world discovered through metagenomics. Trends Microbiol 18:11-19
34. La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D. (2008). The virophage as a unique parasite of the giant mimivirus. Nat 455:100-104
35. Laybourn-Parry J, Hofer JS, Sommaruga R. (2001). Viruses in the plankton of freshwater and saline Antarctic lakes. Freshwater Biol 46:1279-1287
36. Laybourn-Parry J, Marshall WA, Madan NJ. (2007). Viral dynamics and patterns of lysogeny in saline Antarctic lakes. Polar Biol 30:351-358
37. Laybourn-Parry J, Quayle W, Henshaw T. (2002). The biology and evolution of Antarctic saline lakes in relation to salinity and trophy. Polar Biol 25:542-552
38. Laybourn-Parry J, Bayliss P. (1996). Seasonal dynamics of the planktonic community in Lake Druzhby, Princess Elizabeth Land, Eastern Antarctica. Freshwater Biol 35:57-67
39. Marshall WA. (1996). Biological particles over Antarctica. Nature 383:680
40. Marshall WA. (1998). Aerial transport of keratinaceous substrate and distribution of the fungus Geomyces pannorum in Antarctic soils. Microbial Ecol 36:212-219
41. Miller GD, Watts JM, Shellam GR. (2008). Viral antibodies in south polar skuas around Davis Station, Antarctica. Antarct Sci 20:455-461
42. Miller PJ, Afonso CL, Spackman E, Scott MA, Pedersen JC, Senne DA, Brown JD, Fuller CM, Uhart MM, Karesh WB, Brown IH, Alexander DJ, Swayne DE. (2010). Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands. J Virol 84:11496-11504
43. Moorhead DL, Barrett JE, Virginia RA, Wall DH, Porazinska D. (2003). Organic matter and soil biota of upland wetlands in Taylor Valley, Antarctica. Polar Biol 26:567-576
44. Morgan IR, Westbury HA, Caple IW, Campbell J. (1981). A survey of virus-infection in subantarctic penguins on Macquarie Island, southern-ocean. Aust Vet J 57:333-335
45. Morris CE, Sands DC, Bardin M, Jaenicke R, Vogel B, Leyronas C, Ariya PA, Psenner R. (2011). Microbiology and atmospheric processes: research challenges concerning the impact of airborne micro-organisms on the atmosphere and climate. Biogeosciences 8:17-25
46. Nelson AE, Smellie JL, Williams M, Moreton S. (2008). Age, geographical distribution and taphonomy of an unusual occurrence of mummified crabeater seals on James Ross Island, Antarctic Peninsula. Antarct Sci 20:485-493
47. Novis PM, Smissen RD. (2006). Two genetic and ecological groups of Nostoc commune in Victoria Land, Antarctica, revealed by AFLP analysis. Antarct Sci 18:573-581
48. Parker BC, Simmons GM, Wharton RA, Seaburg KG, Love FG. (1982). Removal of organic and inorganic matter from antarctic lakes by aerial escape of bluegreen algal mats. J Phycol 18:72-78
49. Parnikoza IY, Miryuta NY, Maidanyuk DN, Loparev SA, Korsun SG, Budzanivska IG, Shevchenko TP, Polischuk VP, Kunakh VA, Kozeretska IA. (2007). Habitat and leaf cytogenetic characteristics of Deschampsia antarctica Desv. in the Maritime Antarctica. Polar Sci 1:121-128
50. Pearce DA, Bridge PD, Hughes KA, Sattler B, Psenner R, Russell NJ. (2009). Microorganisms in the atmosphere over Antarctica. FEMS Microbiol Ecol 69:143-157
51. Pearce DA, Hughes KA, Lachlan-Cope T, Harangozo SA, Jones AE. (2010). Biodiversity of airborne microorganisms at Halley station, Antarctica. Extremophiles 14:145-159
52. Pearce DA, Laybourn-Parry J. (2012). Antarctic lakes as models for the study of microbial biodiversity, biogeography and evolution. Antarct Ecosyst: Extreme Environ Changing World, pp 63-89
53. Pearce DA, Wilson WH. (2003). Viruses in Antarctic ecosystems. Antarct Sci 15:319-331
54. Polischuk V, Budzanivska I, Shevchenko T, Oliynik S. (2007). Evidence for plant viruses in the region of Argentina Islands, Antarctica. FEMS Microbiol Ecol 59:409-417
55. Säwström C, Anesio MA, Graneli W, Laybourn-Parry J. (2007a). Seasonal viral loop dynamics in two large ultraoligotrophic Antarctic freshwater lakes. Microbial Ecol 53:1-11
56. Säwström C, Graneli W, Laybourn-Parry J, Anesio AM. (2007b). High viral infection rates in Antarctic and Arctic bacterioplankton. Environ Microbiol 9:250-255
57. Säwström C, Lisle J, Anesio AM, Priscu JC, Laybourn-Parry J. (2008). Bacteriophage in polar inland waters. Extremophiles 12:167-175
58. Skotnicki ML, Selkirk PM, Kitajima E, McBride TP, Shaw J, Mackenzie A. (2003). The first subantarctic plant virus report: Stilbocarpa mosaic bacilliform badnavirus (SMBV) from Macquarie Island. Polar Biol 26:1-7
59. Srinivasiah S, Bhavsar J, Thapar K, Liles M, Schoenfeld T, Wommack KE. (2008). Phages across the biosphere: contrasts of viruses in soil and aquatic environments. Res Microbiol 159:349-357
60. Suttle CA. (2005). Viruses in the sea. Nature 437:356-361
61. Suttle CA. (2007). Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5:801-812
62. Swanson MM, Reavy B, Makarova KS, Cock PJ, Hopkins DW, Torrance L, Koonin EV, Taliansky M. (2012). Novel bacteriophages containing a genome of another bacteriophage within their genomes. http://www.plosone.org/article/info:doi/10.1371/journal.pone.0040683
63. Thomazelli LM, Araujo J, Oliveira DB, Sanfilippo L, Ferreira CS, Brentano L, Pelizari VH, Nakayama C, Duarte R, Hurtado R, Branco JO, Walker D, Durigon EL. (2010). Newcastle disease virus in penguins from King George Island on the Antarctic region. Vet Microbiol 146:155-160
64. Todd CM. (1996). Body size, prey size and herbivory in coleoptera from the sub-Antarctic island of South Georgia. Pedobiologia 40:557-569
65. Tryland M, Nymo IH, Nielsen O, Nordoy ES, Kovacs KM, Krafft BA, Thoresen SI, Asbakk K, Osterrieder K, Roth SJ, Lydersen C, Godfroid J, Blix AS. (2012). Serum chemistry and antibodies against pathogens in antarctic fur seals, weddell seals, crabeater seals, and ross seals. J Wildl Dis 48:632-645
66. Wallensten A, Munster VJ, Osterhaus ADME, Waldenstrom J, Bonnedahl J, Broman T, Fouchier RAM, Olsen B. (2006). Mounting evidence for the presence of influenza A virus in the avifauna of the Antarctic region. Antarct Sci 18:353-356
67. Williamson KE, Radosevich M, Smith DW, Wommack KE. (2007). Incidence of lysogeny within temperate and extreme soil environments. Environ Microbiol 9:2563-2574
68. Williamson KE, Radosevich M, Wommack KE. (2005). Abundance and diversity of viruses in six Delaware soils. Appl Environ Microbiol 71:3119-3125
69. Wilson WH, Lane D, Pearce DA, Ellis-Evans JC. (2000). Transmission electron microscope analysis of virus-like particles in the freshwater lakes of Signy Island, Antarctica. Polar Biol 23:657-660
70. Wommack KE. (2010). Viral ecology: old question, new challenges. Microbiol Today, pp 96-99
71. Yau S, Lauro FM, DeMaere MZ, Brown MV, Thomas T, Raftery MJ, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Gibson JA, Cavicchioli R. (2011). Virophage control of antarctic algal host-virus dynamics. Proc National Acad Sci United States Am 108:6163-6168