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Volumn 58, Issue , 2015, Pages 59-66

Epigenome profiling reveals significant DNA demethylation of interferon signature genes in lupus neutrophils

Author keywords

Epigenetics; LDG; Lupus; Methylome; Neutrophils

Indexed keywords

AZATHIOPRINE; BISULFITE; HYDROXYCHLOROQUINE; MEPACRINE; MYCOPHENOLIC ACID; PREDNISONE; RITUXIMAB; TOLL LIKE RECEPTOR 9; CHROMATIN; INTERFERON;

EID: 84930379392     PISSN: 08968411     EISSN: 10959157     Source Type: Journal    
DOI: 10.1016/j.jaut.2015.01.004     Document Type: Article
Times cited : (145)

References (28)
  • 1
    • 84881301739 scopus 로고    scopus 로고
    • Genetics and epigenetics of systemic lupus erythematosus
    • Costa-Reis P., Sullivan K.E. Genetics and epigenetics of systemic lupus erythematosus. Curr Rheumatol Rep 2013, 15:369.
    • (2013) Curr Rheumatol Rep , vol.15 , pp. 369
    • Costa-Reis, P.1    Sullivan, K.E.2
  • 2
    • 84902203558 scopus 로고    scopus 로고
    • Type I interferon in the pathogenesis of lupus
    • Crow M.K. Type I interferon in the pathogenesis of lupus. JImmunol 2014, 192:5459-5468.
    • (2014) JImmunol , vol.192 , pp. 5459-5468
    • Crow, M.K.1
  • 3
    • 0037451167 scopus 로고    scopus 로고
    • Interferon and granulopoiesis signatures in systemic lupus erythematosus blood
    • Bennett L., Palucka A.K., Arce E., Cantrell V., Borvak J., Banchereau J., et al. Interferon and granulopoiesis signatures in systemic lupus erythematosus blood. JExp Med 2003, 197:711-723.
    • (2003) JExp Med , vol.197 , pp. 711-723
    • Bennett, L.1    Palucka, A.K.2    Arce, E.3    Cantrell, V.4    Borvak, J.5    Banchereau, J.6
  • 4
    • 77951935256 scopus 로고    scopus 로고
    • Adistinct subset of proinflammatory neutrophils isolated from patients with systemic lupus erythematosus induces vascular damage and synthesizes type I IFNs
    • Denny M.F., Yalavarthi S., Zhao W., Thacker S.G., Anderson M., Sandy A.R., et al. Adistinct subset of proinflammatory neutrophils isolated from patients with systemic lupus erythematosus induces vascular damage and synthesizes type I IFNs. JImmunol 2010, 184:3284-3297.
    • (2010) JImmunol , vol.184 , pp. 3284-3297
    • Denny, M.F.1    Yalavarthi, S.2    Zhao, W.3    Thacker, S.G.4    Anderson, M.5    Sandy, A.R.6
  • 5
    • 79960392810 scopus 로고    scopus 로고
    • Netting neutrophils induce endothelial damage, infiltrate tissues, and expose immunostimulatory molecules in systemic lupus erythematosus
    • Villanueva E., Yalavarthi S., Berthier C.C., Hodgin J.B., Khandpur R., Lin A.M., et al. Netting neutrophils induce endothelial damage, infiltrate tissues, and expose immunostimulatory molecules in systemic lupus erythematosus. JImmunol 2011, 187:538-552.
    • (2011) JImmunol , vol.187 , pp. 538-552
    • Villanueva, E.1    Yalavarthi, S.2    Berthier, C.C.3    Hodgin, J.B.4    Khandpur, R.5    Lin, A.M.6
  • 6
    • 84864881063 scopus 로고    scopus 로고
    • Lupus neutrophils: 'NET' gain in understanding lupus pathogenesis
    • Knight J.S., Kaplan M.J. Lupus neutrophils: 'NET' gain in understanding lupus pathogenesis. Curr Opin Rheumatol 2012, 24:441-450.
    • (2012) Curr Opin Rheumatol , vol.24 , pp. 441-450
    • Knight, J.S.1    Kaplan, M.J.2
  • 7
    • 84878361920 scopus 로고    scopus 로고
    • Genome-wide DNA methylation study suggests epigenetic accessibility and transcriptional poising of interferon-regulated genes in naive CD4+ T cells from lupus patients
    • Coit P., Jeffries M., Altorok N., Dozmorov M.G., Koelsch K.A., Wren J.D., et al. Genome-wide DNA methylation study suggests epigenetic accessibility and transcriptional poising of interferon-regulated genes in naive CD4+ T cells from lupus patients. JAutoimmun 2013, 43:78-84.
    • (2013) JAutoimmun , vol.43 , pp. 78-84
    • Coit, P.1    Jeffries, M.2    Altorok, N.3    Dozmorov, M.G.4    Koelsch, K.A.5    Wren, J.D.6
  • 8
    • 84901639727 scopus 로고    scopus 로고
    • Epigenome-wide scan identifies a treatment-responsive pattern of altered DNA methylation among cytoskeletal remodeling genes in monocytes and CD4+ T cells in Behcet's disease
    • Hughes T., Ture-Ozdemir F., Alibaz-Oner F., Coit P., Direskeneli H., Sawalha A.H. Epigenome-wide scan identifies a treatment-responsive pattern of altered DNA methylation among cytoskeletal remodeling genes in monocytes and CD4+ T cells in Behcet's disease. Arthritis Rheum 2014, 66:1648-1658.
    • (2014) Arthritis Rheum , vol.66 , pp. 1648-1658
    • Hughes, T.1    Ture-Ozdemir, F.2    Alibaz-Oner, F.3    Coit, P.4    Direskeneli, H.5    Sawalha, A.H.6
  • 9
    • 84896266991 scopus 로고    scopus 로고
    • Genome-wide DNA methylation patterns in naive CD4+ T cells from patients with primary sjogren's syndrome
    • Altorok N., Coit P., Hughes T., Koelsch K.A., Stone D.U., Rasmussen A., et al. Genome-wide DNA methylation patterns in naive CD4+ T cells from patients with primary sjogren's syndrome. Arthritis Rheum 2014, 66:731-739.
    • (2014) Arthritis Rheum , vol.66 , pp. 731-739
    • Altorok, N.1    Coit, P.2    Hughes, T.3    Koelsch, K.A.4    Stone, D.U.5    Rasmussen, A.6
  • 10
    • 84940368260 scopus 로고    scopus 로고
    • Genome-wide DNA methylation analysis in dermal fibroblasts from patients with diffuse and limited systemic sclerosis reveals common and subset-specific DNA methylation aberrancies
    • annrheumdis-2014-205303
    • Altorok N., Tsou P.S., Coit P., Khanna D., Sawalha A.H. Genome-wide DNA methylation analysis in dermal fibroblasts from patients with diffuse and limited systemic sclerosis reveals common and subset-specific DNA methylation aberrancies. Ann Rheum Dis 2014 May 8, pii: annrheumdis-2014-205303. 10.1136/annrheumdis-2014-205303.
    • (2014) Ann Rheum Dis
    • Altorok, N.1    Tsou, P.S.2    Coit, P.3    Khanna, D.4    Sawalha, A.H.5
  • 11
    • 84908381697 scopus 로고    scopus 로고
    • Genome-wide DNA methylation study identifies significant epigenomic changes in osteoarthritic cartilage
    • Jeffries M.A., Donica M., Baker L., Stevenson M., Annan A.C., Humphrey M.B., et al. Genome-wide DNA methylation study identifies significant epigenomic changes in osteoarthritic cartilage. Arthritis Rheum 2014, 66:2804-2815.
    • (2014) Arthritis Rheum , vol.66 , pp. 2804-2815
    • Jeffries, M.A.1    Donica, M.2    Baker, L.3    Stevenson, M.4    Annan, A.C.5    Humphrey, M.B.6
  • 12
    • 1042269463 scopus 로고    scopus 로고
    • Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network
    • Wren J.D., Garner H.R. Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network. Bioinformatics 2004, 20:191-198.
    • (2004) Bioinformatics , vol.20 , pp. 191-198
    • Wren, J.D.1    Garner, H.R.2
  • 13
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Da Wei Huang B.T.S., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2008, 4:44-57.
    • (2008) Nat Protoc , vol.4 , pp. 44-57
    • Da Wei Huang, B.T.S.1    Lempicki, R.A.2
  • 14
    • 67649205713 scopus 로고    scopus 로고
    • Aglobal meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide
    • Wren J.D. Aglobal meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. Bioinformatics 2009, 25:1694-1701.
    • (2009) Bioinformatics , vol.25 , pp. 1694-1701
    • Wren, J.D.1
  • 15
    • 84885395758 scopus 로고    scopus 로고
    • Nucleic acid sensors and type I interferon production in systemic lupus erythematosus
    • Shrivastav M., Niewold T.B. Nucleic acid sensors and type I interferon production in systemic lupus erythematosus. Front Immunol 2013, 4:319.
    • (2013) Front Immunol , vol.4 , pp. 319
    • Shrivastav, M.1    Niewold, T.B.2
  • 16
    • 84905961531 scopus 로고    scopus 로고
    • The inflammasome and lupus: another innate immune mechanism contributing to disease pathogenesis?
    • Kahlenberg J.M., Kaplan M.J. The inflammasome and lupus: another innate immune mechanism contributing to disease pathogenesis?. Curr Opin Rheumatol 2014, 26:475-481.
    • (2014) Curr Opin Rheumatol , vol.26 , pp. 475-481
    • Kahlenberg, J.M.1    Kaplan, M.J.2
  • 17
    • 44849085476 scopus 로고    scopus 로고
    • The innate immune system in SLE: type I interferons and dendritic cells
    • Ronnblom L., Pascual V. The innate immune system in SLE: type I interferons and dendritic cells. Lupus 2008, 17:394-399.
    • (2008) Lupus , vol.17 , pp. 394-399
    • Ronnblom, L.1    Pascual, V.2
  • 18
    • 10444248118 scopus 로고    scopus 로고
    • Coordinate overexpression of interferon-alpha-induced genes in systemic lupus erythematosus
    • Kirou K.A., Lee C., George S., Louca K., Papagiannis I.G., Peterson M.G., et al. Coordinate overexpression of interferon-alpha-induced genes in systemic lupus erythematosus. Arthritis Rheum 2004, 50:3958-3967.
    • (2004) Arthritis Rheum , vol.50 , pp. 3958-3967
    • Kirou, K.A.1    Lee, C.2    George, S.3    Louca, K.4    Papagiannis, I.G.5    Peterson, M.G.6
  • 19
    • 77649340053 scopus 로고    scopus 로고
    • Global H4 acetylation analysis by ChIP-chip in systemic lupus erythematosus monocytes
    • Zhang Z., Song L., Maurer K., Petri M.A., Sullivan K.E. Global H4 acetylation analysis by ChIP-chip in systemic lupus erythematosus monocytes. Genes Immun 2010, 11:124-133.
    • (2010) Genes Immun , vol.11 , pp. 124-133
    • Zhang, Z.1    Song, L.2    Maurer, K.3    Petri, M.A.4    Sullivan, K.E.5
  • 20
    • 84893397971 scopus 로고    scopus 로고
    • Neutrophil-mediated IFN activation in the bone marrow alters B cell development in human and murine systemic lupus erythematosus
    • Palanichamy A., Bauer J.W., Yalavarthi S., Meednu N., Barnard J., Owen T., et al. Neutrophil-mediated IFN activation in the bone marrow alters B cell development in human and murine systemic lupus erythematosus. JImmunol 2014, 192:906-918.
    • (2014) JImmunol , vol.192 , pp. 906-918
    • Palanichamy, A.1    Bauer, J.W.2    Yalavarthi, S.3    Meednu, N.4    Barnard, J.5    Owen, T.6
  • 21
    • 84899579693 scopus 로고    scopus 로고
    • Types of DNA methylation status of the interspersed repetitive sequences for LINE-1, Alu, HERV-E and HERV-K in the neutrophils from systemic lupus erythematosus patients and healthy controls
    • Sukapan P., Promnarate P., Avihingsanon Y., Mutirangura A., Hirankarn N. Types of DNA methylation status of the interspersed repetitive sequences for LINE-1, Alu, HERV-E and HERV-K in the neutrophils from systemic lupus erythematosus patients and healthy controls. JHum Genet 2014, 59:178-188.
    • (2014) JHum Genet , vol.59 , pp. 178-188
    • Sukapan, P.1    Promnarate, P.2    Avihingsanon, Y.3    Mutirangura, A.4    Hirankarn, N.5
  • 22
    • 79952476762 scopus 로고    scopus 로고
    • Netting neutrophils are major inducers of type I IFN production in pediatric systemic lupus erythematosus
    • 73-20, PubMed PMID: 21389264. Pubmed Central PMCID: 3143837.17
    • Garcia-Romo G.S., Caielli S., Vega B., Connolly J., Allantaz F., Xu Z., et al. Netting neutrophils are major inducers of type I IFN production in pediatric systemic lupus erythematosus. Science translational medicine 2011 Mar 9, 3(73). 73-20. PubMed PMID: 21389264. Pubmed Central PMCID: 3143837.17.
    • (2011) Science translational medicine , vol.3 , Issue.73
    • Garcia-Romo, G.S.1    Caielli, S.2    Vega, B.3    Connolly, J.4    Allantaz, F.5    Xu, Z.6
  • 23
    • 79952468782 scopus 로고    scopus 로고
    • Neutrophils activate plasmacytoid dendritic cells by releasing self-DNA-peptide complexes in systemic lupus erythematosus
    • 73-19
    • Lande R., Ganguly D., Facchinetti V., Frasca L., Conrad C., Gregorio J., et al. Neutrophils activate plasmacytoid dendritic cells by releasing self-DNA-peptide complexes in systemic lupus erythematosus. Science translational medicine 2011 Mar 9, 3(73). 73-19.
    • (2011) Science translational medicine , vol.3 , Issue.73
    • Lande, R.1    Ganguly, D.2    Facchinetti, V.3    Frasca, L.4    Conrad, C.5    Gregorio, J.6
  • 25
    • 0038189486 scopus 로고    scopus 로고
    • Rac1 deletion in mouse neutrophils has selective effects on neutrophil functions
    • Glogauer M., Marchal C.C., Zhu F., Worku A., Clausen B.E., Foerster I., et al. Rac1 deletion in mouse neutrophils has selective effects on neutrophil functions. JImmunol 2003, 170:5652-5657.
    • (2003) JImmunol , vol.170 , pp. 5652-5657
    • Glogauer, M.1    Marchal, C.C.2    Zhu, F.3    Worku, A.4    Clausen, B.E.5    Foerster, I.6
  • 26
    • 80053351733 scopus 로고    scopus 로고
    • Rac2 is required for the formation of neutrophil extracellular traps
    • Lim M.B., Kuiper J.W., Katchky A., Goldberg H., Glogauer M. Rac2 is required for the formation of neutrophil extracellular traps. JLeukoc Biol 2011, 90:771-776.
    • (2011) JLeukoc Biol , vol.90 , pp. 771-776
    • Lim, M.B.1    Kuiper, J.W.2    Katchky, A.3    Goldberg, H.4    Glogauer, M.5
  • 28
    • 14744299030 scopus 로고    scopus 로고
    • Regulation of innate immunity by rho GTPases
    • Bokoch G.M. Regulation of innate immunity by rho GTPases. Trends Cell Biol 2005, 15:163-171.
    • (2005) Trends Cell Biol , vol.15 , pp. 163-171
    • Bokoch, G.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.