Type II toxin-antitoxin loci: Phylogeny

Prokaryotic Toxin-Antitoxins

Volumn , Issue , 2013, Pages 239-247

  Ou, Hong Yu ^a   Wei, Yiqing ^a   Bi, Dexi ^a  

^a Shanghai Jiao Tong University   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84930247635     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-33253-1_14     Document Type: Chapter

References (16)

1. Bi, D., Xu, Z., Harrison, E.M., Tai, C., Wei, Y., He, X., Jia, S., Deng, Z., Rajakumar, K., Ou, H.Y. (2012). ICEberg: A web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Research, 40(Database issue), D621-D626
2. Christensen-Dalsgaard, M., Jorgensen, M. G., & Gerdes, K. (2010). Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Molecular Microbiology, 75(2), 333-348
3. Gerdes, K., Christensen, S. K., & Lobner-Olesen, A. (2005). Prokaryotic toxin-antitoxin stress response loci. Nature Reviews Microbiology, 3(5), 371-382
4. Harrison, E. M., Carter, M. E., Luck, S., Ou, H. Y., He, X., Deng, Z., et al. (2010). Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14. Infection and Immunity, 78(4), 1437-1446
5. Jiang, Y., Pogliano, J., Helinski, D. R., & Konieczny, I. (2002). ParE toxin encoded by the broadhost-range plasmid RK2 is an inhibitor of Escherichia coli gyrase. Molecular Microbiology, 44(4), 971-979
6. Leplae, R., Geeraerts, D., Hallez, R., Guglielmini, J., Dreze, P., & Van Melderen, L. (2011). Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families. Nucleic Acids Research, 39(13), 5513-5525
7. Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2009). Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biol Direct, 4, 19
8. Miclea, P. S., Peter, M., Vegh, G., Cinege, G., Kiss, E., Varo, G., et al. (2010). Atypical transcriptional regulation and role of a new toxin-antitoxin-like module and its effect on the lipid composition of Bradyrhizobium japonicum. Molecular Plant-Microbe Interactions, 23(5), 638-650
9. Pandey, D. P., & Gerdes, K. (2005). Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Research, 33(3), 966-976
10. Ramage, H. R., Connolly, L. E., & Cox, J. S. (2009). Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: Implications for pathogenesis, stress responses, and evolution. PLoS Genetics, 5(12), e1000767
11. Schmidt, O., Schuenemann, V. J., Hand, N. J., Silhavy, T. J., Martin, J., Lupas, A. N., et al. (2007). prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. Journal of Molecular Biology, 372(4), 894-905
12. Sevin, E. W., & Barloy-Hubler, F. (2007). RASTA-Bacteria: A web-based tool for identifying toxin-antitoxin loci in prokaryotes. Genome Biology, 8(8), 155
13. Shao, Y., Harrison, E.M., Bi, D., Tai, C., He, X., Ou, H.Y., Rajakumar, K., Deng, Z. (2011). TADB: A web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea. Nucleic Acids Research, 39(Database issue), D606-D611
14. Van Melderen, L., & Saavedra De Bast, M. (2009). Bacterial toxin-antitoxin systems: More than selfish entities? PLoS Genetics, 5(3), e1000437
15. Wozniak, R. A., & Waldor, M. K. (2009). A toxin-antitoxin system promotes the maintenance of an integrative conjugative element. PLoS Genetics, 5(3), e1000439
16. Yuan, J., Yamaichi, Y., & Waldor, M. K. (2011). The three Vibrio cholerae chromosome IIencoded ParE toxins degrade chromosome I following loss of chromosome II. Journal of Bacteriology, 193(3), 611-619.