-
1
-
-
0029767015
-
Ancestral βγ-crystallin precursor structure in a yeast killer toxin
-
W. Antuch, P. Güntert, and K. Wüthrich Ancestral βγ-crystallin precursor structure in a yeast killer toxin Nat. Struct. Biol. 3 1996 662 665
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 662-665
-
-
Antuch, W.1
Güntert, P.2
Wüthrich, K.3
-
2
-
-
84862970421
-
Protein structure validation by generalized linear model root-mean-square deviation prediction
-
A. Bagaria, V. Jaravine, Y.P.J. Huang, G.T. Montelione, and P. Güntert Protein structure validation by generalized linear model root-mean-square deviation prediction Protein Sci. 21 2012 229 238
-
(2012)
Protein Sci.
, vol.21
, pp. 229-238
-
-
Bagaria, A.1
Jaravine, V.2
Huang, Y.P.J.3
Montelione, G.T.4
Güntert, P.5
-
3
-
-
84879098708
-
Estimating structure quality trends in the Protein Data Bank by equivalent resolution
-
A. Bagaria, V. Jaravine, and P. Güntert Estimating structure quality trends in the Protein Data Bank by equivalent resolution Comput. Biol. Chem. 46 2013 8 15
-
(2013)
Comput. Biol. Chem.
, vol.46
, pp. 8-15
-
-
Bagaria, A.1
Jaravine, V.2
Güntert, P.3
-
4
-
-
0025830469
-
A method to identify protein sequences that fold into a known 3-dimensional structure
-
J.U. Bowie, R. Lüthy, and D. Eisenberg A method to identify protein sequences that fold into a known 3-dimensional structure Science 253 1991 164 170
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Lüthy, R.2
Eisenberg, D.3
-
5
-
-
14144253010
-
Prion protein NMR structures of chickens, turtles, and frogs
-
L. Calzolai, D.A. Lysek, D.R. Perez, P. Güntert, and K. Wüthrich Prion protein NMR structures of chickens, turtles, and frogs Proc. Natl. Acad. Sci. U S A 102 2005 651 655
-
(2005)
Proc. Natl. Acad. Sci. U S A
, vol.102
, pp. 651-655
-
-
Calzolai, L.1
Lysek, D.A.2
Perez, D.R.3
Güntert, P.4
Wüthrich, K.5
-
6
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
V.B. Chen, W.B. Arendall, J.J. Headd, D.A. Keedy, R.M. Immormino, G.J. Kapral, L.W. Murray, J.S. Richardson, and D.C. Richardson MolProbity: all-atom structure validation for macromolecular crystallography Acta Crystallogr. D 66 2010 12 21
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
7
-
-
3242886389
-
MolProbity: Structure validation and all-atom contact analysis for nucleic acids and their complexes
-
I.W. Davis, L.W. Murray, J.S. Richardson, and D.C. Richardson MolProbity: structure validation and all-atom contact analysis for nucleic acids and their complexes Nucleic Acids Res. 32 2004 W615 W619
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W615-W619
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
8
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
I.W. Davis, A. Leaver-Fay, V.B. Chen, J.N. Block, G.J. Kapral, X. Wang, L.W. Murray, W.B. Arendall, J. Snoeyink, and J.S. Richardson MolProbity: all-atom contacts and structure validation for proteins and nucleic acids Nucleic Acids Res. 35 2007 W375 W383
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W375-W383
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall, W.B.8
Snoeyink, J.9
Richardson, J.S.10
-
9
-
-
0031714689
-
Structure calculation of biological macromolecules from NMR data
-
P. Güntert Structure calculation of biological macromolecules from NMR data Q. Rev. Biophys. 31 1998 145 237
-
(1998)
Q. Rev. Biophys.
, vol.31
, pp. 145-237
-
-
Güntert, P.1
-
10
-
-
58849162221
-
Automated structure determination from NMR spectra
-
P. Güntert Automated structure determination from NMR spectra Eur. Biophys. J. 38 2009 129 143
-
(2009)
Eur. Biophys. J.
, vol.38
, pp. 129-143
-
-
Güntert, P.1
-
11
-
-
0026089657
-
Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA
-
P. Güntert, W. Braun, and K. Wüthrich Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA J. Mol. Biol. 217 1991 517 530
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 517-530
-
-
Güntert, P.1
Braun, W.2
Wüthrich, K.3
-
12
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
P. Güntert, C. Mumenthaler, and K. Wüthrich Torsion angle dynamics for NMR structure calculation with the new program DYANA J. Mol. Biol. 273 1997 283 298
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
13
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
T. Herrmann, P. Güntert, and K. Wüthrich Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA J. Mol. Biol. 319 2002 209 227
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
15
-
-
0035807882
-
NMR structure reveals intramolecular regulation mechanism for pheromone binding and release
-
R. Horst, F. Damberger, P. Luginbühl, P. Güntert, G. Peng, L. Nikonova, W.S. Leal, and K. Wüthrich NMR structure reveals intramolecular regulation mechanism for pheromone binding and release Proc. Natl. Acad. Sci. U S A 98 2001 14374 14379
-
(2001)
Proc. Natl. Acad. Sci. U S A
, vol.98
, pp. 14374-14379
-
-
Horst, R.1
Damberger, F.2
Luginbühl, P.3
Güntert, P.4
Peng, G.5
Nikonova, L.6
Leal, W.S.7
Wüthrich, K.8
-
16
-
-
31944451135
-
A topology-constrained distance network algorithm for protein structure determination from NOESY data
-
Y.J. Huang, R. Tejero, R. Powers, and G.T. Montelione A topology-constrained distance network algorithm for protein structure determination from NOESY data Proteins 62 2006 587 603
-
(2006)
Proteins
, vol.62
, pp. 587-603
-
-
Huang, Y.J.1
Tejero, R.2
Powers, R.3
Montelione, G.T.4
-
17
-
-
0242355012
-
Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment
-
J. Jee, and P. Güntert Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment J. Struct. Funct. Genom. 4 2003 179 189
-
(2003)
J. Struct. Funct. Genom.
, vol.4
, pp. 179-189
-
-
Jee, J.1
Güntert, P.2
-
18
-
-
33644774471
-
Optimal isotope labelling for NMR protein structure determinations
-
M. Kainosho, T. Torizawa, Y. Iwashita, T. Terauchi, A.M. Ono, and P. Güntert Optimal isotope labelling for NMR protein structure determinations Nature 440 2006 52 57
-
(2006)
Nature
, vol.440
, pp. 52-57
-
-
Kainosho, M.1
Torizawa, T.2
Iwashita, Y.3
Terauchi, T.4
Ono, A.M.5
Güntert, P.6
-
19
-
-
79955968115
-
Objective identification of residue ranges for the superposition of protein structures
-
D.K. Kirchner, and P. Güntert Objective identification of residue ranges for the superposition of protein structures BMC Bioinformatics 12 2011 170
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 170
-
-
Kirchner, D.K.1
Güntert, P.2
-
20
-
-
84868611622
-
Principles for designing ideal protein structures
-
N. Koga, R. Tatsumi-Koga, G.H. Liu, R. Xiao, T.B. Acton, G.T. Montelione, and D. Baker Principles for designing ideal protein structures Nature 491 2012 222 227
-
(2012)
Nature
, vol.491
, pp. 222-227
-
-
Koga, N.1
Tatsumi-Koga, R.2
Liu, G.H.3
Xiao, R.4
Acton, T.B.5
Montelione, G.T.6
Baker, D.7
-
21
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
R.A. Laskowski, J.A.C. Rullmann, M.W. MacArthur, R. Kaptein, and J.M. Thornton AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR J. Biomol. NMR 8 1996 477 486
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.C.2
Macarthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
22
-
-
33749524593
-
Automated protein structure determination from NMR spectra
-
B. López-Méndez, and P. Güntert Automated protein structure determination from NMR spectra J. Am. Chem. Soc. 128 2006 13112 13122
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 13112-13122
-
-
López-Méndez, B.1
Güntert, P.2
-
23
-
-
11144357754
-
NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana
-
B. López-Méndez, D. Pantoja-Uceda, T. Tomizawa, S. Koshiba, T. Kigawa, M. Shirouzu, T. Terada, M. Inoue, T. Yabuki, and M. Aoki NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana J. Biomol. NMR 29 2004 205 206
-
(2004)
J. Biomol. NMR
, vol.29
, pp. 205-206
-
-
López-Méndez, B.1
Pantoja-Uceda, D.2
Tomizawa, T.3
Koshiba, S.4
Kigawa, T.5
Shirouzu, M.6
Terada, T.7
Inoue, M.8
Yabuki, T.9
Aoki, M.10
-
24
-
-
0026610767
-
Assessment of protein models with 3-dimensional profiles
-
R. Lüthy, J.U. Bowie, and D. Eisenberg Assessment of protein models with 3-dimensional profiles Nature 356 1992 83 85
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Lüthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
26
-
-
0141508959
-
Quantitative evaluation of experimental NMR restraints
-
S.B. Nabuurs, C. Spronk, E. Krieger, H. Maassen, G. Vriend, and G.W. Vuister Quantitative evaluation of experimental NMR restraints J. Am. Chem. Soc. 125 2003 12026 12034
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 12026-12034
-
-
Nabuurs, S.B.1
Spronk, C.2
Krieger, E.3
Maassen, H.4
Vriend, G.5
Vuister, G.W.6
-
27
-
-
33645790319
-
Traditional biomolecular structure determination by NMR spectroscopy allows for major errors
-
S.B. Nabuurs, C.A.E.M. Spronk, G.W. Vuister, and G. Vriend Traditional biomolecular structure determination by NMR spectroscopy allows for major errors PLoS Comp. Biol. 2 2006 71 79
-
(2006)
PLoS Comp. Biol.
, vol.2
, pp. 71-79
-
-
Nabuurs, S.B.1
Spronk, C.A.E.M.2
Vuister, G.W.3
Vriend, G.4
-
28
-
-
33846426840
-
Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form
-
S. Ohnishi, P. Güntert, S. Koshiba, T. Tomizawa, R. Akasaka, N. Tochio, M. Sato, M. Inoue, T. Harada, and S. Watanabe Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form FEBS Lett. 581 2007 462 468
-
(2007)
FEBS Lett.
, vol.581
, pp. 462-468
-
-
Ohnishi, S.1
Güntert, P.2
Koshiba, S.3
Tomizawa, T.4
Akasaka, R.5
Tochio, N.6
Sato, M.7
Inoue, M.8
Harada, T.9
Watanabe, S.10
-
29
-
-
33746268448
-
Solution structures of the first and fourth TSR domains of F-spondin
-
K. Pääkkönen, H. Tossavainen, P. Permi, H. Rakkolainen, H. Rauvala, E. Raulo, I. Kilpeläinen, and P. Güntert Solution structures of the first and fourth TSR domains of F-spondin Proteins 64 2006 665 672
-
(2006)
Proteins
, vol.64
, pp. 665-672
-
-
Pääkkönen, K.1
Tossavainen, H.2
Permi, P.3
Rakkolainen, H.4
Rauvala, H.5
Raulo, E.6
Kilpeläinen, I.7
Güntert, P.8
-
30
-
-
5444259437
-
NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana
-
D. Pantoja-Uceda, B. López-Méndez, S. Koshiba, T. Kigawa, M. Shirouzu, T. Terada, M. Inoue, T. Yabuki, M. Aoki, and E. Seki NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana J. Biomol. NMR 29 2004 207 208
-
(2004)
J. Biomol. NMR
, vol.29
, pp. 207-208
-
-
Pantoja-Uceda, D.1
López-Méndez, B.2
Koshiba, S.3
Kigawa, T.4
Shirouzu, M.5
Terada, T.6
Inoue, M.7
Yabuki, T.8
Aoki, M.9
Seki, E.10
-
31
-
-
19944428158
-
Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana
-
D. Pantoja-Uceda, B. López-Méndez, S. Koshiba, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, A. Tanaka, M. Seki, and K. Shinozaki Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana Protein Sci. 14 2005 224 230
-
(2005)
Protein Sci.
, vol.14
, pp. 224-230
-
-
Pantoja-Uceda, D.1
López-Méndez, B.2
Koshiba, S.3
Inoue, M.4
Kigawa, T.5
Terada, T.6
Shirouzu, M.7
Tanaka, A.8
Seki, M.9
Shinozaki, K.10
-
32
-
-
22144489530
-
Inferential structure determination
-
W. Rieping, M. Habeck, and M. Nilges Inferential structure determination Science 309 2005 303 306
-
(2005)
Science
, vol.309
, pp. 303-306
-
-
Rieping, W.1
Habeck, M.2
Nilges, M.3
-
33
-
-
33847283016
-
ARIA2: Automated NOE assignment and data integration in NMR structure calculation
-
W. Rieping, M. Habeck, B. Bardiaux, A. Bernard, T.E. Malliavin, and M. Nilges ARIA2: automated NOE assignment and data integration in NMR structure calculation Bioinformatics 23 2007 381 382
-
(2007)
Bioinformatics
, vol.23
, pp. 381-382
-
-
Rieping, W.1
Habeck, M.2
Bardiaux, B.3
Bernard, A.4
Malliavin, T.E.5
Nilges, M.6
-
34
-
-
69549138143
-
CASD-NMR: Critical assessment of automated structure determination by NMR
-
A. Rosato, A. Bagaria, D. Baker, B. Bardiaux, A. Cavalli, J.F. Doreleijers, A. Giachetti, P. Guerry, P. Güntert, and T. Herrmann CASD-NMR: critical assessment of automated structure determination by NMR Nat. Methods 6 2009 625 626
-
(2009)
Nat. Methods
, vol.6
, pp. 625-626
-
-
Rosato, A.1
Bagaria, A.2
Baker, D.3
Bardiaux, B.4
Cavalli, A.5
Doreleijers, J.F.6
Giachetti, A.7
Guerry, P.8
Güntert, P.9
Herrmann, T.10
-
35
-
-
84863011912
-
Blind testing of routine, fully automated determination of protein structures from NMR data
-
A. Rosato, J.M. Aramini, C. Arrowsmith, A. Bagaria, D. Baker, A. Cavalli, J.F. Doreleijers, A. Eletsky, A. Giachetti, and P. Guerry Blind testing of routine, fully automated determination of protein structures from NMR data Structure 20 2012 227 236
-
(2012)
Structure
, vol.20
, pp. 227-236
-
-
Rosato, A.1
Aramini, J.M.2
Arrowsmith, C.3
Bagaria, A.4
Baker, D.5
Cavalli, A.6
Doreleijers, J.F.7
Eletsky, A.8
Giachetti, A.9
Guerry, P.10
-
36
-
-
52049100956
-
The war of tools: How can NMR spectroscopists detect errors in their structures?
-
E. Saccenti, and A. Rosato The war of tools: how can NMR spectroscopists detect errors in their structures? J. Biomol. NMR 40 2008 251 261
-
(2008)
J. Biomol. NMR
, vol.40
, pp. 251-261
-
-
Saccenti, E.1
Rosato, A.2
-
37
-
-
84892937420
-
Reliability of exclusively NOESY-based automated resonance assignment and structure determination of proteins
-
E. Schmidt, and P. Güntert Reliability of exclusively NOESY-based automated resonance assignment and structure determination of proteins J. Biomol. NMR 57 2013 193 204
-
(2013)
J. Biomol. NMR
, vol.57
, pp. 193-204
-
-
Schmidt, E.1
Güntert, P.2
-
38
-
-
21044434011
-
NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES
-
A. Scott, D. Pantoja-Uceda, S. Koshiba, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, A. Tanaka, S. Sugano, and S. Yokoyama NMR assignment of the SH2 domain from the human feline sarcoma oncogene FES J. Biomol. NMR 30 2004 463 464
-
(2004)
J. Biomol. NMR
, vol.30
, pp. 463-464
-
-
Scott, A.1
Pantoja-Uceda, D.2
Koshiba, S.3
Inoue, M.4
Kigawa, T.5
Terada, T.6
Shirouzu, M.7
Tanaka, A.8
Sugano, S.9
Yokoyama, S.10
-
39
-
-
24644440227
-
Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes
-
A. Scott, D. Pantoja-Uceda, S. Koshiba, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, A. Tanaka, S. Sugano, and S. Yokoyama Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes J. Biomol. NMR 31 2005 357 361
-
(2005)
J. Biomol. NMR
, vol.31
, pp. 357-361
-
-
Scott, A.1
Pantoja-Uceda, D.2
Koshiba, S.3
Inoue, M.4
Kigawa, T.5
Terada, T.6
Shirouzu, M.7
Tanaka, A.8
Sugano, S.9
Yokoyama, S.10
-
40
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
Y. Shen, F. Delaglio, G. Cornilescu, and A. Bax TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts J. Biomol. NMR 44 2009 213 223
-
(2009)
J. Biomol. NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
41
-
-
0027490731
-
Recognition of errors in 3-dimensional structures of proteins
-
M.J. Sippl Recognition of errors in 3-dimensional structures of proteins Proteins 17 1993 355 362
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
42
-
-
0037357143
-
The precision of NMR structure ensembles revisited
-
C.A.E.M. Spronk, S.B. Nabuurs, A.M.J.J. Bonvin, E. Krieger, G.W. Vuister, and G. Vriend The precision of NMR structure ensembles revisited J. Biomol. NMR 25 2003 225 234
-
(2003)
J. Biomol. NMR
, vol.25
, pp. 225-234
-
-
Spronk, C.A.E.M.1
Nabuurs, S.B.2
Bonvin, A.M.J.J.3
Krieger, E.4
Vuister, G.W.5
Vriend, G.6
-
43
-
-
9944221417
-
Validation of protein structures derived by NMR spectroscopy
-
C. Spronk, S.B. Nabuurs, E. Krieger, G. Vriend, and G.W. Vuister Validation of protein structures derived by NMR spectroscopy Prog. Nucl. Magn. Reson. Spectrosc. 45 2004 315 337
-
(2004)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.45
, pp. 315-337
-
-
Spronk, C.1
Nabuurs, S.B.2
Krieger, E.3
Vriend, G.4
Vuister, G.W.5
-
44
-
-
0033529633
-
NMR structure and metal interactions of the CopZ copper chaperone
-
R. Wimmer, T. Herrmann, M. Solioz, and K. Wüthrich NMR structure and metal interactions of the CopZ copper chaperone J. Biol. Chem. 274 1999 22597 22603
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 22597-22603
-
-
Wimmer, R.1
Herrmann, T.2
Solioz, M.3
Wüthrich, K.4
-
45
-
-
0028232369
-
An assessment of the precision and accuracy of protein structures determined by NMR: Dependence on distance errors
-
D.Q. Zhao, and O. Jardetzky An assessment of the precision and accuracy of protein structures determined by NMR: dependence on distance errors J. Mol. Biol. 239 1994 601 607
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 601-607
-
-
Zhao, D.Q.1
Jardetzky, O.2
|