DEFECTIVE KERNEL 1 promotes and maintains plant epidermal differentiation

Development (Cambridge)

Volumn 142, Issue 11, 2015, Pages 1978-1983

  Galletti, Roberta ^a   Johnson, Kim L ^b   Scofield, Simon ^c   San Bento, Rita ^a   Watt, Andrea M ^b   Murray, James A H ^c   Ingram, Gwyneth C ^a  

^a UNIVERSITÉ DE LYON   (France)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c CARDIFF UNIVERSITY   (United Kingdom)

Author keywords

Arabidopsis thaliana; DEK1; Differentiation maintenance; Epidermis

Indexed keywords

CALPAIN; CYCLIN D3; ARABIDOPSIS PROTEIN; DEK1 PROTEIN, ARABIDOPSIS; HOMEODOMAIN PROTEIN; LEUCINE ZIPPER PROTEIN; MESSENGER RNA;

ARABIDOPSIS; ARTICLE; CELL ADHESION; CELL COMMUNICATION; CELL CYCLE; CELL DIFFERENTIATION; CELL EXPANSION; CELL SHAPE; CONTROLLED STUDY; COTYLEDON; DEK1 GENE; ENDOREDUPLICATION; GENE EXPRESSION; HD ZIP IV GENE; NONHUMAN; PLANT EPIDERMIS CELL; PLANT GENE; PLANT GROWTH; PLANT TISSUE; PLOIDY; PRIORITY JOURNAL; SEPAL; CELL PROLIFERATION; CYTOLOGY; FLOWER; GENE EXPRESSION REGULATION; GENE SILENCING; GENETICS; METABOLISM; MICROTUBULE; MUTATION; PHENOTYPE; PLANT EPIDERMIS; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CALPAIN; CELL COMMUNICATION; CELL CYCLE; CELL DIFFERENTIATION; CELL PROLIFERATION; CELL SHAPE; COTYLEDON; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; GENES, PLANT; HOMEODOMAIN PROTEINS; LEUCINE ZIPPERS; MICROTUBULES; MUTATION; PHENOTYPE; PLANT EPIDERMIS; PLOIDIES; RNA, MESSENGER; SIGNAL TRANSDUCTION;

EID: 84929884884     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.122325     Document Type: Article

References (45)

1. Abe, M., Katsumata, H., Komeda, Y. and Takahashi, T. (2003). Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Development 130, 635-643.
2. Ahn, J.-W., Kim, M., Lim, J. H., Kim, G.-T. and Pai, H.-S. (2004). Phytocalpain controls the proliferation and differentiation fates of cells in plant organ development. Plant J. 38, 969-981.
3. Becraft, P. W., Stinard, P. S. and McCarty, D. R. (1996). CRINKLY4: a TNFR-like receptor kinase involved in maize epidermal differentiation. Science 273, 1406-1409.
4. Becraft, P. W., Li, K., Dey, N. and Asuncion-Crabb, Y. (2002). The maize dek1 gene functions in embryonic pattern formation and cell fate specification. Development 129, 5217-5225.
5. Boudaoud, A., Burian, A., Borowska-Wykręt, D., Uyttewaal, M., Wrzalik, R., Kwiatkowska, D. and Hamant, O. (2014). FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images. Nat. Protoc. 9, 457-463.
6. Craft, J., Samalova, M., Baroux, C., Townley, H., Martinez, A., Jepson, I., Tsiantis, M. and Moore, I. (2005). New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis. Plant J. 41, 899-918.
7. Demko, V., Perroud, P.-F., Johansen, W., Delwiche, C. F., Cooper, E. D., Remme, P., Ako, A. E., Kugler, K. G., Mayer, K. F. X., Quatrano, R. et al. (2014). Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens. Plant Physiol. 166, 903-919.
8. Depege-Fargeix, N., Javelle, M., Chambrier, P., Frangne, N., Gerentes, D., Perez, P., Rogowsky, P. M. and Vernoud, V. (2011). Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize. J. Exp. Bot. 62, 293-305.
9. Dewitte, W., Scofield, S., Alcasabas, A. A., Maughan, S. C., Menges, M., Braun, N., Collins, C., Nieuwland, J., Prinsen, E., Sundaresan, V. et al. (2007). Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses. Proc. Natl. Acad. Sci. USA 104, 14537-14542.
10. Di Cristina, M., Sessa, G., Dolan, L., Linstead, P., Baima, S., Ruberti, I. and Morelli, G. (1996). The Arabidopsis Athb-10 (GLABRA2) is an HD-Zip protein required for regulation of root hair development. Plant J. 10, 393-402.
11. Ferrari, S., Galletti, R., Vairo, D., Cervone, F. and De Lorenzo, G. (2006). Antisense expression of the Arabidopsis thaliana AtPGIP1 gene reduces polygalacturonase-inhibiting protein accumulation and enhances susceptibility to Botrytis cinerea. Mol. Plant Microbe Interact. 19, 931-936.
12. Galletti, R., Denoux, C., Gambetta, S., Dewdney, J., Ausubel, F. M., De Lorenzo, G. and Ferrari, S. (2008). The AtrbohD-mediated oxidative burst elicited by oligogalacturonides in Arabidopsis is dispensable for the activation of defense responses effective against Botrytis cinerea. Plant Physiol. 148, 1695-1706.
13. Glover, B. J. (2000). Differentiation in plant epidermal cells. J. Exp. Bot. 51, 497-505.
14. Horstman, A., Fukuoka, H., Muino, J. M., Nitsch, L., Guo, C., Passarinho, P., Sanchez-Perez, G., Immink, R., Angenent, G. and Boutilier, K. (2015). AIL and HDG proteins act antagonistically to control cell proliferation. Development 142, 454-464.
15. Ivakov, A. and Persson, S. (2013). Plant cell shape: modulators and measurements. Front. Plant Sci. 4, 439.
16. Javelle, M., Vernoud, V., Depege-Fargeix, N., Arnould, C., Oursel, D., Domergue, F., Sarda, X. and Rogowsky, P. M. (2010). Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor Outer Cell Layer1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis. Plant Physiol. 154, 273-286.
17. Javelle, M., Klein-Cosson, C., Vernoud, V., Boltz, V., Maher, C., Timmermans, M., Depege-Fargeix, N. and Rogowsky, P. M. (2011a). Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis. Plant Physiol. 157, 790-803.
18. Javelle, M., Vernoud, V., Rogowsky, P. M. and Ingram, G. C. (2011b). Epidermis: the formation and functions of a fundamental plant tissue. New Phytol. 189, 17-39.
19. Johnson, K. L., Degnan, K. A., Ross Walker, J. and Ingram, G. C. (2005). AtDEK1 is essential for specification of embryonic epidermal cell fate. Plant J. 44, 114-127.
20. Johnson, K. L., Faulkner, C., Jeffree, C. E. and Ingram, G. C. (2008). The phytocalpain defective kernel 1 is a novel Arabidopsis growth regulator whose activity is regulated by proteolytic processing. Plant Cell 20, 2619-2630.
21. Lee, L.-Y. and Gelvin, S. B. (2008). T-DNA binary vectors and systems. Plant Physiol. 146, 325-332.
22. Liang, Z., Demko, V., Wilson, R. C., Johnson, K. A., Ahmad, R., Perroud, P.-F., Quatrano, R., Zhao, S., Shalchian-Tabrizi, K., Otegui, M. S. et al. (2013). The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. Plant J. 75, 742-754.
23. Lid, S. E., Gruis, D., Jung, R., Lorentzen, J. A., Ananiev, E., Chamberlin, M., Niu, X., Meeley, R., Nichols, S. and Olsen, O.-A. (2002). The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily. Proc. Natl. Acad. Sci. USA 99, 5460-5465.
24. Lid, S. E., Olsen, L., Nestestog, R., Aukerman, M., Brown, R. C., Lemmon, B., Mucha, M., Opsahl-Sorteberg, H.-G. and Olsen, O.-A. (2005). Mutation in the Arabidopisis thaliana DEK1 calpain gene perturbs endosperm and embryo development while over-expression affects organ development globally. Planta 221, 339-351.
25. Mathur, J. and Koncz, C. (1997). Method for preparation of epidermal imprints using agarose. Biotechniques 22, 280-282.
26. Nakamura, M., Katsumata, H., Abe, M., Yabe, N., Komeda, Y., Yamamoto, K. T. and Takahashi, T. (2006). Characterization of the class IV homeodomain-leucine zipper gene family in Arabidopsis. Plant Physiol. 141, 1363-1375.
27. Ossowski, S., Schwab, R. and Weigel, D. (2008). Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J. 53, 674-690.
28. Perroud, P.-F., Demko, V., Johansen, W., Wilson, R. C., Olsen, O.-A. and Quatrano, R. S. (2014). Defective Kernel 1 (DEK1) is required for three-dimensional growth in Physcomitrella patens. New Phytol. 203, 794-804.
29. Peterson, K. M., Shyu, C., Burr, C. A., Horst, R. J., Kanaoka, M. M., Omae, M., Sato, Y. and Torii, K. U. (2013). Arabidopsis homeodomain-leucine zipper IV proteins promote stomatal development and ectopically induce stomata beyond the epidermis. Development 140, 1924-1935.
30. Richardson, L. G. L. and Torii, K. U. (2013). Take a deep breath: peptide signalling in stomatal patterning and differentiation. J. Exp. Bot. 64, 5243-5251.
31. Roeder, A. H. K., Cunha, A., Ohno, C. K. and Meyerowitz, E. M. (2012). Cell cycle regulates cell type in the Arabidopsis sepal. Development 139, 4416-4427.
32. Samalova, M., Brzobohaty, B. and Moore, I. (2005). pOp6/LhGR: a stringently regulated and highly responsive dexamethasone-inducible gene expression system for tobacco. Plant J. 41, 919-935.
33. Sampathkumar, A., Krupinski, P., Wightman, R., Milani, P., Berquand, A., Boudaoud, A., Hamant, O., Jönsson, H. and Meyerowitz, E. M. (2014). Subcellular and supracellular mechanical stress prescribes cytoskeleton behavior in Arabidopsis cotyledon pavement cells. Elife 3, e01967.
34. San-Bento, R., Farcot, E., Galletti, R., Creff, A. and Ingram, G. (2014). Epidermal identity is maintained by cell-cell communication via a universally active feedback loop in Arabidopsis thaliana. Plant J. 77, 46-58.
35. Schiefelbein, J., Huang, L. and Zheng, X. (2014). Regulation of epidermal cell fate in Arabidopsis roots: the importance of multiple feedback loops. Front. Plant Sci. 5, 47.
36. Scofield, S., Dewitte, W., Nieuwland, J. and Murray, J. A. H. (2013). The Arabidopsis homeobox gene SHOOT MERISTEMLESS has cellular and meristem-organisational roles with differential requirements for cytokinin and CYCD3 activity. Plant J. 75, 53-66.
37. Singh, S. K., Eland, C., Harholt, J., Scheller, H. V. and Marchant, A. (2005). Cell adhesion in Arabidopsis thaliana is mediated by ECTOPICALLY PARTING CELLS 1–a glycosyltransferase (GT64) related to the animal exostosins. Plant J. 43, 384-397.
38. Takada, S. and Iida, H. (2014). Specification of epidermal cell fate in plant shoots. Front. Plant Sci. 5, 49.
39. Takada, S., Takada, N. and Yoshida, A. (2013). ATML1 promotes epidermal cell differentiation in Arabidopsis shoots. Development 140, 1919-1923.
40. Ueda, K., Matsuyama, T. and Hashimoto, T. (1999). Visualization of microtubules in living cells of transgenic Arabidopsis thaliana. Protoplasma 206, 201-206.
41. Vernoud, V., Laigle, G., Rozier, F., Meeley, R. B., Perez, P. and Rogowsky, P. M. (2009). The HD-ZIP IV transcription factor OCL4 is necessary for trichome patterning and anther development in maize. Plant J. 59, 883-894.
42. Wu, R., Li, S., He, S., Wassmann, F., Yu, C., Qin, G., Schreiber, L., Qu, L.-J. and Gu, H. (2011). CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis. Plant Cell 23, 3392-3411.
43. Xing, Q., Creff, A., Waters, A., Tanaka, H., Goodrich, J. and Ingram, G. C. (2013). ZHOUPI controls embryonic cuticle formation via a signalling pathway involving the subtilisin protease ABNORMAL LEAF-SHAPE1 and the receptor kinases GASSHO1 and GASSHO2. Development 140, 770-779.
44. Yang, C., Li, H., Zhang, J., Luo, Z., Gong, P., Zhang, C., Li, J., Wang, T., Zhang, Y., Lu, Y. et al. (2011). A regulatory gene induces trichome formation and embryo lethality in tomato. Proc. Natl. Acad. Sci. USA 108, 11836-11841.
45. Zalewski, C. S., Floyd, S. K., Furumizu, C., Sakakibara, K., Stevenson, D. W. and Bowman, J. L. (2013). Evolution of the class IV HD-zip gene family in streptophytes. Mol. Biol. Evol. 30, 2347-2365.