Defective Kernel 1 (DEK1) is required for three-dimensional growth in Physcomitrella patens

New Phytologist

Volumn 203, Issue 3, 2014, Pages 794-804

  Perroud, Pierre François ^a   Demko, Viktor ^b   Johansen, Wenche ^c   Wilson, Robert C ^c   Olsen, Odd Arne ^b   Quatrano, Ralph S ^a  

^a WASHINGTON UNIVERSITY   (United States)

^b NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^c INLAND NORWAY UNIVERSITY OF APPLIED SCIENCES   (Norway)

Author keywords

Cell division; DEK1; Meristem; Physcomitrella patens; Plant morphogenesis; Three dimensional development

Indexed keywords

CELL ORGANELLE; DEVELOPMENTAL BIOLOGY; MORPHOGENESIS; MOSS; MUTATION; PHENOTYPE; PROTEIN; THREE-DIMENSIONAL MODELING;

COMPLEMENTARY DNA; VEGETABLE PROTEIN;

BRYOPSIDA; CHEMISTRY; FLOWER; GENE DELETION; GENETIC COMPLEMENTATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; OPEN READING FRAME; PHENOTYPE; PROTEIN TERTIARY STRUCTURE;

BRYOPSIDA; DNA, COMPLEMENTARY; GENE DELETION; GENETIC COMPLEMENTATION TEST; GERM CELLS, PLANT; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHENOTYPE; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY;

EID: 84903973628     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12844     Document Type: Article

References (35)

1. Abramoff MD, Magalhaes PJ, Ram SJ. 2004. Image processing with ImageJ. Biophotonics International 11: 36-42.
2. Ahn JW, Kim M, Lim JH, Kim GT, Pai HS. 2004. Phytocalpain controls the proliferation and differentiation fates of cells in plant organ development. The Plant Journal 38: 969-981.
3. Aoyama T, Hiwatashi Y, Shigyo M, Kofuji R, Kubo M, Ito M, Hasebe M. 2012. Ap2-type transcription factors determine stem cell identity in the moss Physcomitrella patens. Development 139: 3120-3129.
4. Becraft PW, Li K, Dey N, Asuncion-Crabb Y. 2002. The maize dek1 gene functions in embryonic pattern formation and cell fate specification. Development 129: 5217-5225.
5. Brown RC, Lemmon BE. 1995. Methods in plant immunolight microscopy. Methods in Cell Biology 49: 85-107.
6. Cove DJ, Bezanilla M, Harries P, Quatrano RS. 2006. Mosses as model systems for the study of metabolism and development. Annual Review of Plant Biology 57: 497-520.
7. Cove DJ, Perroud P-F, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS. 2009. The moss Physcomitrella patens. A novel model system for plant development and genomic studies. In: Crotty DA, Gann A, eds. Emerging model organisms, a laboratory manual. New York, NY, USA: Cold Spring Harbor Laboratory Press, 69-104.
8. De Smet I, Beeckman T. 2011. Asymmetric cell division in land plants and algae: the driving force for differentiation. Nature Reviews Molecular Cell Biology 12: 177-188.
9. Gruis DF, Guo H, Selinger D, Tian Q, Olsen OA. 2006. Surface position, not signaling from surrounding maternal tissues, specifies aleurone epidermal cell fate in maize. Plant Physiology 141: 898-909.
10. Hahn H, Bopp M. 1968. A cytokinin test with high specifcity. Planta 83: 115-118.
11. Harrison CJ, Roeder AH, Meyerowitz EM, Langdale JA. 2009. Local cues and asymmetric cell divisions underpin body plan transitions in the moss Physcomitrella patens. Current Biology 19: 461-471.
12. Johnson KL, Degnan KA, Walker JR, Ingram GC. 2005. Atdek1 is essential for specification of embryonic epidermal cell fate. Plant Journal 44: 114-127.
13. Johnson KL, Faulkner C, Jeffree CE, Ingram GC. 2008. The phytocalpain defective kernel 1 is a novel Arabidopsis growth regulator whose activity is regulated by proteolytic processing. Plant Cell 20: 2619-2630.
14. Liang Z, Demko V, Wilson R, Johnson K, Ahmad R, Perroud P-F, Quatrano RS, Zhao S, Shalchian-Tabrizi K, Otegui M et al. 2013. The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. Plant Journal 75: 742-754.
15. Lid SE, Gruis D, Jung R, Lorentzen JA, Ananiev E, Chamberlin M, Niu X, Meeley R, Nichols S, Olsen OA. 2002. The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily. Proceedings of the National Academy of Sciences, USA 99: 5460-5465.
16. Lid SE, Olsen L, Nestestog R, Aukerman M, Brown RC, Lemmon B, Mucha M, Opsahl-Sorteberg HG, Olsen OA. 2005. Mutation in the Arabidopisis thaliana DEK1 calpain gene perturbs endosperm and embryo development while over-expression affects organ development globally. Planta 221: 339-351.
17. Maizel A, Busch MA, Tanahashi T, Perkovic J, Kato M, Hasebe M, Weigel D. 2005. The floral regulator LEAFY evolves by substitutions in the DNA binding domain. Science 308: 260-263.
18. Marella HH, Sakata Y, Quatrano RS. 2006. Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens. Plant Journal 6: 1032-1044.
19. Margis R, Margis-Pinheiro M. 2003. Phytocalpains: orthologous calcium-dependent cysteine proteinases. Trends in Plant Science 8: 58-62.
20. Menand B, Yi K, Jouannic S, Hoffmann L, Ryan E, Linstead P, Schaefer DG, Dolan L. 2007. An ancient mechanism controls the development of cells with a rooting function in land plants. Science 316: 1477-1480.
21. Mosquna A, Katz A, Decker EL, Rensing SA, Reski R, Ohad N. 2009. Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution. Development 136: 2433-2444.
22. Perroud P-F, Cove DJ, Quatrano RS, McDaniel SF. 2011. An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines. New Phytologist 191: 301-306.
23. Perroud P-F, Quatrano RS. 2006. The role of ARPC4 in tip growth and alignment of the polar axis in filaments of Physcomitrella patens. Cell Motility and the Cytoskeleton 63: 162-171.
24. Perroud P-F, Quatrano RS. 2008. BRICK1 is required for spical vell growth in filaments of the moss Physcomitrella patens but not for gametophore morphology. Plant Cell 20: 411-422.
25. Quatrano RS, Shaw S. 1997. Role of the cell wall in the determination of cell polarity and the plane of cell division in fucus embryos. Trends in Plant Science 2: 15-21.
26. Ramsussen CG, Humphries JA, Smith LG. 2011. Determination of symmetric and asymmetric division planes in plant vells. Annual Review of Plant Biology 62: 387-409.
27. Roeder AH, Cunha A, Ohno CK, Meyerowitz EM. 2012. Cell cycle regulates cell type in the Arabidopsis sepal. Development 139: 4416-4427.
28. Schaefer DG. 2002. A new moss genetics: targeted mutagenesis in Physcomitrella patens. Annual Review of Plant Biology 53: 477-501.
29. Schaefer DG, Delacote F, Charlot F, Vrielynck N, Guyon-Debast A, Le Guin S, Neuhaus JM, Doutriaux MP, Nogue F. 2010. Rad51 loss of function abolishes gene targeting and de-represses illegitimate integration in the moss Physcomitrella patens. DNA Repair (Amst) 9: 526-533.
30. von Schwartzenberg K, Nunez MF, Blaschke H, Dobrev PI, Novak O, Motyka V, Strnad M. 2007. Cytokinins in the bryophyte Physcomitrella patens: analyses of activity, distribution, and cytokinin oxidase/dehydrogenase overexpression reveal the role of extracellular cytokinins. Plant Physiology 145: 786-800.
31. Tian Q, Olsen L, Sun B, Lid SE, Brown RC, Lemmon BE, Fosnes K, Gruis DF, Opsahl-Sorteberg HG, Otegui MS et al. 2007. Subcellular localization and functional domain studies of defective kernel1 in maize and arabidopsis suggest a model for aleurone cell fate specification involving crinkly4 and supernumerary aleurone layer1. Plant Cell 19: 3127-3145.
32. Trouiller B, Schaefer DG, Charlot F, Nogué F. 2006. MSH2 is essential for the preservation of genome integrity and prevents homeologous recombination in the moss Physcomitrella patens. Nucleic Acids Research 34: 232-242.
33. Vitha S, Baluska F, Volkmann D, Barlow PW. 2000. Steedman's wax for F-actin visualization. In: Baluska F, Barlow PW, Staiger CJ, Volkmann D, eds. Actin: a dynamic framework for multiple plant cell functions. Dordrecht, the Netherlands: Kluwer Academic Publishers, 619-636.
34. Zhao S, Liang Z, Demko V, Wilson R, Johansen W, Olsen O-A, Shalchian-Tabrizi K. 2012. Massive expansion of the calpain gene family among unicellular eukaryotes. BMC Evolutionary Biology 12: 193-205.
35. Zimmermann P, Laule O, Schmitz J, Hruz T, Bleuler S, Gruissem W. 2008. Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases. Molecular Plant 1: 851-857.