Confident site localization using a simulated phosphopeptide spectral library

Journal of Proteome Research

Volumn 14, Issue 5, 2015, Pages 2348-2359

  Suni, Veronika ^a,b   Imanishi, Susumu Y ^a   Maiolica, Alessio ^c   Aebersold, Ruedi ^c,d   Corthals, Garry L ^a,e  

^a UNIVERSITY OF TURKU   (Finland)

^b TURKU CENTRE FOR COMPUTER SCIENCE   (Finland)

^c ETH ZURICH   (Switzerland)

^d UNIVERSITY OF ZURICH   (Switzerland)

^e UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

beam type CID; LC MS MS; phosphoproteomics; phosphorylation site localization; spectral library searching; spectral simulation

Indexed keywords

ALKALINE PHOSPHATASE; PHOSPHOPEPTIDE; PEPTIDE LIBRARY;

ARTICLE; DISSOCIATION; FEMALE; HELA CELL LINE; HIGHER ENERGY COLLISIONAL DISSOCIATION; HUMAN; HUMAN CELL; PEPTIDE LIBRARY; PRIORITY JOURNAL; PROTEIN DEPHOSPHORYLATION; PROTEIN LOCALIZATION; PROTEIN PHOSPHORYLATION; SEQUENCE DATABASE; VALIDATION STUDY; ALGORITHM; AMINO ACID SEQUENCE; CHEMICAL MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; LIQUID CHROMATOGRAPHY; MOLECULAR GENETICS; PHOSPHORYLATION; PROCEDURES; PROTEOMICS; SYNTHESIS; TANDEM MASS SPECTROMETRY;

ALGORITHMS; AMINO ACID SEQUENCE; CHROMATOGRAPHY, LIQUID; COMPUTER SIMULATION; HELA CELLS; HUMANS; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PHOSPHOPEPTIDES; PHOSPHORYLATION; PROTEOMICS; SOFTWARE; TANDEM MASS SPECTROMETRY;

EID: 84929660951     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.5b00050     Document Type: Article

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