-
1
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC, Ambros V. Role of microRNAs in plant and animal development. Science. 2003;301:336-8.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
3
-
-
79551618858
-
miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis
-
Xing S, Salinas M, Höhmann S, Berndtgen R, Huijser P. miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis. Plant Cell. 2011;22:3935-50.
-
(2011)
Plant Cell
, vol.22
, pp. 3935-3950
-
-
Xing, S.1
Salinas, M.2
Höhmann, S.3
Berndtgen, R.4
Huijser, P.5
-
4
-
-
71049136041
-
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
-
Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, et al. Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol. 2009;151:2120-32.
-
(2009)
Plant Physiol
, vol.151
, pp. 2120-2132
-
-
Hsieh, L.C.1
Lin, S.I.2
Shih, A.C.3
Chen, J.W.4
Lin, W.Y.5
Tseng, C.Y.6
-
5
-
-
84859073075
-
MicroRNA expression analysis in the cellulosic biofuel crop Switchgrass Panicum virgatum under abiotic stress
-
Sun G, Stewart CN, Xiao P, Zhang B. MicroRNA expression analysis in the cellulosic biofuel crop Switchgrass Panicum virgatum under abiotic stress. PLoS One. 2012;7:e32017.
-
(2012)
PLoS One
, vol.7
, pp. e32017
-
-
Sun, G.1
Stewart, C.N.2
Xiao, P.3
Zhang, B.4
-
6
-
-
84861862996
-
Uncovering small RNA-mediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing
-
Tang Z, Zhang L, Xu C, Yuan S, Zhang F, Zhen Y, et al. Uncovering small RNA-mediated responses to cold stress in a wheat thermosensitive genic male-sterile line by deep sequencing. Plant Physiol. 2012;159:721-38.
-
(2012)
Plant Physiol
, vol.159
, pp. 721-738
-
-
Tang, Z.1
Zhang, L.2
Xu, C.3
Yuan, S.4
Zhang, F.5
Zhen, Y.6
-
7
-
-
84870823419
-
Identification of wild soybean miRNAs and their target genes responsive to aluminum stress
-
Zeng QY, Yang CY, Ma QB, Li XP, Dong WW, Nian H. Identification of wild soybean miRNAs and their target genes responsive to aluminum stress. BMC Plant Biol. 2012;12:182.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 182
-
-
Zeng, Q.Y.1
Yang, C.Y.2
Ma, Q.B.3
Li, X.P.4
Dong, W.W.5
Nian, H.6
-
8
-
-
84883167952
-
Biogenesis, turnover, and mode of action of plant microRNAs
-
Rogers K, Chen X. Biogenesis, turnover, and mode of action of plant microRNAs. Plant Cell. 2013;25:2383-99.
-
(2013)
Plant Cell
, vol.25
, pp. 2383-2399
-
-
Rogers, K.1
Chen, X.2
-
9
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 2006;20:3407-25.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
10
-
-
22144464033
-
Cloning and characterization of microRNAs from rice
-
Sunkar R, Girke T, Jain PK, Zhu JK. Cloning and characterization of microRNAs from rice. Plant Cell. 2005;17:1397-411.
-
(2005)
Plant Cell
, vol.17
, pp. 1397-1411
-
-
Sunkar, R.1
Girke, T.2
Jain, P.K.3
Zhu, J.K.4
-
11
-
-
66249128639
-
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs
-
Szarzynska B, Sobkowiak L, Pant BD, Balazadeh S, Scheible WR, Mueller-Roeber B, et al. Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res. 2009;37:3083-93.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3083-3093
-
-
Szarzynska, B.1
Sobkowiak, L.2
Pant, B.D.3
Balazadeh, S.4
Scheible, W.R.5
Mueller-Roeber, B.6
-
12
-
-
42449099982
-
Dual coding of siRNAs and miRNAs by plant transposable elements
-
Piriyapongsa J, Jordan IK. Dual coding of siRNAs and miRNAs by plant transposable elements. RNA. 2008;14:814-21.
-
(2008)
RNA
, vol.14
, pp. 814-821
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
13
-
-
84864020757
-
Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL
-
Lucas SJ, Budak H. Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL. PLoS One. 2012;7:e40859.
-
(2012)
PLoS One
, vol.7
, pp. e40859
-
-
Lucas, S.J.1
Budak, H.2
-
14
-
-
70350029271
-
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat Triticum aestivum L. and Brachypodium distachyon L Beauv
-
Wei B, Cai T, Zhang R, Li A, Huo N, Li S, et al. Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat Triticum aestivum L. and Brachypodium distachyon L Beauv. Funct Integr Genomics. 2009;9:499-511.
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 499-511
-
-
Wei, B.1
Cai, T.2
Zhang, R.3
Li, A.4
Huo, N.5
Li, S.6
-
15
-
-
79953723492
-
Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing
-
Xin M, Wang Y, Yao Y, Song N, Hu Z, Qin D, et al. Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing. BMC Plant Biol. 2011;11:61.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 61
-
-
Xin, M.1
Wang, Y.2
Yao, Y.3
Song, N.4
Hu, Z.5
Qin, D.6
-
16
-
-
84870297952
-
Subgenomic analysis of microRNAs in polyploid wheat
-
Kantar M, Akpinar BA, Valárik M, Lucas SJ, Doležel J, Hernández P, et al. Subgenomic analysis of microRNAs in polyploid wheat. Funct Integr Genomics. 2012;12:465-79.
-
(2012)
Funct Integr Genomics
, vol.12
, pp. 465-479
-
-
Kantar, M.1
Akpinar, B.A.2
Valárik, M.3
Lucas, S.J.4
Doležel, J.5
Hernández, P.6
-
17
-
-
84875886528
-
Draft genome of the wheat A-genome progenitor Triticum urartu
-
Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, et al. Draft genome of the wheat A-genome progenitor Triticum urartu. Nature. 2013;496(7443):87-90.
-
(2013)
Nature
, vol.496
, Issue.7443
, pp. 87-90
-
-
Ling, H.Q.1
Zhao, S.2
Liu, D.3
Wang, J.4
Sun, H.5
Zhang, C.6
-
18
-
-
84885358604
-
Identification of UV-B-induced microRNAs in wheat
-
Wang B, Sun YF, Song N, Wan XJG, Feng H, Huang LL, et al. Identification of UV-B-induced microRNAs in wheat. Genet Mol Res. 2013;12:4213-21.
-
(2013)
Genet Mol Res
, vol.12
, pp. 4213-4221
-
-
Wang, B.1
Sun, Y.F.2
Song, N.3
Wan, X.J.G.4
Feng, H.5
Huang, L.L.6
-
19
-
-
84884540242
-
Identification of miRNAs and their targets in wheat Triticum aestivum L. by EST analysis
-
Han J, Kong ML, Xie H, Sun QP, Nan ZJ, Zhang QZ, et al. Identification of miRNAs and their targets in wheat Triticum aestivum L. by EST analysis. Genet Mol Res. 2013;12:3793-805.
-
(2013)
Genet Mol Res
, vol.12
, pp. 3793-3805
-
-
Han, J.1
Kong, M.L.2
Xie, H.3
Sun, Q.P.4
Nan, Z.J.5
Zhang, Q.Z.6
-
20
-
-
84880754873
-
Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing
-
Kurtoglu KY, Kantar M, Lucas SJ, Budak H. Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing. PLoS One. 2013;8:1932-6203.
-
(2013)
PLoS One
, vol.8
, pp. 1932-6203
-
-
Kurtoglu, K.Y.1
Kantar, M.2
Lucas, S.J.3
Budak, H.4
-
21
-
-
84884386975
-
Development-associated microRNAs in grains of wheat Triticum aestivum L
-
Meng F, Liu H, Wang K, Liu L, Wang S, Zha Y, et al. Development-associated microRNAs in grains of wheat Triticum aestivum L. BMC Plant Biol. 2013;13:140.
-
(2013)
BMC Plant Biol
, vol.13
, pp. 140
-
-
Meng, F.1
Liu, H.2
Wang, K.3
Liu, L.4
Wang, S.5
Zha, Y.6
-
22
-
-
84877096474
-
Identification of new stress-induced microRNA and their targets in wheat using computational approach
-
Pandey B, Gupta OP, Pandey DM, Sharma I, Sharma P. Identification of new stress-induced microRNA and their targets in wheat using computational approach. Plant Signal Behav. 2013;8:e23932.
-
(2013)
Plant Signal Behav
, vol.8
, pp. e23932
-
-
Pandey, B.1
Gupta, O.P.2
Pandey, D.M.3
Sharma, I.4
Sharma, P.5
-
23
-
-
84872413149
-
Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches
-
Li YF, Zheng Y, Jagadeeswaran G, Sunkar R. Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches. Plant Sci. 2013;203-204:17-24.
-
(2013)
Plant Sci
, vol.203-204
, pp. 17-24
-
-
Li, Y.F.1
Zheng, Y.2
Jagadeeswaran, G.3
Sunkar, R.4
-
24
-
-
84894068385
-
Computational identification and comparative analysis of miRNAs in wheat group 7 chromosomes
-
Deng P, Nie X, Wang L, Cui L, Liu P, Tong W, et al. Computational identification and comparative analysis of miRNAs in wheat group 7 chromosomes. Plant Mol Biol Rep. 2014;32:487-500.
-
(2014)
Plant Mol Biol Rep
, vol.32
, pp. 487-500
-
-
Deng, P.1
Nie, X.2
Wang, L.3
Cui, L.4
Liu, P.5
Tong, W.6
-
25
-
-
84903618373
-
mRNA and small RNA transcriptomes reveal Insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid Wheat
-
Li A, Liu D, Wu J, Zhao X, Hao M, Geng S, et al. mRNA and small RNA transcriptomes reveal Insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid Wheat. Plant Cell. 2014;26:1878-900.
-
(2014)
Plant Cell
, vol.26
, pp. 1878-1900
-
-
Li, A.1
Liu, D.2
Wu, J.3
Zhao, X.4
Hao, M.5
Geng, S.6
-
26
-
-
84902104114
-
Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)
-
Sun F, Guo G, Du J, Guo W, Peng H, Ni Z, et al. Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.). BMC Plant Bio. 2014;14:142.
-
(2014)
BMC Plant Bio
, vol.14
, pp. 142
-
-
Sun, F.1
Guo, G.2
Du, J.3
Guo, W.4
Peng, H.5
Ni, Z.6
-
27
-
-
84899479968
-
Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
-
Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, et al. Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.). BMC Genomics. 2014;15:289.
-
(2014)
BMC Genomics
, vol.15
, pp. 289
-
-
Han, R.1
Jian, C.2
Lv, J.3
Yan, Y.4
Chi, Q.5
Li, Z.6
-
28
-
-
84899708631
-
A comprehensive genome-wide study on tissue-specific and abiotic stress-specific miRNAs in Triticum aestivum
-
Pandey R, Joshi G, Bhardwaj AR, Agarwal M, Katiyar-Agarwal S. A comprehensive genome-wide study on tissue-specific and abiotic stress-specific miRNAs in Triticum aestivum. PLoS One. 2014;9(4):e95800.
-
(2014)
PLoS One
, vol.9
, Issue.4
, pp. e95800
-
-
Pandey, R.1
Joshi, G.2
Bhardwaj, A.R.3
Agarwal, M.4
Katiyar-Agarwal, S.5
-
29
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat Triticum aestivum L
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, et al. Cloning and characterization of microRNAs from wheat Triticum aestivum L. Genome Biol. 2007;8:R96.
-
(2007)
Genome Biol
, vol.8
, pp. R96
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
Zhu, J.K.6
-
30
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011;39(Database issue):D152-7.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.Database issue
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
31
-
-
75549083571
-
PMRD: plant microRNA database
-
Database issue
-
Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, et al. PMRD: plant microRNA database. Nucleic Acids Res. 2010;38(Database issue):D806-13.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D806-D813
-
-
Zhang, Z.1
Yu, J.2
Li, D.3
Zhang, Z.4
Liu, F.5
Zhou, X.6
-
32
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature. 2012;491:705-10.
-
(2012)
Nature
, vol.491
, pp. 705-710
-
-
Brenchley, R.1
Spannagl, M.2
Pfeifer, M.3
Barker, G.L.4
D'Amore, R.5
Allen, A.M.6
-
33
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, et al. Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res. 2005;5:78-91.
-
(2005)
Genome Res
, vol.5
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
Vance, V.6
-
34
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA. Identification and characterization of new plant microRNAs using EST analysis. Cell Res. 2005;15:336-60.
-
(2005)
Cell Res
, vol.15
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
Cobb, G.P.4
Anderson, T.A.5
-
35
-
-
77953214518
-
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
-
Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, et al. MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell. 2010;22:1074-89.
-
(2010)
Plant Cell
, vol.22
, pp. 1074-1089
-
-
Fahlgren, N.1
Jogdeo, S.2
Kasschau, K.D.3
Sullivan, C.M.4
Chapman, E.J.5
Laubinger, S.6
-
36
-
-
84855304145
-
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
-
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, et al. High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Res. 2012;22:163-76.
-
(2012)
Genome Res
, vol.22
, pp. 163-176
-
-
Breakfield, N.W.1
Corcoran, D.L.2
Petricka, J.J.3
Shen, J.4
Sae-Seaw, J.5
Rubio-Somoza, I.6
-
37
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, et al. Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol. 2008;26:407-15.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
-
38
-
-
84855293838
-
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 2012;40:37-52.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 37-52
-
-
Friedlander, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
39
-
-
67849114241
-
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
-
Hackenberg M, Sturm M, Langenberger D, Falcon-Perez JM, Aransay AM. miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 2009;37:W68-76.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W68-76
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcon-Perez, J.M.4
Aransay, A.M.5
-
40
-
-
79959953839
-
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments
-
Hackenberg M, Rodriguez-Ezpeleta N, Aransay AM. miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. Nucleic Acids Res. 2011;39:W132-8.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W132-W138
-
-
Hackenberg, M.1
Rodriguez-Ezpeleta, N.2
Aransay, A.M.3
-
41
-
-
84883477922
-
Computational prediction of the localization of microRNAs within their pre-miRNA
-
Leclercq M, Diallo AB, Blanchette M. Computational prediction of the localization of microRNAs within their pre-miRNA. Nucleic Acids Res. 2013;41:7200-11.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7200-7211
-
-
Leclercq, M.1
Diallo, A.B.2
Blanchette, M.3
-
42
-
-
60149090481
-
Criteria for annotation of plant microRNAs
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, et al. Criteria for annotation of plant microRNAs. Plant Cell. 2008;20:3186-90.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
Bowman, J.L.6
-
43
-
-
34547596338
-
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
-
Jiang P, Wu H, Wang W, Ma W, Sun X, Lu Z. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 2007;35:W339-44.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W339-W344
-
-
Jiang, P.1
Wu, H.2
Wang, W.3
Ma, W.4
Sun, X.5
Lu, Z.6
-
44
-
-
60849085436
-
HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models
-
Kadri S, Hinman V, Benos PV. HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models. BMC Bioinf. 2009;10:S35.
-
(2009)
BMC Bioinf
, vol.10
, pp. S35
-
-
Kadri, S.1
Hinman, V.2
Benos, P.V.3
-
45
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell. 2004;14:787-99.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
46
-
-
45849131260
-
Data mining for miRNAs and their targets in the Triticeae
-
Dryanova A, Zakharov A, Gulick PJ. Data mining for miRNAs and their targets in the Triticeae. Genome. 2008;51:433-43.
-
(2008)
Genome
, vol.51
, pp. 433-443
-
-
Dryanova, A.1
Zakharov, A.2
Gulick, P.J.3
-
47
-
-
43449107651
-
Identification and verification of microRNA in wheat Triticum aestivum
-
Jin W, Li N, Zhang B, Wu F, Li W, Guo A, et al. Identification and verification of microRNA in wheat Triticum aestivum. J Plant Res. 2008;121:351-5.
-
(2008)
J Plant Res
, vol.121
, pp. 351-355
-
-
Jin, W.1
Li, N.2
Zhang, B.3
Wu, F.4
Li, W.5
Guo, A.6
-
48
-
-
77954442650
-
Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum)
-
Yin ZJ, Shen FF. Identification and characterization of conserved microRNAs and their target genes in wheat (Triticum aestivum). Genet Mol Res. 2010;9:1186-96.
-
(2010)
Genet Mol Res
, vol.9
, pp. 1186-1196
-
-
Yin, Z.J.1
Shen, F.F.2
-
49
-
-
84863012576
-
Massive analysis of rice small RNAs: Mechanistic implications of regulated miRNAs and variants for differential target RNA cleavage
-
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyersm BC, et al. Massive analysis of rice small RNAs: Mechanistic implications of regulated miRNAs and variants for differential target RNA cleavage. Plant Cell. 2011;23:4185-207.
-
(2011)
Plant Cell
, vol.23
, pp. 4185-4207
-
-
Jeong, D.H.1
Park, S.2
Zhai, J.3
Gurazada, S.G.4
Paoli, E.5
Meyersm, B.C.6
-
50
-
-
79953086307
-
Evolution and functional diversification of miRNA genes
-
Cuperus JT, Fahlgren N, Carrington JC. Evolution and functional diversification of miRNA genes. Plant Cell. 2011;23:431-42.
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
51
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, et al. A uniform system for microRNA annotation. RNA. 2003;9:277-9.
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
Chen, X.6
-
52
-
-
77956989755
-
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants
-
Chen HM, Chen LT, Patel K, Li YH, Baulcombe DC, Wu SH. 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A. 2010;107:15269-74.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 15269-15274
-
-
Chen, H.M.1
Chen, L.T.2
Patel, K.3
Li, Y.H.4
Baulcombe, D.C.5
Wu, S.H.6
-
53
-
-
79953280104
-
Deep sequencing analysis of the developing mouse brain reveals a novel microRNA
-
Ling KH, Brautigan PJ, Hahn CN, Daish T, Rayner JR, Cheah PS, et al. Deep sequencing analysis of the developing mouse brain reveals a novel microRNA. BMC Genomics. 2011;12:176.
-
(2011)
BMC Genomics
, vol.12
, pp. 176
-
-
Ling, K.H.1
Brautigan, P.J.2
Hahn, C.N.3
Daish, T.4
Rayner, J.R.5
Cheah, P.S.6
-
54
-
-
57149107578
-
Differentiating protein-coding and noncoding RNA: challenges and ambiguities
-
Dinger ME, Pang KC, Mercer TR, Mattick JS. Differentiating protein-coding and noncoding RNA: challenges and ambiguities. PLoS Comput Biol. 2008;4:e1000176.
-
(2008)
PLoS Comput Biol
, vol.4
, pp. e1000176
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Mattick, J.S.4
-
55
-
-
30144436090
-
Plasma membrane lipids are the powerful components for early stage aluminum tolerance in triticale
-
Wagatsuma T, Ishikawa S, Uemura M, Mitsuhashi W, Kawamura T, Khan MSH, et al. Plasma membrane lipids are the powerful components for early stage aluminum tolerance in triticale. Soil Sci Plant Nutr. 2005;51:701-4.
-
(2005)
Soil Sci Plant Nutr
, vol.51
, pp. 701-704
-
-
Wagatsuma, T.1
Ishikawa, S.2
Uemura, M.3
Mitsuhashi, W.4
Kawamura, T.5
Khan, M.S.H.6
-
56
-
-
57649218641
-
Relative abundance of Delta 5-sterols in plasma membrane lipids of root-tip cells correlates with aluminum tolerance of rice
-
Khan MS, Tawaraya K, Sekimoto H, Koyama H, Kobayashi Y, Murayama T, et al. Relative abundance of Delta 5-sterols in plasma membrane lipids of root-tip cells correlates with aluminum tolerance of rice. Physiol Plant. 2009;135:73-83.
-
(2009)
Physiol Plant
, vol.135
, pp. 73-83
-
-
Khan, M.S.1
Tawaraya, K.2
Sekimoto, H.3
Koyama, H.4
Kobayashi, Y.5
Murayama, T.6
-
57
-
-
27744596243
-
Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis
-
Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW, Chen XY. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell. 2005;17:2204-16.
-
(2005)
Plant Cell
, vol.17
, pp. 2204-2216
-
-
Wang, J.W.1
Wang, L.J.2
Mao, Y.B.3
Cai, W.J.4
Xue, H.W.5
Chen, X.Y.6
-
58
-
-
84864495309
-
Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis
-
Gutierrez L, Mongelard G, Floková K, Pacurar DI, Novák O, Staswick P, et al. Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell. 2012;6:2515-27.
-
(2012)
Plant Cell
, vol.6
, pp. 2515-2527
-
-
Gutierrez, L.1
Mongelard, G.2
Floková, K.3
Pacurar, D.I.4
Novák, O.5
Staswick, P.6
-
59
-
-
49449105100
-
Structure and functional analysis of wheat ICE Inducer of CBF expression genes
-
Badawi M, Reddy YV, Agharbaoui Z, Tominaga Y, Danyluk J, Sarhan F, et al. Structure and functional analysis of wheat ICE Inducer of CBF expression genes. Plant Cell Physiol. 2008;49:1237-49.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1237-1249
-
-
Badawi, M.1
Reddy, Y.V.2
Agharbaoui, Z.3
Tominaga, Y.4
Danyluk, J.5
Sarhan, F.6
-
60
-
-
54149112601
-
Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions
-
Kim JS, Kim KA, Oh TR, Park CM, Kang H. Functional characterization of DEAD-box RNA helicases in Arabidopsis thaliana under abiotic stress conditions. Plant Cell Physiol. 2008;49:1563-71.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1563-1571
-
-
Kim, J.S.1
Kim, K.A.2
Oh, T.R.3
Park, C.M.4
Kang, H.5
-
61
-
-
84879369383
-
Role of CBFs as integrators of chloroplast redox, phytochrome and plant hormone signaling during cold acclimation
-
Kurepin LV, Dahal KP, Savitch LV, Singh J, Bode R, Ivanov AG, et al. Role of CBFs as integrators of chloroplast redox, phytochrome and plant hormone signaling during cold acclimation. Int J Mol Sci. 2013;14:12729-63.
-
(2013)
Int J Mol Sci
, vol.14
, pp. 12729-12763
-
-
Kurepin, L.V.1
Dahal, K.P.2
Savitch, L.V.3
Singh, J.4
Bode, R.5
Ivanov, A.G.6
-
62
-
-
77954030171
-
Cold stress and acclimation: what is important for metabolic adjustment?
-
Janska A, Marsik P, Zelenkova S, Ovesna J. Cold stress and acclimation: what is important for metabolic adjustment? Plant Biol (Stuttg). 2010;12:395-405.
-
(2010)
Plant Biol (Stuttg)
, vol.12
, pp. 395-405
-
-
Janska, A.1
Marsik, P.2
Zelenkova, S.3
Ovesna, J.4
-
63
-
-
34247345224
-
The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs
-
Badawi M, Danyluk J, Boucho B, Houde M, Sarhan F. The CBF gene family in hexaploid wheat and its relationship to the phylogenetic complexity of cereal CBFs. Mol Genet Genomics. 2007;277:533-54.
-
(2007)
Mol Genet Genomics
, vol.277
, pp. 533-554
-
-
Badawi, M.1
Danyluk, J.2
Boucho, B.3
Houde, M.4
Sarhan, F.5
-
64
-
-
78549269178
-
Reciprocal regulation among miR395, APS and SULTR2,1 in Arabidopsis thaliana
-
Liang G, Yu D. Reciprocal regulation among miR395, APS and SULTR2,1 in Arabidopsis thaliana. Plant Signal Behav. 2010;10:1257-9.
-
(2010)
Plant Signal Behav
, vol.10
, pp. 1257-1259
-
-
Liang, G.1
Yu, D.2
-
65
-
-
84871861940
-
Identification and characterization of microRNAs from wheat Triticum aestivum L. under phosphorus deprivation. J
-
Zhao X, Liu X, Guo C, Gu J, Kai X. Identification and characterization of microRNAs from wheat Triticum aestivum L. under phosphorus deprivation. J. Plant Biochem Biotechnol. 2013;22:113-23.
-
(2013)
Plant Biochem Biotechnol
, vol.22
, pp. 113-123
-
-
Zhao, X.1
Liu, X.2
Guo, C.3
Gu, J.4
Kai, X.5
-
66
-
-
84896137254
-
Effects of downregulation of microRNA-181a on H2O2-induced H9c2 cell apoptosis via the mitochondrial apoptotic pathway
-
Wang L, Huang H, Fan Y, Kong B, Hu H, Hu K, et al. Effects of downregulation of microRNA-181a on H2O2-induced H9c2 cell apoptosis via the mitochondrial apoptotic pathway. Oxid Med Cell Longev. 2014;2014:960362.
-
(2014)
Oxid Med Cell Longev
, vol.2014
, pp. 960362
-
-
Wang, L.1
Huang, H.2
Fan, Y.3
Kong, B.4
Hu, H.5
Hu, K.6
-
67
-
-
36048991514
-
Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like genes in wheat (Triticum aestivum L.)
-
Paolacci AR, Tanzarella OA, Porceddu E, Varotto S, Ciaffi M. Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like genes in wheat (Triticum aestivum L.). Mol Genet Genomics. 2007;278:689-708.
-
(2007)
Mol Genet Genomics
, vol.278
, pp. 689-708
-
-
Paolacci, A.R.1
Tanzarella, O.A.2
Porceddu, E.3
Varotto, S.4
Ciaffi, M.5
-
68
-
-
84860602170
-
On the complexity of miRNA-mediated regulation in plants: novel insights into the genomic organization of plant miRNAs
-
Colaiacovo M, Lamontanara A, Bernardo L, Alberici R, Crosatti C, Giusti L, et al. On the complexity of miRNA-mediated regulation in plants: novel insights into the genomic organization of plant miRNAs. Biol Direct. 2012;7:15.
-
(2012)
Biol Direct
, vol.7
, pp. 15
-
-
Colaiacovo, M.1
Lamontanara, A.2
Bernardo, L.3
Alberici, R.4
Crosatti, C.5
Giusti, L.6
-
69
-
-
84875902651
-
The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14
-
Guo S, Xu Y, Liu H, Mao Z, Zhang C, Ma Y, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun. 2013;4:1566.
-
(2013)
Nat Commun
, vol.4
, pp. 1566
-
-
Guo, S.1
Xu, Y.2
Liu, H.3
Mao, Z.4
Zhang, C.5
Ma, Y.6
-
71
-
-
0036920362
-
Early in short days 4, a mutation in Arabidopsis that causes early flowering and reduces the mRNA abundance of the floral repressor FLC
-
Reeves PH, Murtas G, Dash S, Coupland G. Early in short days 4, a mutation in Arabidopsis that causes early flowering and reduces the mRNA abundance of the floral repressor FLC. Development. 2002;129:5349-61.
-
(2002)
Development
, vol.129
, pp. 5349-5361
-
-
Reeves, P.H.1
Murtas, G.2
Dash, S.3
Coupland, G.4
-
72
-
-
0142028822
-
A nuclear protease required for flowering time regulation in Arabidopsis reduces the abundance of small ubiquitin-related modifier conjugates
-
Murtas G, Reeves PH, Fu Y-F, Bancroft I, Dean C, Coupland G. A nuclear protease required for flowering time regulation in Arabidopsis reduces the abundance of small ubiquitin-related modifier conjugates. Plant Cell. 2003;15:2308-19.
-
(2003)
Plant Cell
, vol.15
, pp. 2308-2319
-
-
Murtas, G.1
Reeves, P.H.2
Fu, Y.-F.3
Bancroft, I.4
Dean, C.5
Coupland, G.6
-
73
-
-
84877251148
-
Flowering time control in ornamental gloxinia (Sinningia speciosa)
-
Li X, Hongwu B, Dafeng S, Shengyun M, Ning H, Junhui W, et al. Flowering time control in ornamental gloxinia (Sinningia speciosa). Ann Bot. 2013;111:791-9.
-
(2013)
Ann Bot
, vol.111
, pp. 791-799
-
-
Li, X.1
Hongwu, B.2
Dafeng, S.3
Shengyun, M.4
Ning, H.5
Junhui, W.6
-
74
-
-
39549110203
-
MicroRNA detection by northern blotting using locked nucleic acid probes
-
Várallyay E, Burgyán J, Havelda Z. MicroRNA detection by northern blotting using locked nucleic acid probes. Nat Protoc. 2008;3:190-6.
-
(2008)
Nat Protoc
, vol.3
, pp. 190-196
-
-
Várallyay, E.1
Burgyán, J.2
Havelda, Z.3
-
75
-
-
78149432202
-
Ultra-deep sequencing reveals the microRNAs expression pattern of the human stomach
-
Ribeiro-dos-Santos Â, Khayat A, Silva A, Alencar D, Lobato J, Luz L, et al. Ultra-deep sequencing reveals the microRNAs expression pattern of the human stomach. PLoS One. 2010;5:e13205.
-
(2010)
PLoS One
, vol.5
, pp. e13205
-
-
Ribeiro-dos-Santos, Â1
Khayat, A.2
Silva, A.3
Alencar, D.4
Lobato, J.5
Luz, L.6
-
76
-
-
77955439834
-
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
-
Schulte J, Marschall T, Martin M, Rosenstie P, Mestdagh P, Schlierf S, et al. Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma. Nucleic Acids Res. 2010;38:5919-28.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5919-5928
-
-
Schulte, J.1
Marschall, T.2
Martin, M.3
Rosenstie, P.4
Mestdagh, P.5
Schlierf, S.6
-
77
-
-
56649108210
-
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomics applications
-
Ondov BD, Varadarajan A, Passalacqua KD, Bergman NH. Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomics applications. Bioinformatics. 2008;24:2776-7.
-
(2008)
Bioinformatics
, vol.24
, pp. 2776-2777
-
-
Ondov, B.D.1
Varadarajan, A.2
Passalacqua, K.D.3
Bergman, N.H.4
-
79
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 2005;110:462-7.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
80
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res. 2003;31:3429-31.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
81
-
-
84891818318
-
miRBase: annotating high confidence microRNAs using deep sequencing data
-
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2014;42:D68-73.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
82
-
-
0032979731
-
Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources
-
Kal AJ, Van Zonneveld AJ, Benes V, Vandenberg M, Koerkamp MG, Albermann K, et al. Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources. Mol Biol Cell. 1999;10:1859-72.
-
(1999)
Mol Biol Cell
, vol.10
, pp. 1859-1872
-
-
Kal, A.J.1
Zonneveld, A.J.2
Benes, V.3
Vandenberg, M.4
Koerkamp, M.G.5
Albermann, K.6
-
83
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc. 1995;85:289-300.
-
(1995)
J Roy Stat Soc
, vol.85
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
84
-
-
77954184918
-
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
-
Bonnet E, He Y, Billiau K, Vandepeer Y. TAPIR, a web server for the prediction of plant microRNA targets, including target mimics. Bioinformatics. 2010;26:1566-8.
-
(2010)
Bioinformatics
, vol.26
, pp. 1566-1568
-
-
Bonnet, E.1
He, Y.2
Billiau, K.3
Vandepeer, Y.4
-
85
-
-
70449356774
-
QuickGO: a web-based tool for Gene Ontology searching
-
Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, Apweiler R. QuickGO: a web-based tool for Gene Ontology searching. Bioinformatics. 2009;25:3045-6.
-
(2009)
Bioinformatics
, vol.25
, pp. 3045-3046
-
-
Binns, D.1
Dimmer, E.2
Huntley, R.3
Barrell, D.4
O'Donovan, C.5
Apweiler, R.6
|