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Volumn 87, Issue , 2015, Pages 43-50

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

Author keywords

Bacterial community; Deciduous forest; Decomposition; Forest soil; Litter; Seasonality

Indexed keywords

BACTERIA; DECOMPOSITION; ECOLOGY; ECOSYSTEMS; FORESTRY; MINERALS; NUTRIENTS; RNA;

EID: 84929469053     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2015.04.008     Document Type: Article
Times cited : (119)

References (54)
  • 3
    • 84871811486 scopus 로고    scopus 로고
    • Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change
    • Baldrian P., Šnajdr J., Merhautová V., Dobiášová P., Cajthaml T., Valášková V. Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change. Soil Biology and Biochemistry 2013, 56:60-68.
    • (2013) Soil Biology and Biochemistry , vol.56 , pp. 60-68
    • Baldrian, P.1    Šnajdr, J.2    Merhautová, V.3    Dobiášová, P.4    Cajthaml, T.5    Valášková, V.6
  • 5
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: impact of fungi on soil bacterial niche development
    • Boer W., Folman L.B., Summerbell R.C., Boddy L. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiology Reviews 2005, 29:795-811.
    • (2005) FEMS Microbiology Reviews , vol.29 , pp. 795-811
    • Boer, W.1    Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 6
    • 80053911875 scopus 로고    scopus 로고
    • Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada
    • Brockett B.F.T., Prescott C.E., Grayston S.J. Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada. Soil Biology and Biochemistry 2012, 44:9-20.
    • (2012) Soil Biology and Biochemistry , vol.44 , pp. 9-20
    • Brockett, B.F.T.1    Prescott, C.E.2    Grayston, S.J.3
  • 9
    • 80051667579 scopus 로고    scopus 로고
    • Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands
    • Collignon C., Uroz S., Turpault M.P., Frey-Klett P. Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands. Soil Biology and Biochemistry 2011, 43:2012-2022.
    • (2011) Soil Biology and Biochemistry , vol.43 , pp. 2012-2022
    • Collignon, C.1    Uroz, S.2    Turpault, M.P.3    Frey-Klett, P.4
  • 10
    • 49549107771 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
    • Dowd S.E., Callaway T.R., Wolcott R.D., Sun Y., McKeehan T., Hagevoort R.G., Edrington T.S. Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiology 2008, 8:125.
    • (2008) BMC Microbiology , vol.8 , pp. 125
    • Dowd, S.E.1    Callaway, T.R.2    Wolcott, R.D.3    Sun, Y.4    McKeehan, T.5    Hagevoort, R.G.6    Edrington, T.S.7
  • 11
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 13
    • 84860647701 scopus 로고    scopus 로고
    • Digging deeper to find unique microbial communities: the strong effect of depth on the structure of bacterial and archaeal communities in soil
    • Eilers K.G., Debenport S., Anderson S., Fierer N. Digging deeper to find unique microbial communities: the strong effect of depth on the structure of bacterial and archaeal communities in soil. Soil Biology and Biochemistry 2012, 50:58-65.
    • (2012) Soil Biology and Biochemistry , vol.50 , pp. 58-65
    • Eilers, K.G.1    Debenport, S.2    Anderson, S.3    Fierer, N.4
  • 14
    • 17744398633 scopus 로고    scopus 로고
    • Natural abundance of 13C in CO2 respired from forest soils reveals speed of link between tree photosynthesis and root respiration
    • Ekblad A., Högberg P. Natural abundance of 13C in CO2 respired from forest soils reveals speed of link between tree photosynthesis and root respiration. Oecologia 2001, 127:305-308.
    • (2001) Oecologia , vol.127 , pp. 305-308
    • Ekblad, A.1    Högberg, P.2
  • 15
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • Fierer N., Bradford M.A., Jackson R. Toward an ecological classification of soil bacteria. Ecology 2007, 88:1354-1364.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.3
  • 16
    • 34748886657 scopus 로고    scopus 로고
    • Past: paleontological statistics software package for education and data analysis
    • Hammer Ø., Harper D.A.T., Ryan P.D. Past: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 2001, 4:4-9.
    • (2001) Palaeontologia Electronica , vol.4 , pp. 4-9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.D.3
  • 19
    • 63349105158 scopus 로고    scopus 로고
    • Acomprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
    • Jones R.T., Robeson M.S., Lauber C.L., Hamady M., Knight R., Fierer N. Acomprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME Journal 2009, 3:442-453.
    • (2009) ISME Journal , vol.3 , pp. 442-453
    • Jones, R.T.1    Robeson, M.S.2    Lauber, C.L.3    Hamady, M.4    Knight, R.5    Fierer, N.6
  • 21
    • 47049112538 scopus 로고    scopus 로고
    • Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils
    • Koch I.H., Gich F., Dunfield P.F., Overmann J. Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils. International Journal of Systematic and Evolutionary Microbiology 2008, 58:1114-1122.
    • (2008) International Journal of Systematic and Evolutionary Microbiology , vol.58 , pp. 1114-1122
    • Koch, I.H.1    Gich, F.2    Dunfield, P.F.3    Overmann, J.4
  • 24
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 2009, 75:5111-5120.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 25
    • 33846253531 scopus 로고    scopus 로고
    • Relationships between temperature responses and bacterial community structure along seasonal and altitudinal gradients
    • Lipson D.A. Relationships between temperature responses and bacterial community structure along seasonal and altitudinal gradients. FEMS Microbiology Ecology 2007, 59:418-427.
    • (2007) FEMS Microbiology Ecology , vol.59 , pp. 418-427
    • Lipson, D.A.1
  • 27
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 2005, 71:8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 31
    • 0034547801 scopus 로고    scopus 로고
    • An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
    • Osborn A.M., Moore E.R.B., Timmis K.N. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology 2000, 2:39-50.
    • (2000) Environmental Microbiology , vol.2 , pp. 39-50
    • Osborn, A.M.1    Moore, E.R.B.2    Timmis, K.N.3
  • 32
    • 84870684041 scopus 로고    scopus 로고
    • Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands
    • Peralta R.M., Ahn C., Gillevet P.M. Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands. Science of the Total Environment 2013, 443:725-732.
    • (2013) Science of the Total Environment , vol.443 , pp. 725-732
    • Peralta, R.M.1    Ahn, C.2    Gillevet, P.M.3
  • 34
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder J., Knight R. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nature Methods 2010, 7:668-669.
    • (2010) Nature Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 36
    • 84865866018 scopus 로고    scopus 로고
    • Temperature adaptation of bacterial communities in experimentally warmed forest soils
    • Rousk J., Frey S.D., Bååth E. Temperature adaptation of bacterial communities in experimentally warmed forest soils. Global Change Biology 2012, 18:3252-3258.
    • (2012) Global Change Biology , vol.18 , pp. 3252-3258
    • Rousk, J.1    Frey, S.D.2    Bååth, E.3
  • 39
    • 0036344150 scopus 로고    scopus 로고
    • Allocation of extracellular enzymatic activity in relation to litter composition, N deposition, and mass loss
    • Sinsabaugh R.L., Carreiro M.M., Repert D.A. Allocation of extracellular enzymatic activity in relation to litter composition, N deposition, and mass loss. Biogeochemistry 2002, 1-24.
    • (2002) Biogeochemistry , pp. 1-24
    • Sinsabaugh, R.L.1    Carreiro, M.M.2    Repert, D.A.3
  • 40
    • 78650792449 scopus 로고    scopus 로고
    • Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition
    • Šnajdr J., Cajthaml T., Valášková V., Merhautová V., Petránková M., Spetz P., Leppänen K., Baldrian P. Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition. FEMS Microbiology Ecology 2011, 75:291-303.
    • (2011) FEMS Microbiology Ecology , vol.75 , pp. 291-303
    • Šnajdr, J.1    Cajthaml, T.2    Valášková, V.3    Merhautová, V.4    Petránková, M.5    Spetz, P.6    Leppänen, K.7    Baldrian, P.8
  • 41
    • 44449155456 scopus 로고    scopus 로고
    • Activity and spatial distribution of lignocellulose-degrading enzymes during forest soil colonization by saprotrophic basidiomycetes
    • Šnajdr J., Valášková V., Merhautová V., Cajthaml T., Baldrian P. Activity and spatial distribution of lignocellulose-degrading enzymes during forest soil colonization by saprotrophic basidiomycetes. Enzyme and Microbial Technology 2008, 43:186-192.
    • (2008) Enzyme and Microbial Technology , vol.43 , pp. 186-192
    • Šnajdr, J.1    Valášková, V.2    Merhautová, V.3    Cajthaml, T.4    Baldrian, P.5
  • 44
    • 84860692234 scopus 로고    scopus 로고
    • Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers
    • Štursová M., Zifcakova L., Leigh M.B., Burgess R., Baldrian P. Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers. FEMS Microbiology Ecology 2012, 80:735-746.
    • (2012) FEMS Microbiology Ecology , vol.80 , pp. 735-746
    • Štursová, M.1    Zifcakova, L.2    Leigh, M.B.3    Burgess, R.4    Baldrian, P.5
  • 45
    • 77954728195 scopus 로고    scopus 로고
    • Rhizomicrobium palustre gen. nov., sp. nov., a facultatively anaerobic, fermentative stalked bacterium in the class Alphaproteobacteria isolated from rice plant roots
    • Ueki A., Kodama Y., Kaku N., Shiromura T., Satoh A., Watanabe K., Ueki K. Rhizomicrobium palustre gen. nov., sp. nov., a facultatively anaerobic, fermentative stalked bacterium in the class Alphaproteobacteria isolated from rice plant roots. Journal of General and Applied Microbiology 2010, 56:193-203.
    • (2010) Journal of General and Applied Microbiology , vol.56 , pp. 193-203
    • Ueki, A.1    Kodama, Y.2    Kaku, N.3    Shiromura, T.4    Satoh, A.5    Watanabe, K.6    Ueki, K.7
  • 46
    • 77954695132 scopus 로고    scopus 로고
    • Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
    • Uroz S., Buee M., Murat C., Frey-Klett P., Martin F. Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environmental Microbiology Reports 2010, 2:281-288.
    • (2010) Environmental Microbiology Reports , vol.2 , pp. 281-288
    • Uroz, S.1    Buee, M.2    Murat, C.3    Frey-Klett, P.4    Martin, F.5
  • 47
    • 84880047986 scopus 로고    scopus 로고
    • Functional profiling and distribution of the forest soil bacterial communities along the soil mycorrhizosphere continuum
    • Uroz S., Courty P.E., Pierrat J.C., Peter M., Buee M., Turpault M.P., Garbaye J., Frey-Klett P. Functional profiling and distribution of the forest soil bacterial communities along the soil mycorrhizosphere continuum. Microbial Ecology 2013, 66:404-415.
    • (2013) Microbial Ecology , vol.66 , pp. 404-415
    • Uroz, S.1    Courty, P.E.2    Pierrat, J.C.3    Peter, M.4    Buee, M.5    Turpault, M.P.6    Garbaye, J.7    Frey-Klett, P.8
  • 49
    • 84874536596 scopus 로고    scopus 로고
    • The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
    • Větrovský T., Baldrian P. The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses. PLOS ONE 2013, 8:e57923.
    • (2013) PLOS ONE , vol.8 , pp. e57923
    • Větrovský, T.1    Baldrian, P.2
  • 50
    • 84875162399 scopus 로고    scopus 로고
    • Fungal community on decomposing leaf litter undergoes rapid successional changes
    • Voříšková J., Baldrian P. Fungal community on decomposing leaf litter undergoes rapid successional changes. ISME Journal 2013, 7:477-486.
    • (2013) ISME Journal , vol.7 , pp. 477-486
    • Voříšková, J.1    Baldrian, P.2
  • 51
    • 84888292879 scopus 로고    scopus 로고
    • Seasonal dynamics of fungal communities in a temperate oak forest soil
    • Voříšková J., Brabcová V., Cajthaml T., Baldrian P. Seasonal dynamics of fungal communities in a temperate oak forest soil. New Phytologist 2014, 201:269-278.
    • (2014) New Phytologist , vol.201 , pp. 269-278
    • Voříšková, J.1    Brabcová, V.2    Cajthaml, T.3    Baldrian, P.4
  • 53
    • 84871175572 scopus 로고    scopus 로고
    • Bacterial communities in soil mimic patterns of vegetative succession and ecosystem climax but are resilient to change between seasons
    • Williams M.A., Jangid K., Shanmugam S.G., Whitman W.B. Bacterial communities in soil mimic patterns of vegetative succession and ecosystem climax but are resilient to change between seasons. Soil Biology and Biochemistry 2013, 57:749-757.
    • (2013) Soil Biology and Biochemistry , vol.57 , pp. 749-757
    • Williams, M.A.1    Jangid, K.2    Shanmugam, S.G.3    Whitman, W.B.4
  • 54
    • 45149092660 scopus 로고    scopus 로고
    • Evaluation of terminal-restriction fragment length polymorphism analysis in contrasting marine environments
    • Zhang R., Thiyagarajan V., Qian P.Y. Evaluation of terminal-restriction fragment length polymorphism analysis in contrasting marine environments. FEMS Microbiology Ecology 2008, 65:169-178.
    • (2008) FEMS Microbiology Ecology , vol.65 , pp. 169-178
    • Zhang, R.1    Thiyagarajan, V.2    Qian, P.Y.3


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