메뉴 건너뛰기




Volumn 56, Issue 3, 2010, Pages 193-203

Rhizomicrobium palustre gen. nov., sp. nov., a facultatively anaerobic, fermentative stalked bacterium in the class Alphaproteobacteria isolated from rice plant roots

Author keywords

Alphaproteobacteria; Anaerobic gramnegative rods; Fe(III) reduction; Rhizomicrobium; Stalked bacterium

Indexed keywords

ACETIC ACID; ALCOHOL; FATTY ACID; GENOMIC DNA; GLUCOSE; HYDROGEN; IRON OXIDE; LACTIC ACID; RNA 16S; SODIUM CHLORIDE; SUGAR; UBIDECARENONE;

EID: 77954728195     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.56.193     Document Type: Article
Times cited : (35)

References (41)
  • 1
    • 0036865614 scopus 로고    scopus 로고
    • Phylogeny of Maricaulis Abraham et al. 1999 and proposal of Maricaulis virginensis sp. nov., M. parjimensis sp. nov., M. washingtonensis sp. nov. and M. salignorans sp. nov
    • Abraham, W.-R., Strömpl, C., Bennasar, A., Vancanneyt, M., Snauwaert, C., Swings, J., Smit, J., and Moore, E. R. B. (2002) Phylogeny of Maricaulis Abraham et al. 1999 and proposal of Maricaulis virginensis sp. nov., M. parjimensis sp. nov., M. washingtonensis sp. nov. and M. salignorans sp. nov. Int. J. Syst. Evol. Microbiol., 52, 2191-2201.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 2191-2201
    • Abraham, W.-R.1    Strömpl, C.2    Bennasar, A.3    Vancanneyt, M.4    Snauwaert, C.5    Swings, J.6    Smit, J.7    Moore, E.R.B.8
  • 2
    • 0032987957 scopus 로고    scopus 로고
    • Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter
    • Abraham, W.-R., Strömpl, C., Meyer, H., Lindholst, S., Moore, E. R. B., Christ, R., Vancanneyt, M., Tindall, B. J., Bennasar, A., Smit, J., and Tesar, M. (1999) Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. Int. J. Syst. Bacteriol., 49, 1053-1073.
    • (1999) Int. J. Syst. Bacteriol , vol.49 , pp. 1053-1073
    • Abraham, W.-R.1    Strömpl, C.2    Meyer, H.3    Lindholst, S.4    Moore, E.R.B.5    Christ, R.6    Vancanneyt, M.7    Tindall, B.J.8    Bennasar, A.9    Smit, J.10    Tesar, M.11
  • 4
    • 0037445309 scopus 로고    scopus 로고
    • Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol
    • Akasaka, H., Izawa, T., Ueki, K., and Ueki, A. (2003a) Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol. Ecol., 43, 149-161.
    • (2003) Ecol , vol.43 , pp. 149-161
    • Akasaka, H.1    Izawa, T.2    Ueki, K.3    Ueki, A.4
  • 5
    • 0344897060 scopus 로고    scopus 로고
    • Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionateproducing bacterium isolated from plant residue in irrigated ricefield soil
    • Akasaka, H., Ueki, A., Hanada, S., Kamagata, Y., and Ueki, K. (2003b) Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionateproducing bacterium isolated from plant residue in irrigated ricefield soil. Int. J. Syst. Evol. Microbiol., 53, 1991-1998.
    • (2003) Int. J. Syst. Evol. Microbiol , vol.53 , pp. 1991-1998
    • Akasaka, H.1    Ueki, A.2    Hanada, S.3    Kamagata, Y.4    Ueki, K.5
  • 8
    • 19544377549 scopus 로고    scopus 로고
    • Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: Implications for the taxonomy of the orders bRhodobacterales and Caulobacterales
    • Badger, J. H., Eisen, J. A., and Ward, N. L. (2005) Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: Implications for the taxonomy of the orders bRhodobacterales' and Caulobacterales. Int. J. Syst. Evol. Microbiol., 55, 1021-1026.
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 1021-1026
    • Badger, J.H.1    Eisen, J.A.2    Ward, N.L.3
  • 10
    • 0001778227 scopus 로고    scopus 로고
    • Biological formation and consumption of methane
    • ed. by Khalil, M. A. K., Springer, Berlin
    • Boone, R. D. (2000) Biological formation and consumption of methane. In Atmospheric Methane, ed. by Khalil, M. A. K., Springer, Berlin, pp. 42-62.
    • (2000) Atmospheric Methane , pp. 42-62
    • Boone, R.D.1
  • 11
    • 0042311188 scopus 로고    scopus 로고
    • Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria
    • Cho, J.-C. and Giovannoni, S. J. (2003) Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 53, 1031-1036.
    • (2003) Int. J. Syst. Evol. Microbiol , vol.53 , pp. 1031-1036
    • Cho, J.-C.1    Giovannoni, S.J.2
  • 12
    • 33646193540 scopus 로고    scopus 로고
    • Class I. Alphaproteobacteria class nov
    • ed. by Brenner, D. J., Krieg, N. R., Staley, J. T., and Garrity, G. M., Springer, New York
    • Garrity, G. M., Bell, J. A., and Lilburn, T. (2005) Class I. Alphaproteobacteria class nov. In Bergey's Manual of Systematic Bacteriology, Vol. 2, Part C, 2nd ed., ed. by Brenner, D. J., Krieg, N. R., Staley, J. T., and Garrity, G. M., Springer, New York, pp. 1-574.
    • (2005) Bergey's Manual of Systematic Bacteriology, Vol. 2, Part C, 2nd Ed , pp. 1-574
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 13
    • 39049145171 scopus 로고    scopus 로고
    • Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups
    • Gupta, R. S. and Mok, A. (2007) Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups. BMC Microbiol., 7, 106.
    • (2007) BMC Microbiol , vol.7 , pp. 106
    • Gupta, R.S.1    Mok, A.2
  • 14
    • 0031022026 scopus 로고    scopus 로고
    • Transfer of the bacteriochlorophyll b-containing phototrophic bacteria Rhodopseudomonas viridis and Rhodopseudomonas sulfoviridis to the genus Blastochloris gen. nov
    • Hiraishi, A. (1997) Transfer of the bacteriochlorophyll b-containing phototrophic bacteria Rhodopseudomonas viridis and Rhodopseudomonas sulfoviridis to the genus Blastochloris gen. nov. Int. J. Syst. Bacteriol., 47, 217-219.
    • (1997) Int. J. Syst. Bacteriol , vol.47 , pp. 217-219
    • Hiraishi, A.1
  • 16
    • 0034509027 scopus 로고    scopus 로고
    • Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil. Soil Biol
    • Kaku, N., Ueki, A., Fujii, H., and Ueki, K. (2000) Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil. Soil Biol. Biochem., 32, 2001-2010.
    • (2000) Biochem , vol.32 , pp. 2001-2010
    • Kaku, N.1    Ueki, A.2    Fujii, H.3    Ueki, K.4
  • 18
    • 52649165727 scopus 로고    scopus 로고
    • An electricity-generating prosthecate bacterium strain Mfc52 isolated from a microbial cell. FEMS Microbiol
    • Kodama, Y. and Watanabe, K. (2008) An electricity-generating prosthecate bacterium strain Mfc52 isolated from a microbial cell. FEMS Microbiol. Lett., 288, 55-61.
    • (2008) Lett , vol.288 , pp. 55-61
    • Kodama, Y.1    Watanabe, K.2
  • 19
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • Komagata, K. and Suzuki, K. (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol., 19, 161-207.
    • (1987) Methods Microbiol , vol.19 , pp. 161-207
    • Komagata, K.1    Suzuki, K.2
  • 20
    • 44449153992 scopus 로고    scopus 로고
    • Sneathiella glossodoripedis sp. nov., a marine alphaproteobacteria isolated from a nudibranch Glossodoris cincta, and proposal of Sneathiellales ord. nov. and Sneathiellaceae fam. nov
    • Kurahashi, M., Fukunaga, Y., Harayama, S., and Yokota, A. (2008) Sneathiella glossodoripedis sp. nov., a marine alphaproteobacteria isolated from a nudibranch Glossodoris cincta, and proposal of Sneathiellales ord. nov. and Sneathiellaceae fam. nov. Int. J. Syst. Evol. Microbiol., 58, 548-552.
    • (2008) Int. J. Syst. Evol. Microbiol , vol.58 , pp. 548-552
    • Kurahashi, M.1    Fukunaga, Y.2    Harayama, S.3    Yokota, A.4
  • 21
    • 26244431719 scopus 로고    scopus 로고
    • Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage (Kordiimonadales ord. nov.) in the bAlphaproteobacteria
    • Kwon, K. K., Lee, H.-S., Yang, S. H., and Kim S.-J. (2005) Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage (Kordiimonadales ord. nov.) in the bAlphaproteobacteria. Int. J. Syst. Evol. Microbiol., 55, 2033-2037.
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 2033-2037
    • Kwon, K.K.1    Lee, H.-S.2    Yang, S.H.3    Kim, S.-J.4
  • 22
    • 26444500123 scopus 로고    scopus 로고
    • The hierarchical system of the bAlphaproteobacteria: Description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov
    • Lee, K.-B., Liu, C.-T., Anzai, Y., Kim, H., Aono, T., and Oyaizu, H. (2005) The hierarchical system of the bAlphaproteobacteria: Description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov. Int. J. Syst. Evol. Microbiol., 55, 1907-1919.
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 1907-1919
    • Lee, K.-B.1    Liu, C.-T.2    Anzai, Y.3    Kim, H.4    Aono, T.5    Oyaizu, H.6
  • 23
    • 0019982011 scopus 로고
    • Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids
    • Miller, L. T. (1982) Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J. Clin. Microbiol., 16, 584-586.
    • (1982) J. Clin. Microbiol , vol.16 , pp. 584-586
    • Miller, L.T.1
  • 24
    • 0018423505 scopus 로고
    • Cellular fatty acid composition in Gram negative obligately anaerobic rods
    • Miyagawa, E., Azuma, R., and Suto, E. (1979) Cellular fatty acid composition in Gram negative obligately anaerobic rods. J. Gen. Appl. Microbiol., 25, 41-51.
    • (1979) J. Gen. Appl. Microbiol , vol.25 , pp. 41-51
    • Miyagawa, E.1    Azuma, R.2    Suto, E.3
  • 25
    • 0028230078 scopus 로고
    • Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli
    • Moore, L. V. H., Bourne, D. M., and Moore, W. E. C. (1994) Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli. Int. J. Syst. Bacteriol., 44, 338-347.
    • (1994) Int. J. Syst. Bacteriol , vol.44 , pp. 338-347
    • Moore, L.V.H.1    Bourne, D.M.2    Moore, W.E.C.3
  • 26
    • 70350694180 scopus 로고    scopus 로고
    • Rhodoplanes serenus sp. nov., a purple non-sulfur bacterium isolated from pond water
    • Okamura, K., Kanbe, T., and Hiraishi A. (2009) Rhodoplanes serenus sp. nov., a purple non-sulfur bacterium isolated from pond water. Int. J. Syst. Evol. Microbiol., 59, 1907-1919.
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 1907-1919
    • Okamura, K.1    Kanbe, T.2    Hiraishi, A.3
  • 27
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W. R. and Lipman, D. J. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0036824149 scopus 로고    scopus 로고
    • Physiological properties and phylogenetic affiliations of anaerobic bacteria isolated from roots of rice plants cultivated on a paddy field
    • Satoh, A., Watanabe, M., Ueki, A., and Ueki, K. (2002) Physiological properties and phylogenetic affiliations of anaerobic bacteria isolated from roots of rice plants cultivated on a paddy field. Anaerobe, 8, 233-246.
    • (2002) Anaerobe , vol.8 , pp. 233-246
    • Satoh, A.1    Watanabe, M.2    Ueki, A.3    Ueki, K.4
  • 31
    • 33847670407 scopus 로고
    • Ferrozine A new spectrophotometric reagent for iron
    • Stookey, L. L. (1970) Ferrozine A new spectrophotometric reagent for iron. Anal. Chem., 42, 779-781.
    • (1970) Anal. Chem , vol.42 , pp. 779-781
    • Stookey, L.L.1
  • 32
    • 0344465306 scopus 로고    scopus 로고
    • Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech
    • Strömpl, C., Hold, G. L., Lünsdorf, H., Graham, J., Gallacher, S., Abraham, W.-R., Moore, E. R. B., and Timmis, K. N. (2003) Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech. Int. J. Syst. Evol. Microbiol., 53, 1901-1906.
    • (2003) Int. J. Syst. Evol. Microbiol , vol.53 , pp. 1901-1906
    • Strömpl, C.1    Hold, G.L.2    Lünsdorf, H.3    Graham, J.4    Gallacher, S.5    Abraham, W.-R.6    Moore, E.R.B.7    Timmis, K.N.8
  • 33
    • 67649200497 scopus 로고    scopus 로고
    • Desulfovibrio portus sp. nov., a novel sulfate-reducing bacterium in the class Deltaproteobacteria isolated from an estuarine sediment
    • Suzuki, D., Ueki, A., Amaishi, A., and Ueki, K. (2009) Desulfovibrio portus sp. nov., a novel sulfate-reducing bacterium in the class Deltaproteobacteria isolated from an estuarine sediment. J. Gen. Appl. Microbiol., 55, 125-133.
    • (2009) J. Gen. Appl. Microbiol , vol.55 , pp. 125-133
    • Suzuki, D.1    Ueki, A.2    Amaishi, A.3    Ueki, K.4
  • 34
    • 7844248080 scopus 로고
    • The mechanism of methane fermentation in flooded paddy soil. Soil Sci
    • Takai, Y. (1970) The mechanism of methane fermentation in flooded paddy soil. Soil Sci. Plant Nutr., 6, 238-244.
    • (1970) Plant Nutr , vol.6 , pp. 238-244
    • Takai, Y.1
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 34548147748 scopus 로고    scopus 로고
    • Prevotella paludivivens sp. nov., a novel strictly-anaerobic, Gram-negative, hemicellulose-decomposing bacterium isolated from plant residue and rice roots in irrigated ricefield soil
    • Ueki, A., Akasaka, H., Satoh, A., Suzuki, D., and Ueki, K. (2007) Prevotella paludivivens sp. nov., a novel strictly-anaerobic, Gram-negative, hemicellulose-decomposing bacterium isolated from plant residue and rice roots in irrigated ricefield soil. Int. J. Syst. Evol. Microbiol., 57, 1803-1809.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 1803-1809
    • Ueki, A.1    Akasaka, H.2    Satoh, A.3    Suzuki, D.4    Ueki, K.5
  • 37
    • 31144439293 scopus 로고    scopus 로고
    • Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan
    • Ueki, A., Akasaka, H., Suzuki, D., and Ueki, K. (2006) Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. Int. J. Syst. Evol. Microbiol., 56, 39-44.
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 39-44
    • Ueki, A.1    Akasaka, H.2    Suzuki, D.3    Ueki, K.4
  • 38
    • 0033920356 scopus 로고    scopus 로고
    • Seasonal variations in vertical distribution of methanogenic activity and Fe(II) content and relationship between them in wetland rice field soil. Soil Sci
    • Ueki, A., Kainuma, Y., Fujii, H., and Ueki, K. (2000) Seasonal variations in vertical distribution of methanogenic activity and Fe(II) content and relationship between them in wetland rice field soil. Soil Sci. Plant Nutr., 46, 401-415.
    • (2000) Plant Nutr , vol.46 , pp. 401-415
    • Ueki, A.1    Kainuma, Y.2    Fujii, H.3    Ueki, K.4
  • 39
    • 0013190054 scopus 로고
    • Sulfate reduction in the anaerobic digestion of animal waste
    • Ueki, A., Matsuda, K., and Ohtsuki, C. (1986) Sulfate reduction in the anaerobic digestion of animal waste. J. Gen. Appl. Microbiol., 32, 111-123.
    • (1986) J. Gen. Appl. Microbiol , vol.32 , pp. 111-123
    • Ueki, A.1    Matsuda, K.2    Ohtsuki, C.3
  • 41
    • 34347390665 scopus 로고    scopus 로고
    • A robust species tree for the Alphaproteobacteria
    • Williams, K. P., Sobral, B. W., and Dickerman, A. W. (2007) A robust species tree for the Alphaproteobacteria. J. Bacteriol., 189, 4578-4586.
    • (2007) J. Bacteriol , vol.189 , pp. 4578-4586
    • Williams, K.P.1    Sobral, B.W.2    Dickerman, A.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.