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Volumn 28, Issue 3, 2015, Pages 283-287

A tale of two approaches: How metagenomics and proteomics are shaping the future of encephalitis diagnostics

Author keywords

16S rRNA; encephalitis; metagenomics; next generation sequencing; parallel analysis of translated open reading frame; phage immunoprecipitation sequencing; proteomics

Indexed keywords

AUTOANTIBODY;

EID: 84929466807     PISSN: 13507540     EISSN: 14736551     Source Type: Journal    
DOI: 10.1097/WCO.0000000000000198     Document Type: Review
Times cited : (32)

References (23)
  • 1
    • 84895767674 scopus 로고    scopus 로고
    • Burden of encephalitis-associated hospitalizations in the United States 1998-2010
    • Vora NM, Holman RC, Mehal JM, et al. Burden of encephalitis-associated hospitalizations in the United States, 1998-2010. Neurology 2014; 82:443-451.
    • (2014) Neurology , vol.82 , pp. 443-451
    • Vora, N.M.1    Holman, R.C.2    Mehal, J.M.3
  • 2
    • 0023850178 scopus 로고
    • Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
    • Saiki RK, Gelfand DH, Stoffel S, et al. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 1988; 239:487-491.
    • (1988) Science , vol.239 , pp. 487-491
    • Saiki, R.K.1    Gelfand, D.H.2    Stoffel, S.3
  • 3
    • 0022645112 scopus 로고
    • Vidarabine versus acyclovir therapy in herpes simplex encephalitis
    • Whitley RJ, Alford CA, Hirsch MS, et al. Vidarabine versus acyclovir therapy in herpes simplex encephalitis. N Engl J Med 1986; 314:144-149.
    • (1986) N Engl J Med , vol.314 , pp. 144-149
    • Whitley, R.J.1    Alford, C.A.2    Hirsch, M.S.3
  • 4
    • 84858117151 scopus 로고    scopus 로고
    • The frequency of autoimmune N-methyl-D-aspartate receptor encephalitis surpasses that of individual viral etiologies in young individuals enrolled in the California Encephalitis Project
    • Gable MS, Sheriff H, Dalmau J, et al. The frequency of autoimmune N-methyl-D-aspartate receptor encephalitis surpasses that of individual viral etiologies in young individuals enrolled in the California Encephalitis Project. Clin Infect Dis 2012; 54:899-904.
    • (2012) Clin Infect Dis , vol.54 , pp. 899-904
    • Gable, M.S.1    Sheriff, H.2    Dalmau, J.3
  • 5
    • 1242336853 scopus 로고    scopus 로고
    • Prospective study of use of PCR amplification and sequencing of 16S ribosomal DNA from cerebrospinal fluid for diagnosis of bacterial meningitis in a clinical setting
    • Schuurman T, de Boer RF, Kooistra-Smid AM, van Zwet AA. Prospective study of use of PCR amplification and sequencing of 16S ribosomal DNA from cerebrospinal fluid for diagnosis of bacterial meningitis in a clinical setting. J Clin Microbiol 2004; 42:734-740.
    • (2004) J Clin Microbiol , vol.42 , pp. 734-740
    • Schuurman, T.1    De Boer, R.F.2    Kooistra-Smid, A.M.3    Van Zwet, A.A.4
  • 6
    • 84882687925 scopus 로고    scopus 로고
    • Use of staged molecular analysis to determine causes of unexplained central nervous system infections
    • Hsu CC, Tokarz R, Briese T, et al. Use of staged molecular analysis to determine causes of unexplained central nervous system infections. Emerg Infect Dis 2013; 19:1470-1477.
    • (2013) Emerg Infect Dis , vol.19 , pp. 1470-1477
    • Hsu, C.C.1    Tokarz, R.2    Briese, T.3
  • 7
    • 80054778674 scopus 로고    scopus 로고
    • FilmArray, an automated nested multiplex PCR system for multipathogen detection: Development and application to respiratory tract infection
    • Poritz MA, Blaschke AJ, Byington CL, et al. FilmArray, an automated nested multiplex PCR system for multipathogen detection: development and application to respiratory tract infection. PLoS One 2011; 6:e26047.
    • (2011) PLoS One , vol.6 , pp. e26047
    • Poritz, M.A.1    Blaschke, A.J.2    Byington, C.L.3
  • 8
    • 84893206783 scopus 로고    scopus 로고
    • Comparison of three nextgeneration sequencing platforms for metagenomic sequencing and identification of pathogens in blood
    • Frey KG, Herrera-Galeano JE, Redden CL, et al. Comparison of three nextgeneration sequencing platforms for metagenomic sequencing and identification of pathogens in blood. BMC Genom 2014; 15:96.
    • (2014) BMC Genom , vol.15 , pp. 96
    • Frey, K.G.1    Herrera-Galeano, J.E.2    Redden, C.L.3
  • 9
    • 84904255806 scopus 로고    scopus 로고
    • A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from nextgeneration sequencing of clinical samples
    • Naccache SN, Federman S, Veeraraghavan N, et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from nextgeneration sequencing of clinical samples. Genome Res 2014; 24:1180-1192.
    • (2014) Genome Res , vol.24 , pp. 1180-1192
    • Naccache, S.N.1    Federman, S.2    Veeraraghavan, N.3
  • 10
    • 84865704283 scopus 로고    scopus 로고
    • Identification, characterization, and in vitro culture of highly divergent arena viruses from boa constrictors and annulated tree boas: Candidate etiological agents for snake inclusion body disease
    • Stenglein MD, Sanders C, Kistler AL, et al. Identification, characterization, and in vitro culture of highly divergent arena viruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease. MBio 2012; 3:e00180-12.
    • (2012) MBio , vol.3 , pp. e00180-e00212
    • Stenglein, M.D.1    Sanders, C.2    Kistler, A.L.3
  • 11
    • 68549121126 scopus 로고    scopus 로고
    • Emerging viral infections of the central nervous system: Part 1
    • Tyler KL. Emerging viral infections of the central nervous system: part 1. Arch Neurol 2009; 66:939-948.
    • (2009) Arch Neurol , vol.66 , pp. 939-948
    • Tyler, K.L.1
  • 12
    • 84899410903 scopus 로고    scopus 로고
    • Deep sequencing to identify the causes of viral encephalitis
    • Chan BK, Wilson T, Fischer KF, Kriesel JD. Deep sequencing to identify the causes of viral encephalitis. PLoS One 2014; 9:e93993.
    • (2014) PLoS One , vol.9 , pp. e93993
    • Chan, B.K.1    Wilson, T.2    Fischer, K.F.3    Kriesel, J.D.4
  • 13
    • 84902602767 scopus 로고    scopus 로고
    • Actionable diagnosis of neuroleptospirosis by next-generation sequencing
    • Wilson MR, Naccache SN, Samayoa E, et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. N Engl J Med 2014; 370:2408-2417.
    • (2014) N Engl J Med , vol.370 , pp. 2408-2417
    • Wilson, M.R.1    Naccache, S.N.2    Samayoa, E.3
  • 14
    • 77952738982 scopus 로고    scopus 로고
    • Astrovirus encephalitis in boy with Xlinked agammaglobulinemia
    • Quan PL, Wagner TA, Briese T, et al. Astrovirus encephalitis in boy with Xlinked agammaglobulinemia. Emerg Infect Dis 2010; 16:918-925.
    • (2010) Emerg Infect Dis , vol.16 , pp. 918-925
    • Quan, P.L.1    Wagner, T.A.2    Briese, T.3
  • 15
    • 84929461429 scopus 로고    scopus 로고
    • Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing
    • Naccache SN, Peggs KS, Mattes FM, et al. Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing. Clin Infect Dis 2015; 60:919-923.
    • (2015) Clin Infect Dis , vol.60 , pp. 919-923
    • Naccache, S.N.1    Peggs, K.S.2    Mattes, F.M.3
  • 16
    • 84929471931 scopus 로고    scopus 로고
    • Astrovirus VA1/HMO-C: An increasingly recognized neurotropic pathogen in immunocompromised patients
    • Brown JR, Morfopoulou S, Hubb J, et al. Astrovirus VA1/HMO-C: an increasingly recognized neurotropic pathogen in immunocompromised patients. Clin Infect Dis 2015; 60:881-888.
    • (2015) Clin Infect Dis , vol.60 , pp. 881-888
    • Brown, J.R.1    Morfopoulou, S.2    Hubb, J.3
  • 17
    • 84886301115 scopus 로고    scopus 로고
    • The perils of pathogen discovery: Origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns
    • Naccache SN, Greninger AL, Lee D, et al. The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. J Virol 2013; 87:11966-11977.
    • (2013) J Virol , vol.87 , pp. 11966-11977
    • Naccache, S.N.1    Greninger, A.L.2    Lee, D.3
  • 18
    • 0030060689 scopus 로고    scopus 로고
    • Sequence-based identification of microbial pathogens: A reconsideration of Koch's postulates
    • Fredricks DN, Relman DA. Sequence-based identification of microbial pathogens: a reconsideration of Koch's postulates. Clin Microbiol Rev 1996; 9:18-33.
    • (1996) Clin Microbiol Rev , vol.9 , pp. 18-33
    • Fredricks, D.N.1    Relman, D.A.2
  • 19
    • 2942534620 scopus 로고    scopus 로고
    • Phage display of cDNA libraries: Enrichment of cDNA expression using open reading frame selection
    • 1024, 1026-1029
    • Faix PH, Burg MA, Gonzales M, et al. Phage display of cDNA libraries: enrichment of cDNA expression using open reading frame selection. Biotechniques 2004; 36:1018-1022; 1024, 1026-1029.
    • (2004) Biotechniques , vol.36 , pp. 1018-1022
    • Faix, P.H.1    Burg, M.A.2    Gonzales, M.3
  • 20
    • 0037677572 scopus 로고    scopus 로고
    • Paraneoplastic cerebellar degeneration associated with antineuronal antibodies: Analysis of 50 patients
    • Shams'ili S, Grefkens J, de Leeuw B, et al. Paraneoplastic cerebellar degeneration associated with antineuronal antibodies: analysis of 50 patients. Brain 2003; 126:1409-1418.
    • (2003) Brain , vol.126 , pp. 1409-1418
    • Shams'Ili, S.1    Grefkens, J.2    De Leeuw, B.3
  • 21
    • 79958148950 scopus 로고    scopus 로고
    • Autoantigen discovery with a synthetic human peptidome
    • Larman HB, Zhao Z, Laserson U, et al. Autoantigen discovery with a synthetic human peptidome. Nat Biotechnol 2011; 29:535-541.
    • (2011) Nat Biotechnol , vol.29 , pp. 535-541
    • Larman, H.B.1    Zhao, Z.2    Laserson, U.3
  • 22
    • 84877307169 scopus 로고    scopus 로고
    • Protein interaction discovery using parallel analysis of translated ORFs (PLATO)
    • Zhu J, Larman HB, Gao G, et al. Protein interaction discovery using parallel analysis of translated ORFs (PLATO). Nat Biotechnol 2013; 31:331-334.
    • (2013) Nat Biotechnol , vol.31 , pp. 331-334
    • Zhu, J.1    Larman, H.B.2    Gao, G.3
  • 23
    • 0035798541 scopus 로고    scopus 로고
    • Spring, a novel RING finger protein that regulates synaptic vesicle exocytosis
    • Li Y, Chin LS, Weigel C, Li L. Spring, a novel RING finger protein that regulates synaptic vesicle exocytosis. J Biol Chem 2001; 276:40824-40833.
    • (2001) J Biol Chem , vol.276 , pp. 40824-40833
    • Li, Y.1    Chin, L.S.2    Weigel, C.3    Li, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.