Phage display of cDNA libraries: Enrichment of cDNA expression using open reading frame selection

BioTechniques

Volumn 36, Issue 6, 2004, Pages 1018-1029

  Faix, Peggy Ho ^a   Burg, Michael A ^a   Gonzales, Michelle ^a   Ravey, Edward P ^a   Baird, Andrew ^b   Larocca, David ^a  

^a Selective Genetics Inc   (United States)

^b KING'S COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPHAGES; CELLS; DNA; GENES; POLYPEPTIDES; PROTEINS;

MOLECULAR TARGETS; OPEN READING FRAMES (ORF); ORGAN VASCULATURE; PHAGE DISPLAYS;

CLONING;

AMPICILLIN; COMPLEMENTARY DNA; DNA FRAGMENT; HYBRID PROTEIN;

ARTICLE; DEVICE; DNA LIBRARY; GENOMICS; HUMAN; IMMUNOBLOTTING; LIGAND BINDING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHAGE DISPLAY; PLASMID; POLYMERASE CHAIN REACTION; PROTEIN EXPRESSION; WESTERN BLOTTING;

UNIDENTIFIED BACTERIOPHAGE;

EID: 2942534620     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/04366rr03     Document Type: Article

References (31)

1. Larocca, D. and A. Baird. 2001. Receptor-mediated gene transfer by phage-display vectors: applications in functional genomics and gene therapy. Drug Discov. Today 6:793-801.
2. Brown, K.C. 2000. New approaches for cell-specific targeting: identification of cell-selective peptides from combinatorial libraries. Curr. Opin. Chem. Biol. 4:16-21.
3. Pasqualini, R. 1999. Vascular targeting with phage peptide libraries. Q. J. Nucl. Med. 43:159-162.
4. Smith, G.P. and V.A. Petrenko. 1997. Phage display. Chemical Reviews 97:391-410.
5. Sidhu, S.S., H.B. Lowman, B.C. Cunningham, and J.A. Wells. 2000. Phage display for selection of novel binding peptides. Methods Enzymol. 328:333-363.
6. Jespers, L.S., J.H. Messens, A. De Keyser, D. Eeckhout, I. Van den Brande, Y.G. Gansemans, M.J. Lauwereys, G.P. Vlasuk, et al. 1995. Surface expression and ligand-based selection of cDNAs fused to filamentous phage gene VI. Biotechnology (NY) 13:378-382.
7. Hufton, S.E., P.T. Moerkerk, E.V. Meulemans, A. de Bruine, J.W. Arends, and H.R. Hoogenboom. 1999. Phage display of cDNA repertoires: the pVI display system and its applications for the selection of immunogenic ligands. J. Immunol. Methods 231:39-51.
8. Crameri, R., R. Jaussi, G. Menz, and K. Blaser. 1994. Display of expression products of cDNA libraries on phage surfaces. A versatile screening system for selective isolation of genes by specific gene-product/ligand interaction. Eur. J. Biochem. 226:53-58.
9. Crameri, R., S. Hemmann, and K. Blaser. 1996. PJuFo: a phagemid for display of cDNA libraries on phage surface suitable for selective isolation of clones expressing allergens. Adv. Exp. Med. Biol. 409:103-110.
10. Cochrane, D., C. Webster, G. Masih, and J. McCafferty. 2000. Identification of natural ligands for SH2 domains from a phage display cDNA library. J. Mol. Biol. 297:89-97.
11. Butteroni, C., M. De Felici, H.R. Scholer, and M. Pesce. 2000. Phage display screening reveals an association between germline-specific transcription factor oct-4 and multiple cellular proteins. J. Mol. Biol. 304:529-540.
12. Redl, B., P. Merschak, B. Abt, and P. Wojnar. 1999. Phage display reveals a novel interaction of human tear lipocalin and thioredoxin which is relevant for ligand binding. FEBS Lett. 460:182-186.
13. Santi, E., S. Capone, C. Mennuni, A. Lahm, A. Tramontano, A. Luzzago, and A. Nicosia. 2000. Bacteriophage lambda display of complex cDNA libraries: a new approach to functional genomics. J. Mol. Biol. 296:497-508.
14. Carcamo, J., M.W. Ravena, R. Brissette, O. Dedova, J.R. Beasley, A. Alam-Moghe, C. Wan, A. Blume et al. 1998. Unexpected frame-shifts from gene to expressed protein in a phage-displayed peptide library. Proc. Natl. Acad. Sci. USA 95:11146-11151.
15. Kassner, P.D., M.A. Burg, A. Baird, and D. Larocca. 1999. Genetic selection of phage engineered for receptor-mediated gene transfer to mammalian cells. Biochem. Biophys. Res. Commun. 264:921-928.
16. Legendre, D. and J. Fastrez. 2002. Construction and exploitation in model experiments of functional selection of a landscape library expressed from a phagemid. Gene 290:203-215.
17. Becerril, B., M.A. Poul, and J.D. Marks. 1999. Toward selection of internalizing antibodies from phage libraries. Biochem. Biophys. Res. Commun. 255:386-393.
18. Larocca, D., K. Jensen-Pergakes, M. Burg, and A. Baird. 2001. Receptor-targeted gene delivery using multivalent phagemid particles. Mol. Ther. 3:476-484.
19. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular Cloning: A Laboratory manual. CSH Laboratory Press, Cold Spring Harbor, NY.
20. Kay, B.K., J. Winter, and J. McCafferty. 1996. Phage Display of Peptides and Proteins: A Laboratory Manual. Academic Press, San Diego, CA.
21. Rakonjac, J., G. Jovanovic, and P. Model. 1997. Filamentous phage infection-mediated gene expression: construction and propagation of the gIII deletion mutant helper phage R408d3. Gene 198:99-103.
22. Larocca, D., P. Kassner, A. Witte, R. Ladner, G.F. Pierce, and A. Baird. 1999. Gene transfer to mammalian cells using genetically targeted filamentous bacteriophage. FASEB J. 13:727-734.
23. Rakonjac, J. and P. Model. 1998. Roles of pIII in filamentous phage assembly. J. Mol. Biol. 282:25-41.
24. Rakonjac, J., J. Feng, and P. Model. 1999. Filamentous phage are released from the bacterial membrane by a two-step mechanism involving a short C-terminal fragment of pIII. J. Mol. Biol. 289:1253-1265.
25. Beekwilder, J., J. Rakonjac, M. Jongsma, and D. Bosch. 1999. A phagemid vector using the E. coli phage shock promoter facilitates phage display of toxic proteins. Gene 228:23-31.
26. Huang, W., M. McKevitt and T. Palzkill. 2000. Use of the arabinose p(bad) promoter for tightly regulated display of proteins on bacteriophage. Gene 251:187-197.
27. Goldman, E., M. Korus, and W. Mandecki. 2000. Efficiencies of translation in three reading frames of unusual non-ORF sequences isolated from phage display. FASEB J. 14:603-611.
28. Holz, C., A. Lueking, L. Bovekamp, C. Gutjahr, N. Bolotina, H. Lehrach, and D.J. Cahill. 2001. A human cDNA expression library in yeast enriched for open reading frames. Genome Res. 11:1730-1735.
29. Rombel, I.T., K.F. Sykes, S. Rayner, and S.A. Johnston. 2002. ORF-FINDER: a vector for high-throughput gene identification. Gene 282:33-41.
30. Zacchi, P., D. Sblattero, F. Florian, R. Marzari, and A.R. Bradbury. 2003. Selecting open reading frames from DNA. Genome Res. 13:980-990.
31. Burg, M.A., E.P. Ravey, M. Gonzalez, A. Amburn, P.H. Faix, A. Baird, and D. Larocca. Selection of internalizing ligand display phage using rolling circle amplification for phage recovery. DNA Cell Biol. (In press).