-
1
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation, Nature reviews
-
[1] Jackson, R.J., Hellen, C.U., Pestova, T.V., The mechanism of eukaryotic translation initiation and principles of its regulation, Nature reviews. Mol. Cell Biol. 11 (2010), 113–127.
-
(2010)
Mol. Cell Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
2
-
-
64749099749
-
Role of 5′- and 3′-untranslated regions of mRNAs in human diseases
-
[2] Chatterjee, S., Pal, J.K., Role of 5′- and 3′-untranslated regions of mRNAs in human diseases. Biol. Cell /Eur. Cell. Biol. Org. 101 (2009), 251–262.
-
(2009)
Biol. Cell /Eur. Cell. Biol. Org.
, vol.101
, pp. 251-262
-
-
Chatterjee, S.1
Pal, J.K.2
-
3
-
-
79953052296
-
mRNA helicases: the tacticians of translational control, Nature reviews
-
[3] Parsyan, A., Svitkin, Y., Shahbazian, D., Gkogkas, C., Lasko, P., Merrick, W.C., Sonenberg, N., mRNA helicases: the tacticians of translational control, Nature reviews. Mol. Cell Biol. 12 (2011), 235–245.
-
(2011)
Mol. Cell Biol.
, vol.12
, pp. 235-245
-
-
Parsyan, A.1
Svitkin, Y.2
Shahbazian, D.3
Gkogkas, C.4
Lasko, P.5
Merrick, W.C.6
Sonenberg, N.7
-
4
-
-
12344281782
-
The implications of structured 5′ untranslated regions on translation and disease
-
[4] Pickering, B.M., Willis, A.E., The implications of structured 5′ untranslated regions on translation and disease. Semin. Cell Dev. Biol. 16 (2005), 39–47.
-
(2005)
Semin. Cell Dev. Biol.
, vol.16
, pp. 39-47
-
-
Pickering, B.M.1
Willis, A.E.2
-
5
-
-
80051989609
-
Understanding the transcriptome through RNA structure, Nature reviews
-
[5] Wan, Y., Kertesz, M., Spitale, R.C., Segal, E., Chang, H.Y., Understanding the transcriptome through RNA structure, Nature reviews. Genetics 12 (2011), 641–655.
-
(2011)
Genetics
, vol.12
, pp. 641-655
-
-
Wan, Y.1
Kertesz, M.2
Spitale, R.C.3
Segal, E.4
Chang, H.Y.5
-
6
-
-
84890958553
-
Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells
-
[6] Biffi, G., Di Antonio, M., Tannahill, D., Balasubramanian, S., Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells. Nat. Chem. 6 (2014), 75–80.
-
(2014)
Nat. Chem.
, vol.6
, pp. 75-80
-
-
Biffi, G.1
Di Antonio, M.2
Tannahill, D.3
Balasubramanian, S.4
-
7
-
-
84862229118
-
5′-UTR RNA G-quadruplexes: translation regulation and targeting
-
[7] Bugaut, A., Balasubramanian, S., 5′-UTR RNA G-quadruplexes: translation regulation and targeting. Nucleic Acids Res. 40 (2012), 4727–4741.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4727-4741
-
-
Bugaut, A.1
Balasubramanian, S.2
-
8
-
-
84860188058
-
RNA G-quadruplexes: G-quadruplexes with “U” turns
-
[8] Agarwal, T., Jayaraj, G., Pandey, S.P., Agarwala, P., Maiti, S., RNA G-quadruplexes: G-quadruplexes with “U” turns. Curr. Pharm. Des. 18 (2012), 2102–2111.
-
(2012)
Curr. Pharm. Des.
, vol.18
, pp. 2102-2111
-
-
Agarwal, T.1
Jayaraj, G.2
Pandey, S.P.3
Agarwala, P.4
Maiti, S.5
-
9
-
-
84867622361
-
G-quadruplexes in RNA biology, Wiley interdisciplinary reviews
-
[9] Millevoi, S., Moine, H., Vagner, S., G-quadruplexes in RNA biology, Wiley interdisciplinary reviews. RNA 3 (2012), 495–507.
-
(2012)
RNA
, vol.3
, pp. 495-507
-
-
Millevoi, S.1
Moine, H.2
Vagner, S.3
-
10
-
-
84877689596
-
Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability
-
[10] Endoh, T., Kawasaki, Y., Sugimoto, N., Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability. Angew. Chem. Int. Ed. Engl. 52 (2013), 5522–5526.
-
(2013)
Angew. Chem. Int. Ed. Engl.
, vol.52
, pp. 5522-5526
-
-
Endoh, T.1
Kawasaki, Y.2
Sugimoto, N.3
-
11
-
-
33947310727
-
An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation
-
[11] Kumari, S., Bugaut, A., Huppert, J.L., Balasubramanian, S., An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation. Nat. Chem. Biol. 3 (2007), 218–221.
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 218-221
-
-
Kumari, S.1
Bugaut, A.2
Huppert, J.L.3
Balasubramanian, S.4
-
12
-
-
45749139174
-
Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
-
[12] Arora, A., Dutkiewicz, M., Scaria, V., Hariharan, M., Maiti, S., Kurreck, J., Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif. RNA 14 (2008), 1290–1296.
-
(2008)
RNA
, vol.14
, pp. 1290-1296
-
-
Arora, A.1
Dutkiewicz, M.2
Scaria, V.3
Hariharan, M.4
Maiti, S.5
Kurreck, J.6
-
13
-
-
67049134254
-
An unusually stable G-quadruplex within the 5′-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells
-
[13] Morris, M.J., Basu, S., An unusually stable G-quadruplex within the 5′-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells. Biochemistry 48 (2009), 5313–5319.
-
(2009)
Biochemistry
, vol.48
, pp. 5313-5319
-
-
Morris, M.J.1
Basu, S.2
-
14
-
-
73149103952
-
Repression of translation of human estrogen receptor alpha by G-quadruplex formation
-
[14] Balkwill, G.D., Derecka, K., Garner, T.P., Hodgman, C., Flint, A.P., Searle, M.S., Repression of translation of human estrogen receptor alpha by G-quadruplex formation. Biochemistry 48 (2009), 11487–11495.
-
(2009)
Biochemistry
, vol.48
, pp. 11487-11495
-
-
Balkwill, G.D.1
Derecka, K.2
Garner, T.P.3
Hodgman, C.4
Flint, A.P.5
Searle, M.S.6
-
15
-
-
77957058196
-
5′-UTR G-quadruplex structures acting as translational repressors
-
[15] Beaudoin, J.D., Perreault, J.P., 5′-UTR G-quadruplex structures acting as translational repressors. Nucleic Acids Res. 38 (2010), 7022–7036.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7022-7036
-
-
Beaudoin, J.D.1
Perreault, J.P.2
-
16
-
-
77957082956
-
A G-quadruplex structure within the 5′-UTR of TRF2 mRNA represses translation in human cells
-
[16] Gomez, D., Guedin, A., Mergny, J.L., Salles, B., Riou, J.F., Teulade-Fichou, M.P., Calsou, P., A G-quadruplex structure within the 5′-UTR of TRF2 mRNA represses translation in human cells. Nucleic Acids Res. 38 (2010), 7187–7198.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7187-7198
-
-
Gomez, D.1
Guedin, A.2
Mergny, J.L.3
Salles, B.4
Riou, J.F.5
Teulade-Fichou, M.P.6
Calsou, P.7
-
17
-
-
77957061503
-
The BCL-2 5′ untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression
-
[17] Shahid, R., Bugaut, A., Balasubramanian, S., The BCL-2 5′ untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression. Biochemistry 49 (2010), 8300–8306.
-
(2010)
Biochemistry
, vol.49
, pp. 8300-8306
-
-
Shahid, R.1
Bugaut, A.2
Balasubramanian, S.3
-
18
-
-
78650271083
-
An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES
-
[18] Morris, M.J., Negishi, Y., Pazsint, C., Schonhoft, J.D., Basu, S., An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES. J. Am. Chem. Soc. 132 (2010), 17831–17839.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 17831-17839
-
-
Morris, M.J.1
Negishi, Y.2
Pazsint, C.3
Schonhoft, J.D.4
Basu, S.5
-
19
-
-
84455173130
-
Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′-untranslated region
-
[19] Lammich, S., Kamp, F., Wagner, J., Nuscher, B., Zilow, S., Ludwig, A.K., Willem, M., Haass, C., Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′-untranslated region. J. Biol. Chem. 286 (2011), 45063–45072.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 45063-45072
-
-
Lammich, S.1
Kamp, F.2
Wagner, J.3
Nuscher, B.4
Zilow, S.5
Ludwig, A.K.6
Willem, M.7
Haass, C.8
-
20
-
-
84874595270
-
The G-quadruplex augments translation in the 5′ untranslated region of transforming growth factor beta2
-
[20] Agarwala, P., Pandey, S., Mapa, K., Maiti, S., The G-quadruplex augments translation in the 5′ untranslated region of transforming growth factor beta2. Biochemistry 52 (2013), 1528–1538.
-
(2013)
Biochemistry
, vol.52
, pp. 1528-1538
-
-
Agarwala, P.1
Pandey, S.2
Mapa, K.3
Maiti, S.4
-
21
-
-
84861382319
-
The porphyrin TmPyP4 unfolds the extremely stable G-quadruplex in MT3-MMP mRNA and alleviates its repressive effect to enhance translation in eukaryotic cells
-
[21] Morris, M.J., Wingate, K.L., Silwal, J., Leeper, T.C., Basu, S., The porphyrin TmPyP4 unfolds the extremely stable G-quadruplex in MT3-MMP mRNA and alleviates its repressive effect to enhance translation in eukaryotic cells. Nucleic Acids Res. 40 (2012), 4137–4145.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4137-4145
-
-
Morris, M.J.1
Wingate, K.L.2
Silwal, J.3
Leeper, T.C.4
Basu, S.5
-
22
-
-
57049135230
-
Position and stability are determining factors for translation repression by an RNA G-quadruplex-forming sequence within the 5′ UTR of the NRAS proto-oncogene
-
[22] Kumari, S., Bugaut, A., Balasubramanian, S., Position and stability are determining factors for translation repression by an RNA G-quadruplex-forming sequence within the 5′ UTR of the NRAS proto-oncogene. Biochemistry 47 (2008), 12664–12669.
-
(2008)
Biochemistry
, vol.47
, pp. 12664-12669
-
-
Kumari, S.1
Bugaut, A.2
Balasubramanian, S.3
-
23
-
-
73349103817
-
Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
-
[23] Halder, K., Wieland, M., Hartig, J.S., Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes. Nucleic Acids Res. 37 (2009), 6811–6817.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6811-6817
-
-
Halder, K.1
Wieland, M.2
Hartig, J.S.3
-
24
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
[24] Wieland, M., Hartig, J.S., RNA quadruplex-based modulation of gene expression. Chem. Biol. 14 (2007), 757–763.
-
(2007)
Chem. Biol.
, vol.14
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
25
-
-
84893272629
-
New scoring system to identify RNA G-quadruplex folding
-
[25] Beaudoin, J.D., Jodoin, R., Perreault, J.P., New scoring system to identify RNA G-quadruplex folding. Nucleic Acids Res. 42 (2014), 1209–1223.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1209-1223
-
-
Beaudoin, J.D.1
Jodoin, R.2
Perreault, J.P.3
-
26
-
-
84879043770
-
Effect of loops and G-quartets on the stability of RNA G-quadruplexes
-
[26] Pandey, S., Agarwala, P., Maiti, S., Effect of loops and G-quartets on the stability of RNA G-quadruplexes. J. Phys. Chem. B 117 (2013), 6896–6905.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 6896-6905
-
-
Pandey, S.1
Agarwala, P.2
Maiti, S.3
-
27
-
-
67651207528
-
Differential biophysical behavior of human telomeric RNA and DNA quadruplex
-
[27] Arora, A., Maiti, S., Differential biophysical behavior of human telomeric RNA and DNA quadruplex. J. Phys. Chem. B 113 (2009), 10515–10520.
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 10515-10520
-
-
Arora, A.1
Maiti, S.2
-
28
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
[28] Pfaffl, M.W., A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res., 29, 2001, e45.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. e45
-
-
Pfaffl, M.W.1
-
29
-
-
33747819216
-
Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences
-
[29] Scaria, V., Hariharan, M., Arora, A., Maiti, S., Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. Nucleic Acids Res. 34 (2006), W683–W685.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W683-W685
-
-
Scaria, V.1
Hariharan, M.2
Arora, A.3
Maiti, S.4
-
30
-
-
0032508468
-
Following G-quartet formation by UV-spectroscopy
-
[30] Mergny, J.L., Phan, A.T., Lacroix, L., Following G-quartet formation by UV-spectroscopy. FEBS Lett. 435 (1998), 74–78.
-
(1998)
FEBS Lett.
, vol.435
, pp. 74-78
-
-
Mergny, J.L.1
Phan, A.T.2
Lacroix, L.3
-
31
-
-
27144440078
-
Thermal difference spectra: a specific signature for nucleic acid structures
-
[31] Mergny, J.L., Li, J., Lacroix, L., Amrane, S., Chaires, J.B., Thermal difference spectra: a specific signature for nucleic acid structures. Nucleic Acids Res., 33, 2005, e138.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. e138
-
-
Mergny, J.L.1
Li, J.2
Lacroix, L.3
Amrane, S.4
Chaires, J.B.5
-
32
-
-
1842292109
-
The position dependence of translational regulation via RNA–RNA and RNA–protein interactions in the 5′-untranslated region of eukaryotic mRNA is a function of the thermodynamic competence of 40 S ribosomes in translational initiation
-
[32] Koloteva, N., Muller, P.P., McCarthy, J.E., The position dependence of translational regulation via RNA–RNA and RNA–protein interactions in the 5′-untranslated region of eukaryotic mRNA is a function of the thermodynamic competence of 40 S ribosomes in translational initiation. J. Biol. Chem. 272 (1997), 16531–16539.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 16531-16539
-
-
Koloteva, N.1
Muller, P.P.2
McCarthy, J.E.3
-
33
-
-
56049121180
-
G-quadruplexes: the beginning and end of UTRs
-
[33] Huppert, J.L., Bugaut, A., Kumari, S., Balasubramanian, S., G-quadruplexes: the beginning and end of UTRs. Nucleic Acids Res. 36 (2008), 6260–6268.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6260-6268
-
-
Huppert, J.L.1
Bugaut, A.2
Kumari, S.3
Balasubramanian, S.4
-
34
-
-
77955684809
-
Sole and stable RNA duplexes of G-rich sequences located in the 5′-untranslated region of protooncogenes
-
[34] Saxena, S., Miyoshi, D., Sugimoto, N., Sole and stable RNA duplexes of G-rich sequences located in the 5′-untranslated region of protooncogenes. Biochemistry 49 (2010), 7190–7201.
-
(2010)
Biochemistry
, vol.49
, pp. 7190-7201
-
-
Saxena, S.1
Miyoshi, D.2
Sugimoto, N.3
-
35
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
[35] Wen, J.D., Lancaster, L., Hodges, C., Zeri, A.C., Yoshimura, S.H., Noller, H.F., Bustamante, C., Tinoco, I., Following translation by single ribosomes one codon at a time. Nature 452 (2008), 598–603.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
Noller, H.F.6
Bustamante, C.7
Tinoco, I.8
-
36
-
-
84885426150
-
Mechanochemical properties of individual human telomeric RNA (TERRA) G-quadruplexes
-
[36] Yangyuoru, P.M., Zhang, A.Y., Shi, Z., Koirala, D., Balasubramanian, S., Mao, H., Mechanochemical properties of individual human telomeric RNA (TERRA) G-quadruplexes. Chembiochem: Eur. J. Chem. Biol. 14 (2013), 1931–1935.
-
(2013)
Chembiochem: Eur. J. Chem. Biol.
, vol.14
, pp. 1931-1935
-
-
Yangyuoru, P.M.1
Zhang, A.Y.2
Shi, Z.3
Koirala, D.4
Balasubramanian, S.5
Mao, H.6
|