Different dynamic patterns of β-lactams, quinolones, glycopeptides and macrolides on mouse gut microbial diversity

PLoS ONE

Volumn 10, Issue 5, 2015, Pages

  Yin, Jia ^a   Prabhakar, M ^a   Wang, Shan ^a   Liao, Shuo Xi ^a   Peng, Xin ^a   He, Yan ^a   Chen, Yi Ran ^a   Shen, Hua Fang ^a   Su, Jin ^a   Chen, Ye ^a   Jiang, Yun Xia ^a   Zhang, Guo Xia ^a   Zhou, Hong Wei ^a  

^a SOUTHERN MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AZITHROMYCIN; CEFOPERAZONE PLUS SULBACTAM; CEFTRIAXONE; MEROPENEM; OFLOXACIN; VANCOMYCIN; ANTIINFECTIVE AGENT; BETA LACTAM; GLYCOPEPTIDE; MACROLIDE; QUINOLONE DERIVATIVE;

ACINETOBACTER; ACTINOBACTERIA; ADULT; ALISTIPES; ANIMAL EXPERIMENT; ANIMAL MODEL; ANTIBIOTIC THERAPY; ARTICLE; BACTERIAL GROWTH; BACTERIUM; BACTEROIDES; BACTEROIDETES; BETAPROTEOBACTERIA; CLOSTRIDIUM; CONTROLLED STUDY; DELTAPROTEOBACTERIA; DESULFOVIBRIONACEAE; DYSBIOSIS; EGGERTHELLA; ENTEROBACTERIACEAE; ENTEROCOCCUS; ESCHERICHIA; FIRMICUTES; GAMMAPROTEOBACTERIA; INTESTINE FLORA; LACTOBACILLUS; MALE; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MORAXELLACEAE; MOUSE; NONHUMAN; PAPILLIBACTER; PARABACTEROIDES; PORPHYROMONADACEAE; PREVOTELLA; PROTEOBACTERIA; PSEUDOMONADALES; SPOROBACTER; ANIMAL; BAGG ALBINO MOUSE; DRUG EFFECTS; FECES; MICROBIOLOGY;

ALISTIPES; ANIMALIA; CLOSTRIDIUM; CLOSTRIDIUM DIFFICILE; ENTEROCOCCUS; ESCHERICHIA; FIRMICUTES; MUS; PAPILLIBACTER; PREVOTELLA;

ANIMALS; ANTI-BACTERIAL AGENTS; BETA-LACTAMS; FECES; GASTROINTESTINAL MICROBIOME; GLYCOPEPTIDES; MACROLIDES; MALE; MICE, INBRED BALB C; QUINOLONES;

EID: 84929346824     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0126712     Document Type: Article

References (40)

1. Hawrelak A, Stephen PM (2004) The Causes of Intestinal Dysbiosis: A Review. Alternative Medicine Review 9 (2): 180-197. PMID: 15253677
2. Inna S, Shannon LR, Caetano LM, Brett BF (2010) Gut microbiota in health and disease. Physiol Rev 90: 859-904. doi: 10.1152/physrev.00045.2009 PMID: 20664075
3. Gibson GR (1998) Dietary modulation of the human gut microflora using prebiotics. Br J Nutr 80: 209-212.
4. Moore WE, Holdeman LV (1974) Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl Microbiol 27: 961-979. PMID: 4598229
5. Savage DC (1977) Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol 31: 107-133. PMID: 334036
6. Noack J, Kleessen B, Proll J, Dongowski G, Blaut M (1998) Dietary guar gum and pectin stimulate intestinal microbial polyamine synthesis in rats. J Nutr 128: 1385-1391. PMID: 9687560
7. Gibson GR, Roberfroid MB (1995) Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. J Nutr 125: 1401-1412. PMID: 7782892
8. Murray M, Pizzorno J (1998) Encyclopedia of Natural Medicine. Rocklin, CA: Prima Publishing.143 p.
9. Holzapfel WH, Haberer P, Snel J, Schillinger U, Huise HJ (1998). Overview of gut flora and probiotics. Int J Food Microbiol 41: 85-101. PMID: 9704859
10. Balsari A, Ceccarelli A, Dubini F, Fesce E, Poli G (1982) The fecal microbial population in the irritable bowel syndrome. Microbiologica 5: 185-194. PMID: 7121297
11. Onderdonk AB (1983) Role of the intestinal microflora in ulcerative colitis. In: Hentges DJ, ed. Human Intestinal Microflora in Health and Disease. New York, NY: Academic Press. 481-493.
12. Linskens RK, Huijsdens XW, Savelkoul PH, Vandenbroucke CM, Meuwissen SG (2001) The bacterial flora in inflammatory bowel disease: current insights in pathogenesis and the influence of antibiotics and probiotics. Scand J Gastroenterol Suppl 234: 29-40. PMID: 11768558
13. Peltonen R, Nenonen M, Helve T, Hannine O, Toivanen P, Eerola E (1997) Faecal microbial flora and disease activity in rheumatoid arthritis during a vegan diet. Br J Rheumatol 36: 64-68. PMID: 9117178
14. Brandtzaeg P (1997) Review article: Homing of mucosal immune cells - a possible connection between intestinal and articular inflammation. Aliment Pharmacol Ther 11: 24-37. PMID: 9467976
15. Cecilia J, Sonja L, Charlotta E, Janet KJ (2007) Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. The ISME Journal 1: 56-66. PMID: 18043614
16. Gismondo MR (1998) Antibiotic impact on intestinal microflora. GastroenterolInt 11: 29-30. PMID: 9445094
17. Nord CE (1990) Studies on the ecological impact of antibiotics. Eur J Clin Microbiol Infect Dis. 9: 517-518. PMID: 2226483
18. Cecilia J, Sonja LF, Charlotta E, Janet KJ (2010) Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology 156: 3216-3223. doi: 10.1099/mic.0.040618-0 PMID: 20705661
19. Peng Xin, Yu Ke-Qiang, Guan HD, Yun XJ, Wang Yu, Guo XZ, et al (2013) Comparison of direct boiling method with commercial kits for extracting fecal microbiome DNA by Illumina sequencing of 16S rRNA tags. Journal of Microbio Methods 95: 455-462. doi: 10.1016/j.mimet.2013.07.015 PMID: 23899773
20. Daniel GH, Christopher PF, Annelise EB (2008) Advantages and limitations of next-generation sequencing technologies: A comparison of electrophoresis and non-electrophoresis methods. Electrophoresis 29:4618-4626. doi: 10.1002/elps.200800456 PMID: 19053153
21. Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16):2194-2200. doi: 10.1093/bioinformatics/btr381 PMID: 21700674
22. Jiang XT, Zhang H, Sheng HF, Wang Y, He Y, Zou F, et al: Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons. PLoS One 2012, 7(1):e30230. doi: 10.1371/journal.pone.0030230 PMID: 22253923
23. Zhou J, Wu L, Deng Y, Zhi X, Jiang YH, Tu Q, et al (2011) Reproducibility and quantitation of amplicon sequencing-based detection. ISME J. 5 (8), 1303-1313. doi: 10.1038/ismej.2011.11 PMID: 21346791
24. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al., 2010. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7 (5), 335-336. doi: 10. 1038/nmeth.f.303 PMID: 20383131
25. Knecht H, Neulinger SC, Heinsen FA, Knecht C, Schilhabel A, Schmitz RA, et al. (2014) Effects of b- Lactam Antibiotics and Fluoroquinolones on Human Gut Microbiota in Relation to Clostridium difficile Associated Diarrhea. PLoS ONE 9(2): e89417. doi: 10.1371/journal.pone.0089417 PMID: 24586762
26. Hove H, Tvede M, Mortensen PB (1996) Antibiotic-associated diarrhea, Clostridium difficile, and shortchain fatty acids. Scand J Gastroenterol 31: 688-93 PMID: 8819219
27. Hill DA, Hoffmann C, Abt MC, Du Y, Kobuley D, Kirn TJ, et al. (2010) Metagenomic analysis reveal antibiotic-induced temporal and spatial changes in the intestinal microbiota with associated alterations in immune cell homeostasis. Mucosa Immunology 3: 148-158. doi: 10.1038/mi.2009.132 PMID: 19940845
28. Manichanh C, Reeder J, Gibert P, Varela E, Llopis M, Antolin M, et al. (2010) Reshaping the gut microbiome with bacterial transplantation and antibiotic intake. Genome Res 20: 1411-1419. doi: 10.1101/ gr.107987.110 PMID: 20736229
29. De La Cochetiere MF, Durand T, Lepage P, Bourreille A, Galmiche JP (2005) Resilience of the dominant human faecal microbiota upon short-course antibiotic challenge. Clin Microbiol 43: 88-92.
30. Dethlefsen L, Huse S, Sogin ML, Relman DA (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6(11): e280. doi: 10. 1371/journal.pbio.0060280 PMID: 19018661
31. Dethlefsen L, Huse S, Sogin ML, Relman DA (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6:e280. doi: 10.1371/ journal.pbio.0060280 PMID: 19018661
32. Panda S, El KI, Casellas F, Lopez VJ, Garcia CM, Santiago A, et al. (2014) Short-Term Effect of Antibiotics on Human Gut Microbiota. PLoS ONE 9(4): e95476. doi: 10.1371/journal PMID: 24748167
33. Donald JT (1985). Mode of action of 3-lactam antibiotics. Pharmac Ther 27:1-35.
34. Suto MJ, Domagala JM, Roland GE, Mailloux GB, Cohen MA (1992) Fluoroquinolones: relationships between structural variations, mammalian cell cytotoxicity, and antimicrobial ac tivity. J Med Chem 35: 4745-4750. PMID: 1469702
35. Anne V, Carolien O, Susana F, Lisanne J, Isaie R, Ruud SK, et al., (2014) Impact of oral vancomycin on gut microbiota, bile acid metabolism, and insulin sensitivity. Journal of Hepatology 60:824-831. doi: 10.1016/j.jhep.2013.11.034 PMID: 24316517
36. Watanakunakorn Chatrchai (1984) Mode of action and in-vitro activity of Vancomycin. J. Antimicrob Chemother 14: 7-18. PMID: 6440886
37. Tenson T, Lovmar M, Ehrenberg M (2003) The Mechanism of Action of Macrolides, Lincosamides and Streptogramin B Reveals the Nascent Peptide Exit Path in the Ribosome. Journal of Molecular Biology 330 (5): 1005-1014. PMID: 12860123
38. Seema S, Meenakshi M, Das BK, Arti K (2008) Enterococcal infections & antimicrobial resistance. Indian J Med Res 128:111-121. PMID: 19001673
39. John VU, John C (2011) Enterococcus: review of its physiology, pathogenesis, deceases and the challenges it poses for clinical microbiology. Front. Biol. 6(5):357-366.
40. Nguyen TL, Vieira-Silva S, Liston A, Raes J (2015) How informative is the mouse for human gut microbiota research?.Dis. Model. Mech. 8:1 1-16. doi: 10.1242/dmm.017400 PMID: 25561744