-
1
-
-
54049116765
-
Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
-
Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J. 2008. Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome. Molecular Cell 32:190-197. doi: 10.1016/j.molcel.2008.10.001.
-
(2008)
Molecular Cell
, vol.32
, pp. 190-197
-
-
Agirrezabala, X.1
Lei, J.2
Brunelle, J.L.3
Ortiz-Meoz, R.F.4
Green, R.5
Frank, J.6
-
3
-
-
84883672314
-
Structure of EF-G-ribosome complex in a pretranslocation state
-
Chen Y, Feng S, Kumar V, Ero R, Gao YG. 2013. Structure of EF-G-ribosome complex in a pretranslocation state. Nature Structural & Molecular Biology 20:1077-1084. doi: 10.1038/nsmb.2645.
-
(2013)
Nature Structural & Molecular Biology
, vol.20
, pp. 1077-1084
-
-
Chen, Y.1
Feng, S.2
Kumar, V.3
Ero, R.4
Gao, Y.G.5
-
4
-
-
44449125068
-
Spontaneous intersubunit rotation in single ribosomes
-
Cornish PV, Ermolenko DN, Noller HF, Ha T. 2008. Spontaneous intersubunit rotation in single ribosomes. Molecular Cell 30:578-588. doi: 10.1016/j.molcel.2008.05.004.
-
(2008)
Molecular Cell
, vol.30
, pp. 578-588
-
-
Cornish, P.V.1
Ermolenko, D.N.2
Noller, H.F.3
Ha, T.4
-
5
-
-
62449216538
-
Following movement of the L1 stalk between three functional states in single ribosomes
-
Cornish PV, Ermolenko DN, Staple DW, Hoang L, Hickerson RP, Noller HF, Ha T. 2009. Following movement of the L1 stalk between three functional states in single ribosomes. Proceedings of the National Academy of Sciences of USA 106:2571-2576. doi: 10.1073/pnas.0813180106.
-
(2009)
Proceedings of the National Academy of Sciences of USA
, vol.106
, pp. 2571-2576
-
-
Cornish, P.V.1
Ermolenko, D.N.2
Staple, D.W.3
Hoang, L.4
Hickerson, R.P.5
Noller, H.F.6
Ha, T.7
-
6
-
-
0037320652
-
Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
-
Duan J, Wainwright MS, Comeron JM, Saitou N, Sanders AR, Gelernter J, Gejman PV. 2003. Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Human Molecular Genetics 12:205-216. doi: 10.1093/hmg/ddg055.
-
(2003)
Human Molecular Genetics
, vol.12
, pp. 205-216
-
-
Duan, J.1
Wainwright, M.S.2
Comeron, J.M.3
Saitou, N.4
Sanders, A.R.5
Gelernter, J.6
Gejman, P.V.7
-
7
-
-
79956303529
-
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
-
Dunkle JA, Wang L, Feldman MB, Pulk A, Chen VB, Kapral GJ, Noeske J, Richardson JS, Blanchard SC, Cate JH. 2011. Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. Science 332:981-984. doi: 10.1126/science.1202692.
-
(2011)
Science
, vol.332
, pp. 981-984
-
-
Dunkle, J.A.1
Wang, L.2
Feldman, M.B.3
Pulk, A.4
Chen, V.B.5
Kapral, G.J.6
Noeske, J.7
Richardson, J.S.8
Blanchard, S.C.9
Cate, J.H.10
-
8
-
-
79953777970
-
mRNA translocation occurs during the second step of ribosomal intersubunit rotation
-
Ermolenko DN, Noller HF. 2011. mRNA translocation occurs during the second step of ribosomal intersubunit rotation. Nature Structural & Molecular Biology 18:457-462. doi: 10.1038/nsmb.2011.
-
(2011)
Nature Structural & Molecular Biology
, vol.18
, pp. 457-462
-
-
Ermolenko, D.N.1
Noller, H.F.2
-
10
-
-
42949126723
-
Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation
-
Fei J, Kosuri P, MacDougall DD, Gonzalez RL Jnr. 2008. Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. Molecular Cell 30:348-359. doi: 10.1016/j.molcel.2008.03.012.
-
(2008)
Molecular Cell
, vol.30
, pp. 348-359
-
-
Fei, J.1
Kosuri, P.2
MacDougall, D.D.3
Gonzalez, R.L.4
-
11
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
Frank J, Agrawal RK. 2000. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature 406:318-322. doi: 10.1038/35018597.
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
12
-
-
0038286524
-
Catalysis of ribosomal translocation by sparsomycin
-
Fredrick K, Noller HF. 2003. Catalysis of ribosomal translocation by sparsomycin. Science 300:1159-1162. doi: 10.1126/science.1084571.
-
(2003)
Science
, vol.300
, pp. 1159-1162
-
-
Fredrick, K.1
Noller, H.F.2
-
13
-
-
70350602056
-
The structure of the ribosome with elongation factor G trapped in the posttranslocational state
-
Gao YG, Selmer M, Dunham CM, Weixlbaumer A, Kelley AC, Ramakrishnan V. 2009. The structure of the ribosome with elongation factor G trapped in the posttranslocational state. Science 326:694-699. doi: 10.1126/science.1179709.
-
(2009)
Science
, vol.326
, pp. 694-699
-
-
Gao, Y.G.1
Selmer, M.2
Dunham, C.M.3
Weixlbaumer, A.4
Kelley, A.C.5
Ramakrishnan, V.6
-
14
-
-
84886634813
-
Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes
-
Gavrilova LP, Kostiashkina OE, Koteliansky VE, Rutkevitch NM, Spirin AS. 1976. Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. Journal of Molecular Biology 101:537-552. doi: 10.1016/0022-2836(76)90243-6.
-
(1976)
Journal of Molecular Biology
, vol.101
, pp. 537-552
-
-
Gavrilova, L.P.1
Kostiashkina, O.E.2
Koteliansky, V.E.3
Rutkevitch, N.M.4
Spirin, A.S.5
-
15
-
-
84870928681
-
Rotation of the head of the 30S ribosomal subunit during mRNA translocation
-
Guo Z, Noller HF. 2012. Rotation of the head of the 30S ribosomal subunit during mRNA translocation. Proceedings of the National Academy of Sciences of USA 109:20391-20394. doi: 10.1073/pnas.1218999109.
-
(2012)
Proceedings of the National Academy of Sciences of USA
, vol.109
, pp. 20391-20394
-
-
Guo, Z.1
Noller, H.F.2
-
17
-
-
55949134736
-
Structure of ratcheted ribosomes with tRNAs in hybrid states
-
Julian P, Konevega AL, Scheres SH, Lazaro M, Gil D, Wintermeyer W, Rodnina MV, Valle M. 2008. Structure of ratcheted ribosomes with tRNAs in hybrid states. Proceedings of the National Academy of Sciences of USA 105:16924-16927. doi: 10.1073/pnas.0809587105.
-
(2008)
Proceedings of the National Academy of Sciences of USA
, vol.105
, pp. 16924-16927
-
-
Julian, P.1
Konevega, A.L.2
Scheres, S.H.3
Lazaro, M.4
Gil, D.5
Wintermeyer, W.6
Rodnina, M.V.7
Valle, M.8
-
18
-
-
0030796260
-
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization
-
Link AJ, Phillips D, Church GM. 1997. Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization. Journal of Bacteriology 179:6228-6237.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 6228-6237
-
-
Link, A.J.1
Phillips, D.2
Church, G.M.3
-
19
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
Liphardt J, Onoa B, Smith SB, Tinoco I Jnr, Bustamante C. 2001. Reversible unfolding of single RNA molecules by mechanical force. Science 292:733-737. doi: 10.1126/science.1058498.
-
(2001)
Science
, vol.292
, pp. 733-737
-
-
Liphardt, J.1
Onoa, B.2
Smith, S.B.3
Jr, T.I.4
Bustamante, C.5
-
20
-
-
0024334898
-
Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
-
Moazed D, Noller HF. 1989a. Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites. Cell 57:585-597. doi: 10.1016/0092-8674(89)90128-1.
-
(1989)
Cell
, vol.57
, pp. 585-597
-
-
Moazed, D.1
Noller, H.F.2
-
21
-
-
0024458904
-
Intermediate states in the movement of transfer RNA in the ribosome
-
Moazed D, Noller HF. 1989b. Intermediate states in the movement of transfer RNA in the ribosome. Nature 342:142-148. doi: 10.1038/342142a0.
-
(1989)
Nature
, vol.342
, pp. 142-148
-
-
Moazed, D.1
Noller, H.F.2
-
22
-
-
33847051154
-
Identification of two distinct hybrid state intermediates on the ribosome
-
Munro JB, Altman RB, O'Connor N, Blanchard SC. 2007. Identification of two distinct hybrid state intermediates on the ribosome. Molecular Cell 25:505-517. doi: 10.1016/j.molcel.2007.01.022.
-
(2007)
Molecular Cell
, vol.25
, pp. 505-517
-
-
Munro, J.B.1
Altman, R.B.2
O'Connor, N.3
Blanchard, S.C.4
-
23
-
-
76249114762
-
Spontaneous formation of the unlocked state of the ribosome is a multistep process
-
Munro JB, Altman RB, Tung CS, Cate JH, Sanbonmatsu KY, Blanchard SC. 2010. Spontaneous formation of the unlocked state of the ribosome is a multistep process. Proceedings of the National Academy of Sciences of the USA 107:709-714. doi: 10.1073/pnas.0908597107.
-
(2010)
Proceedings of the National Academy of Sciences of the USA
, vol.107
, pp. 709-714
-
-
Munro, J.B.1
Altman, R.B.2
Tung, C.S.3
Cate, J.H.4
Sanbonmatsu, K.Y.5
Blanchard, S.C.6
-
24
-
-
33845899137
-
Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure
-
Nackley AG, Shabalina SA, Tchivileva IE, Satterfield K, Korchynskyi O, Makarov SS, Maixner W, Diatchenko L. 2006. Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure. Science 314:1930-1933. doi: 10.1126/science.1131262.
-
(2006)
Science
, vol.314
, pp. 1930-1933
-
-
Nackley, A.G.1
Shabalina, S.A.2
Tchivileva, I.E.3
Satterfield, K.4
Korchynskyi, O.5
Makarov, S.S.6
Maixner, W.7
Diatchenko, L.8
-
25
-
-
33646557329
-
A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
-
Namy O, Moran SJ, Stuart DI, Gilbert RJ, Brierley I. 2006. A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature 441:244-247. doi: 10.1038/nature04735.
-
(2006)
Nature
, vol.441
, pp. 244-247
-
-
Namy, O.1
Moran, S.J.2
Stuart, D.I.3
Gilbert, R.J.4
Brierley, I.5
-
27
-
-
84879661481
-
Control of ribosomal subunit rotation by elongation factor G
-
Pulk A, Cate JH. 2013. Control of ribosomal subunit rotation by elongation factor G. Science 340:1235970. doi: 10.1126/science.1235970.
-
(2013)
Science
, vol.340
, pp. 1235970
-
-
Pulk, A.1
Cate, J.H.2
-
28
-
-
78649873931
-
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
-
Ratje AH, Loerke J, Mikolajka A, Brunner M, Hildebrand PW, Starosta AL, Donhofer A, Connell SR, Fucini P, Mielke T, Whitford PC, Onuchic JN, Yu Y, Sanbonmatsu KY, Hartmann RK, Penczek PA, Wilson DN, Spahn CM. 2010. Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites. Nature 468:713-716. doi: 10.1038/nature09547.
-
(2010)
Nature
, vol.468
, pp. 713-716
-
-
Ratje, A.H.1
Loerke, J.2
Mikolajka, A.3
Brunner, M.4
Hildebrand, P.W.5
Starosta, A.L.6
Donhofer, A.7
Connell, S.R.8
Fucini, P.9
Mielke, T.10
Whitford, P.C.11
Onuchic, J.N.12
Yu, Y.13
Sanbonmatsu, K.Y.14
Hartmann, R.K.15
Penczek, P.A.16
Wilson, D.N.17
Spahn, C.M.18
-
29
-
-
0031028688
-
Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome
-
Rodnina MV, Savelsbergh A, Katunin VI, Wintermeyer W. 1997. Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome. Nature 385:37-41. doi: 10.1038/385037a0.
-
(1997)
Nature
, vol.385
, pp. 37-41
-
-
Rodnina, M.V.1
Savelsbergh, A.2
Katunin, V.I.3
Wintermeyer, W.4
-
30
-
-
0038433302
-
An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation
-
Savelsbergh A, Katunin VI, Mohr D, Peske F, Rodnina MV, Wintermeyer W. 2003. An elongation factor G-induced ribosome rearrangement precedes tRNA-mRNA translocation. Molecular Cell 11:1517-1523. doi: 10.1016/S1097-2765(03)00230-2.
-
(2003)
Molecular Cell
, vol.11
, pp. 1517-1523
-
-
Savelsbergh, A.1
Katunin, V.I.2
Mohr, D.3
Peske, F.4
Rodnina, M.V.5
Wintermeyer, W.6
-
31
-
-
0346362324
-
EF-G-independent reactivity of a pre-translocation-state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding
-
Sharma D, Southworth DR, Green R. 2004. EF-G-independent reactivity of a pre-translocation-state ribosome complex with the aminoacyl tRNA substrate puromycin supports an intermediate (hybrid) state of tRNA binding. RNA 10:102-113. doi: 10.1261/rna.5148704.
-
(2004)
RNA
, vol.10
, pp. 102-113
-
-
Sharma, D.1
Southworth, D.R.2
Green, R.3
-
32
-
-
33845631049
-
Reverse translocation of tRNA in the ribosome
-
Shoji S, Walker SE, Fredrick K. 2006. Reverse translocation of tRNA in the ribosome. Molecular Cell 24:931-942. doi: 10.1016/j.molcel.2006.11.025.
-
(2006)
Molecular Cell
, vol.24
, pp. 931-942
-
-
Shoji, S.1
Walker, S.E.2
Fredrick, K.3
-
33
-
-
0037286741
-
Optical-trap force transducer that operates by direct measurement of light momentum
-
Smith SB, Cui Y, Bustamante C. 2003. Optical-trap force transducer that operates by direct measurement of light momentum. Methods in Enzymology 361:134-162. doi: 10.1016/S0076-6879(03)61009-8.
-
(2003)
Methods in Enzymology
, vol.361
, pp. 134-162
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
34
-
-
8744316069
-
The effect of force on thermodynamics and kinetics: Unfolding single RNA molecules
-
Tinoco I Jnr, Collin D, Li PT. 2004. The effect of force on thermodynamics and kinetics: unfolding single RNA molecules. Biochemical Society Transactions 32:757-760. doi: 10.1042/BST0320757.
-
(2004)
Biochemical Society Transactions
, vol.32
, pp. 757-760
-
-
Jr, T.I.1
Collin, D.2
Li, P.T.3
-
35
-
-
84879663355
-
Elongation factor G bound to the ribosome in an intermediate state of translocation
-
Tourigny DS, Fernandez IS, Kelley AC, Ramakrishnan V. 2013. Elongation factor G bound to the ribosome in an intermediate state of translocation. Science 340:1235490. doi: 10.1126/science.1235490.
-
(2013)
Science
, vol.340
, pp. 1235490
-
-
Tourigny, D.S.1
Fernandez, I.S.2
Kelley, A.C.3
Ramakrishnan, V.4
-
36
-
-
0025878209
-
Translational frameshifting in the Escherichia coli dnaX gene in vitro
-
Tsuchihashi Z. 1991. Translational frameshifting in the Escherichia coli dnaX gene in vitro. Nucleic Acids Research 19:2457-2462. doi: 10.1093/nar/19.9.2457.
-
(1991)
Nucleic Acids Research
, vol.19
, pp. 2457-2462
-
-
Tsuchihashi, Z.1
-
37
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
Wang MD, Schnitzer MJ, Yin H, Landick R, Gelles J, Block SM. 1998. Force and velocity measured for single molecules of RNA polymerase. Science 282:902-907. doi: 10.1126/science.282.5390.902.
-
(1998)
Science
, vol.282
, pp. 902-907
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
-
38
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, Tinoco I. 2008. Following translation by single ribosomes one codon at a time. Nature 452:598-603. doi: 10.1038/nature06716.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
Noller, H.F.6
Bustamante, C.7
Tinoco, I.8
-
39
-
-
84879625362
-
Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation
-
Zhou J, Lancaster L, Donohue JP, Noller HF. 2013. Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation. Science 340:1236086. doi: 10.1126/science.1236086.
-
(2013)
Science
, vol.340
, pp. 1236086
-
-
Zhou, J.1
Lancaster, L.2
Donohue, J.P.3
Noller, H.F.4
|