-
1
-
-
0033782777
-
Protein glucosylation and its role in protein folding
-
Parodi, A. J. Protein glucosylation and its role in protein folding. Annual Review of Biochemistry 69, 69-93 (2000).
-
(2000)
Annual Review of Biochemistry
, vol.69
, pp. 69-93
-
-
Parodi, A.J.1
-
2
-
-
0036019907
-
Protein glycosylation: Nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds
-
Spiro, R. G. Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds. Glycobiology 12, 43R-56R (2002).
-
(2002)
Glycobiology
, vol.12
, pp. 43R-56R
-
-
Spiro, R.G.1
-
3
-
-
0035937505
-
Intracellular functions of N-linked glycans
-
Helenius, A. & Aebi, M. Intracellular functions of N-linked glycans. Science 291, 2364-2369 (2001).
-
(2001)
Science
, vol.291
, pp. 2364-2369
-
-
Helenius, A.1
Aebi, M.2
-
4
-
-
0035937424
-
Glycosylation, immunity, and autoimmunity
-
Lowe, J. B. Glycosylation, immunity, and autoimmunity. Cell 104, 809-812 (2001).
-
(2001)
Cell
, vol.104
, pp. 809-812
-
-
Lowe, J.B.1
-
5
-
-
0036462601
-
Protein N-glycosylation along the secretory pathway: Relationship to organelle topography and function, protein quality control, and cell interactions
-
Roth, J. Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. Chem. Rev. 102, 285-304 (2002).
-
(2002)
Chem. Rev.
, vol.102
, pp. 285-304
-
-
Roth, J.1
-
6
-
-
0034131162
-
Protein glycosylation and diseases: Blood and urinary oligosaccharides as markers for diagnosis and therapeutic monitoring
-
Durand, G. & Seta, N. Protein glycosylation and diseases: blood and urinary oligosaccharides as markers for diagnosis and therapeutic monitoring. Clin. Chem. 46, 795-805 (2000).
-
(2000)
Clin. Chem.
, vol.46
, pp. 795-805
-
-
Durand, G.1
Seta, N.2
-
7
-
-
2542640080
-
Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: Opportunities and potential limitations
-
Diamandis, E. P. Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. Mol. Cell. Proteomics 3, 367-378 (2004).
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 367-378
-
-
Diamandis, E.P.1
-
8
-
-
85128759053
-
A list of candidate cancer biomarkers for targeted proteomics
-
Polanski, M., Anderson, N. L., Polanski, M. & Anderson, N. L. A list of candidate cancer biomarkers for targeted proteomics. Biomarker Insights 1, 1-48 (2007).
-
(2007)
Biomarker Insights
, vol.1
, pp. 1-48
-
-
Polanski, M.1
Anderson, N.L.2
Polanski, M.3
Anderson, N.L.4
-
9
-
-
77951930076
-
Glycoproteomics and clinical applications
-
Tian, Y. & Zhang, H. Glycoproteomics and clinical applications. PROTEOMICS - Clin. Appl. 4, 124-132 (2010).
-
(2010)
PROTEOMICS - Clin. Appl.
, vol.4
, pp. 124-132
-
-
Tian, Y.1
Zhang, H.2
-
10
-
-
78651105000
-
Mass spectrometry based glycoproteomics-from a proteomics perspective
-
Pan, S., Chen, R., Aebersold, R. & Brentnall, T. A. Mass spectrometry based glycoproteomics-from a proteomics perspective. Mol. Cell. Proteomics 10, 10.1074/mcp.R110.003251 (2011).
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Pan, S.1
Chen, R.2
Aebersold, R.3
Brentnall, T.A.4
-
11
-
-
84868126419
-
Mass spectrometry-based detection and quantification of plasma glycoproteins using selective reaction monitoring
-
Kim, Y. J., Zaidi-Ainouch, Z., Gallien, S. & Domon, B. Mass spectrometry-based detection and quantification of plasma glycoproteins using selective reaction monitoring. Nat. Protoc. 7, 859-871 (2012).
-
(2012)
Nat. Protoc.
, vol.7
, pp. 859-871
-
-
Kim, Y.J.1
Zaidi-Ainouch, Z.2
Gallien, S.3
Domon, B.4
-
12
-
-
0037685263
-
Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins
-
Kaji, H. et al. Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat. Biotech. 21, 667-672 (2003).
-
(2003)
Nat. Biotech.
, vol.21
, pp. 667-672
-
-
Kaji, H.1
-
13
-
-
5644244327
-
Approach to the comprehensive analysis of glycoproteins isolated from human serum using a multilectin affinity column
-
Yang, Z. & Hancock, W. S. Approach to the comprehensive analysis of glycoproteins isolated from human serum using a multilectin affinity column. J. Chromatogr. A 1053, 79-88 (2004).
-
(2004)
J. Chromatogr. A
, vol.1053
, pp. 79-88
-
-
Yang, Z.1
Hancock, W.S.2
-
14
-
-
35649011957
-
Exploring the sialiome using titanium dioxide chromatography and mass spectrometry
-
Larsen, M. R., Jensen, S. S., Jakobsen, L. A. & Heegaard, N. H. H. Exploring the Sialiome Using Titanium Dioxide Chromatography and Mass Spectrometry. Mol. Cell Proteomics 6, 1778-1787 (2007).
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 1778-1787
-
-
Larsen, M.R.1
Jensen, S.S.2
Jakobsen, L.A.3
Heegaard, N.H.H.4
-
15
-
-
78649961364
-
Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry
-
Palmisano, G. et al. Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry. Nat. Protoc. 5, 1974-1982 (2010).
-
(2010)
Nat. Protoc.
, vol.5
, pp. 1974-1982
-
-
Palmisano, G.1
-
16
-
-
4444269089
-
A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation
-
Hägglund, P., Bunkenborg, J., Elortza, F., Jensen, O. N. & Roepstorff, P. A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation. J. Proteome Res. 3, 556-566 (2004).
-
(2004)
J. Proteome Res.
, vol.3
, pp. 556-566
-
-
Hägglund, P.1
Bunkenborg, J.2
Elortza, F.3
Jensen, O.N.4
Roepstorff, P.5
-
17
-
-
84864221492
-
Synthesis of branched PEG brushes hybrid hydrophilic magnetic nanoparticles for the selective enrichment of N-linked glycopeptides
-
Xiong, Z. et al. Synthesis of branched PEG brushes hybrid hydrophilic magnetic nanoparticles for the selective enrichment of N-linked glycopeptides. Chem. Commun. 48, 8138-8140 (2012).
-
(2012)
Chem. Commun.
, vol.48
, pp. 8138-8140
-
-
Xiong, Z.1
-
18
-
-
84861844024
-
Centrifugation assisted microreactor enables facile integration of trypsin digestion, hydrophilic interaction chromatography enrichment, and on-column deglycosylation for rapid and sensitive N-glycoproteome analysis
-
Zhu, J. et al. Centrifugation assisted microreactor enables facile integration of trypsin digestion, hydrophilic interaction chromatography enrichment, and on-column deglycosylation for rapid and sensitive N-glycoproteome analysis. Anal. Chem. 84, 5146-5153 (2012).
-
(2012)
Anal. Chem.
, vol.84
, pp. 5146-5153
-
-
Zhu, J.1
-
19
-
-
0038699625
-
Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
-
Zhang, H., Li, X.-j., Martin, D. B. & Aebersold, R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotech. 21, 660-666 (2003).
-
(2003)
Nat. Biotech.
, vol.21
, pp. 660-666
-
-
Zhang, H.1
Li, X.-J.2
Martin, D.B.3
Aebersold, R.4
-
20
-
-
33846488076
-
Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics
-
Sun, B. et al. Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics. Mol. Cell. Proteomics 6, 141-149 (2007).
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 141-149
-
-
Sun, B.1
-
21
-
-
34250014373
-
Solid-phase extraction of N-linked glycopeptides
-
Tian, Y., Zhou, Y., Elliott, S., Aebersold, R. & Zhang, H. Solid-phase extraction of N-linked glycopeptides. Nat. Protoc. 2, 334-339 (2007).
-
(2007)
Nat. Protoc.
, vol.2
, pp. 334-339
-
-
Tian, Y.1
Zhou, Y.2
Elliott, S.3
Aebersold, R.4
Zhang, H.5
-
22
-
-
61849164561
-
Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry
-
Chen, R. et al. Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. J. Proteome Res. 8, 651-661 (2009).
-
(2009)
J. Proteome Res.
, vol.8
, pp. 651-661
-
-
Chen, R.1
-
23
-
-
84859562227
-
Lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers
-
Drake, P. M. et al. Lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers. J. Proteome Res. 11, 2508-2520 (2012).
-
(2012)
J. Proteome Res.
, vol.11
, pp. 2508-2520
-
-
Drake, P.M.1
-
24
-
-
84899549399
-
Site-specific characterization of cell membrane N-glycosylation with integrated hydrophilic interaction chromatography solid phase extraction and LC-MS/MS
-
Chen, R., Seebun, D., Ye, M., Zou, H. & Figeys, D. Site-specific characterization of cell membrane N-glycosylation with integrated hydrophilic interaction chromatography solid phase extraction and LC-MS/MS. Journal of Proteomics 103, 194-203 (2014).
-
(2014)
Journal of Proteomics
, vol.103
, pp. 194-203
-
-
Chen, R.1
Seebun, D.2
Ye, M.3
Zou, H.4
Figeys, D.5
-
25
-
-
84866998870
-
Large-scale identification of target proteins of a glycosyltransferase isozyme by lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach
-
Sugahara, D., Kaji, H., Sugihara, K., Asano, M. & Narimatsu, H. Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach. Sci. Rep. 2, 10.1038/srep00680 (2012).
-
(2012)
Sci. Rep.
, vol.2
-
-
Sugahara, D.1
Kaji, H.2
Sugihara, K.3
Asano, M.4
Narimatsu, H.5
-
26
-
-
84893307569
-
A comparative study of lectin affinity based plant N-glycoproteome profiling using tomato fruit as a model
-
Ruiz-May, E. et al. A comparative study of lectin affinity based plant N-glycoproteome profiling using tomato fruit as a model. Mol. Cell Proteomics 13, 566-579 (2014).
-
(2014)
Mol. Cell Proteomics
, vol.13
, pp. 566-579
-
-
Ruiz-May, E.1
-
27
-
-
61449097424
-
High-efficiency labeling of sialylated glycoproteins on living cells
-
Zeng, Y. et al. High-efficiency labeling of sialylated glycoproteins on living cells. Nat. Meth. 6, 207-209 (2009).
-
(2009)
Nat. Meth.
, vol.6
, pp. 207-209
-
-
Zeng, Y.1
-
28
-
-
70350735945
-
Enrichment of glycopeptides for glycan structure and attachment site identification
-
Nilsson, J. et al. Enrichment of glycopeptides for glycan structure and attachment site identification. Nat. Meth. 6, 809-811 (2009).
-
(2009)
Nat. Meth.
, vol.6
, pp. 809-811
-
-
Nilsson, J.1
-
29
-
-
84862306094
-
Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry
-
M111 010397
-
Taga, Y., Kusubata, M., Ogawa-Goto, K. & Hattori, S. Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry. Mol. Cell Proteomics 11, M111 010397 (2012).
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Taga, Y.1
Kusubata, M.2
Ogawa-Goto, K.3
Hattori, S.4
-
30
-
-
61849115201
-
Identification of N-glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach
-
Cao, J. et al. Identification of N-glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach. J. Proteome Res. 8, 662-672 (2009).
-
(2009)
J. Proteome Res.
, vol.8
, pp. 662-672
-
-
Cao, J.1
-
31
-
-
61649103556
-
Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome
-
McDonald, C. A., Yang, J. Y., Marathe, V., Yen, T.-Y. & Macher, B. A. Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome. Mol. Cell. Proteomics 8, 287-301 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 287-301
-
-
McDonald, C.A.1
Yang, J.Y.2
Marathe, V.3
Yen, T.-Y.4
MacHer, B.A.5
-
32
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J. & Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotech. 26, 1367-1372 (2008).
-
(2008)
Nat. Biotech.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
33
-
-
84872546679
-
Structural and functional characteristics of cGMP-dependent methionine oxidation in arabidopsis thaliana proteins
-
Marondedze, C. et al. Structural and functional characteristics of cGMP-dependent methionine oxidation in Arabidopsis thaliana proteins. Cell Commun. and Sig. 11, 1 (2013).
-
(2013)
Cell Commun. and Sig.
, vol.11
, pp. 1
-
-
Marondedze, C.1
-
34
-
-
84872254434
-
Redox proteomics: Chemical principles, methodological approaches and biological/biomedical promises
-
Bachi, A., Dalle-Donne, I. & Scaloni, A. Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises. Chem. Rev. 113, 596-698 (2013).
-
(2013)
Chem. Rev.
, vol.113
, pp. 596-698
-
-
Bachi, A.1
Dalle-Donne, I.2
Scaloni, A.3
-
35
-
-
37049048062
-
Tryptophan modification in polypeptide chains
-
Previero, A., Signor, A. & Bezzi, S. Tryptophan modification in polypeptide chains. Nature 204, 687-688 (1964).
-
(1964)
Nature
, vol.204
, pp. 687-688
-
-
Previero, A.1
Signor, A.2
Bezzi, S.3
-
36
-
-
77049305703
-
-
(eds. L. W. Melville & R. S. Tipson) (Academic Press)
-
Bobbitt, J. M. in Advances in Carbohydrate Chemistry, Vol. Volume 11. (eds. L. W. Melville & R. S. Tipson) 1-41 (Academic Press, 1956).
-
(1956)
Advances in Carbohydrate Chemistry
, vol.11
, pp. 1-41
-
-
Bobbitt, J.M.1
-
37
-
-
0026826660
-
Site-directed conjugation of nonpeptide groups to peptides and proteins via periodate oxidation of a 2-amino alcohol. Application to modification at N-terminal serine
-
Geoghegan, K. F. & Stroh, J. G. Site-directed conjugation of nonpeptide groups to peptides and proteins via periodate oxidation of a 2-amino alcohol. Application to modification at N-terminal serine. Bioconjugate Chem. 3, 138-146 (1992).
-
(1992)
Bioconjugate Chem.
, vol.3
, pp. 138-146
-
-
Geoghegan, K.F.1
Stroh, J.G.2
-
38
-
-
0018786839
-
Labeling of proteins by reductive methylation using sodium cyanoborohydride
-
Jentoft, N. & Dearborn, D. G. Labeling of proteins by reductive methylation using sodium cyanoborohydride. J. Biol. Chem. 254, 4359-4365 (1979).
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 4359-4365
-
-
Jentoft, N.1
Dearborn, D.G.2
-
39
-
-
0348014635
-
Stable-isotope dimethyl labeling for quantitative proteomics
-
Hsu, J.-L., Huang, S.-Y., Chow, N.-H. & Chen, S.-H. Stable-isotope dimethyl labeling for quantitative proteomics. Anal. Chem. 75, 6843-6852 (2003).
-
(2003)
Anal. Chem.
, vol.75
, pp. 6843-6852
-
-
Hsu, J.-L.1
Huang, S.-Y.2
Chow, N.-H.3
Chen, S.-H.4
-
40
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S. & Heck, A. J. R. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 4, 484-494 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.R.5
-
41
-
-
84891897367
-
N-glycoproteome analysis of the secretome of human metastatic hepatocellular carcinoma cell lines combining hydrazide chemistry, HILIC enrichment and mass spectrometry
-
Li, X. et al. N-glycoproteome analysis of the secretome of human metastatic hepatocellular carcinoma cell lines combining hydrazide chemistry, HILIC enrichment and mass spectrometry. PLoS One 8, e81921 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e81921
-
-
Li, X.1
-
42
-
-
84896744675
-
Comprehensive mapping of protein N-glycosylation in human liver by combining hydrophilic interaction chromatography and hydrazide chemistry
-
Zhu, J. et al. Comprehensive Mapping of protein N-glycosylation in human liver by combining hydrophilic interaction chromatography and hydrazide chemistry. J. Proteome Res. 13, 1713-1721 (2014).
-
(2014)
J. Proteome Res.
, vol.13
, pp. 1713-1721
-
-
Zhu, J.1
-
43
-
-
77953240454
-
Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints
-
Zielinska, D. F., Gnad, F., Wisniewski, J. R. & Mann, M. Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints. Cell 141, 897-907 (2010).
-
(2010)
Cell
, vol.141
, pp. 897-907
-
-
Zielinska, D.F.1
Gnad, F.2
Wisniewski, J.R.3
Mann, M.4
-
44
-
-
80054711214
-
Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach
-
Song, C. et al. Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach. Anal. Chem. 83, 7755-7762 (2011).
-
(2011)
Anal. Chem.
, vol.83
, pp. 7755-7762
-
-
Song, C.1
-
45
-
-
84914100244
-
In situ sample processing approach (iSPA) for comprehensive quantitative phosphoproteome analysis
-
Huang, J. et al. In situ sample processing approach (iSPA) for comprehensive quantitative phosphoproteome analysis. J. Proteome Res. 13, 3896-3904 (2014).
-
(2014)
J. Proteome Res.
, vol.13
, pp. 3896-3904
-
-
Huang, J.1
-
46
-
-
84857873715
-
Chemical deamidation: A common pitfall in large-scale N-linked glycoproteomic mass spectrometry-based analyses
-
Palmisano, G., Melo-Braga, M. N., Engholm-Keller, K., Parker, B. L. & Larsen, M. R. Chemical Deamidation: A Common Pitfall in Large-Scale N-Linked Glycoproteomic Mass Spectrometry-Based Analyses. J. Proteome Res. 11, 1949-1957 (2012).
-
(2012)
J. Proteome Res.
, vol.11
, pp. 1949-1957
-
-
Palmisano, G.1
Melo-Braga, M.N.2
Engholm-Keller, K.3
Parker, B.L.4
Larsen, M.R.5
-
47
-
-
77950453754
-
A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis
-
Wang, F. et al. A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis. Anal. Chem. 82, 3007-3015 (2010).
-
(2010)
Anal. Chem.
, vol.82
, pp. 3007-3015
-
-
Wang, F.1
|