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Volumn 31, Issue 7, 2015, Pages 1130-1132

QuasR: Quantification and annotation of short reads in R

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOLOGY; COMPUTER PROGRAM; CONTIG MAPPING; DNA SEQUENCE; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; PROCEDURES;

EID: 84929144040     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu781     Document Type: Article
Times cited : (208)

References (9)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 2
    • 77955443472 scopus 로고    scopus 로고
    • Detection of splice junctions from paired-end RNA-seq data by SpliceMap
    • Au, K.F. et al. (2010) Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res., 38, 4570-4578.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4570-4578
    • Au, K.F.1
  • 3
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman, R.C. et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol., 5, R80.
    • (2004) Genome Biol. , vol.5 , pp. R80
    • Gentleman, R.C.1
  • 4
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1
  • 5
    • 84883368195 scopus 로고    scopus 로고
    • Software for computing and annotating genomic ranges
    • Lawrence, M. et al. (2013) Software for computing and annotating genomic ranges. PLoS Comput Biol., 9, 1003118.
    • (2013) PLoS Comput Biol. , vol.9 , pp. 1003118
    • Lawrence, M.1
  • 6
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H. et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 7
    • 84878580738 scopus 로고    scopus 로고
    • The Subread aligner: Fast, accurate and scalable read mapping by seed-and-vote
    • Liao, Y. et al. (2013) The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Res., 41, e108.
    • (2013) Nucleic Acids Res. , vol.41 , pp. e108
    • Liao, Y.1
  • 8
    • 70349866687 scopus 로고    scopus 로고
    • ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data
    • Morgan, M. et al. (2009) ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics, 25, 2607-2608.
    • (2009) Bioinformatics , vol.25 , pp. 2607-2608
    • Morgan, M.1
  • 9
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D. et al. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.