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Volumn 31, Issue 3, 2015, Pages 445-446

FungiFun2: A comprehensive online resource for systematic analysis of gene lists from fungal species

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER PROGRAM; FACTUAL DATABASE; FUNGAL GENE; GENETICS; INTERNET; PROCEDURES; SYSTEMS BIOLOGY;

EID: 84929141855     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu627     Document Type: Article
Times cited : (180)

References (18)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The gene ontology consortium
    • Ashburner, M. et al. (2000) Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 84862262073 scopus 로고    scopus 로고
    • Yeastmine-an integrated data warehouse for Saccharomyces Cerevisiae data as a multipurpose tool-kit
    • Balakrishnan, R. et al. (2012) Yeastmine-an integrated data warehouse for Saccharomyces Cerevisiae data as a multipurpose tool-kit. Database (Oxford), 2012, bar062.
    • (2012) Database (Oxford) , vol.2012 , pp. bar062
    • Balakrishnan, R.1
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B Methodol., 57, 289-300.
    • (1995) J. R. Stat. Soc. B Methodol. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 79952741082 scopus 로고    scopus 로고
    • The fungi: 1, 2, 3.. 5.1 million species?
    • Blackwell, M. (2011) The fungi: 1, 2, 3.. 5.1 million species? Am. J. Bot., 98, 426-438.
    • (2011) Am. J. Bot. , vol.98 , pp. 426-438
    • Blackwell, M.1
  • 5
    • 84871292787 scopus 로고    scopus 로고
    • Regulation of fungal secondary metabolism
    • Brakhage, A.A. (2013) Regulation of fungal secondary metabolism. Nat. Rev. Microbiol., 11, 21-32.
    • (2013) Nat. Rev. Microbiol. , vol.11 , pp. 21-32
    • Brakhage, A.A.1
  • 6
    • 84891796318 scopus 로고    scopus 로고
    • The Aspergillus genome database: Multispecies curation and incorporation of rna-seq data to improve structural gene annotations
    • Cerqueira, G.C. et al. (2014) The Aspergillus genome database: multispecies curation and incorporation of rna-seq data to improve structural gene annotations. Nucleic Acids Res., 42, D705-D710.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D705-D710
    • Cerqueira, G.C.1
  • 7
    • 84858588614 scopus 로고    scopus 로고
    • Saccharomyces genome database: The genomics resource of budding yeast
    • Cherry, J.M. et al. (2012) Saccharomyces genome database: the genomics resource of budding yeast. Nucleic Acids Res., 40, D700-D705.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D700-D705
    • Cherry, J.M.1
  • 8
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A. et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21, 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1
  • 9
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang, D.W. et al. (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, 37, 1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang, D.W.1
  • 10
    • 84862232618 scopus 로고    scopus 로고
    • The Candida genome database incorporates multiple Candida species: Multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
    • Inglis, D.O. et al. (2012) The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata. Nucleic Acids Res., 40, D667-D674.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D667-D674
    • Inglis, D.O.1
  • 11
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M. and Goto, S. (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 12
    • 75549090948 scopus 로고    scopus 로고
    • Ensembl genomes: Extending ensembl across the taxonomic space
    • Kersey, P.J. et al. (2010) Ensembl genomes: extending ensembl across the taxonomic space. Nucleic Acids Res., 38, D563-D569.
    • (2010) Nucleic Acids Res. , vol.38 , pp. D563-D569
    • Kersey, P.J.1
  • 13
    • 79952039532 scopus 로고    scopus 로고
    • FungiFun: A web-based application for functional categorization of fungal genes and proteins
    • Priebe, S. et al. (2010) FungiFun: a web-based application for functional categorization of fungal genes and proteins. Fungal Genet. Biol., 48, 353-358.
    • (2010) Fungal Genet. Biol. , vol.48 , pp. 353-358
    • Priebe, S.1
  • 14
    • 85004075745 scopus 로고    scopus 로고
    • De Novo Whole-Genome Sequence and Genome Annotation of Lichtheimia ramosa
    • Linde, J. et al. (2014) De Novo Whole-Genome Sequence and Genome Annotation of Lichtheimia ramosa. Genome Announc., 2, e00888-14.
    • (2014) Genome Announc. , vol.2 , pp. e00888-e00914
    • Linde, J.1
  • 15
    • 9144257282 scopus 로고    scopus 로고
    • The funcat, a functional annotation scheme for systematic classification of proteins from whole genomes
    • Rüpp, A. et al. (2004) The funcat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res., 32, 5539-5545.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5539-5545
    • Rüpp, A.1
  • 16
    • 84874730555 scopus 로고    scopus 로고
    • RamiGO: An R/Bioconductor package providing an AmiGO visualize interface
    • Schröder, M.S. et al. (2013) RamiGO: an R/Bioconductor package providing an AmiGO visualize interface. Bioinformatics, 29, 666-668.
    • (2013) Bioinformatics , vol.29 , pp. 666-668
    • Schröder, M.S.1
  • 17
    • 84929144085 scopus 로고    scopus 로고
    • Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: An evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina)
    • Schwartze, V.U. et al. (2014) Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). PLoS Genet., 10, e1004496.
    • (2014) PLoS Genet. , vol.10 , pp. e1004496
    • Schwartze, V.U.1
  • 18
    • 58149197598 scopus 로고    scopus 로고
    • PEDANT covers all complete RefSeq genomes
    • Walter, M.C. et al. (2009) PEDANT covers all complete RefSeq genomes. Nucleic Acids Res., 37, D408-D411.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D408-D411
    • Walter, M.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.