-
1
-
-
84865818229
-
Developmental plasticity and genotype-environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae)
-
Shirokawa Y, Karino K, Mayama S (2012) Developmental plasticity and genotype-environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). European Journal of Phycology 47: 245-253.
-
(2012)
European Journal of Phycology
, vol.47
, pp. 245-253
-
-
Shirokawa, Y.1
Karino, K.2
Mayama, S.3
-
2
-
-
84879794063
-
An inordinate fondness? The number, distributions, and origins of diatom species
-
Mann DG, Vanormelingen P (2013) An inordinate fondness? The number, distributions, and origins of diatom species. Journal of Eukaryotic Microbiology 60: 414-420.
-
(2013)
Journal of Eukaryotic Microbiology
, vol.60
, pp. 414-420
-
-
Mann, D.G.1
Vanormelingen, P.2
-
3
-
-
84892859078
-
Oxylipin diversity in the diatom family Leptocylindraceae reveals DHA derivatives in marine diatoms
-
Nanjappa D, d'Ippolito G, Gallo C, Zingone A, Fontana A (2014) Oxylipin diversity in the diatom family Leptocylindraceae reveals DHA derivatives in marine diatoms Marine Drugs 7: 368-384.
-
(2014)
Marine Drugs
, vol.7
, pp. 368-384
-
-
Nanjappa, D.1
D'Ippolito, G.2
Gallo, C.3
Zingone, A.4
Fontana, A.5
-
4
-
-
84859392342
-
Functional diversity in cryptic species of Chaetoceros socialis Lauder (Bacillariophyceae)
-
Degerlund M, Huseby S, Zingone A, Sarno D, Landfald B (2012) Functional diversity in cryptic species of Chaetoceros socialis Lauder (Bacillariophyceae). Journal of Plankton Research 34: 416-431.
-
(2012)
Journal of Plankton Research
, vol.34
, pp. 416-431
-
-
Degerlund, M.1
Huseby, S.2
Zingone, A.3
Sarno, D.4
Landfald, B.5
-
5
-
-
84870866491
-
Metabolic fingerprinting reveals differences between northern and southern strains of the cryptic diatom Chaetoceros socialis
-
Huseby S, Degerlund M, Zingone A, Hansen E (2012) Metabolic fingerprinting reveals differences between northern and southern strains of the cryptic diatom Chaetoceros socialis. European Journal of Phycology 47: 480-489.
-
(2012)
European Journal of Phycology
, vol.47
, pp. 480-489
-
-
Huseby, S.1
Degerlund, M.2
Zingone, A.3
Hansen, E.4
-
6
-
-
40949157578
-
Global Diversity and Biogeography of Skeletonema Species (Bacillariophyta)
-
DOI 10.1016/j.protis.2007.09.004, PII S1434461007000739
-
Kooistra WHCF, Sarno D, Balzano S, Gu H, Andersen RA, et al. (2008) Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist 159: 177-193. (Pubitemid 351406512)
-
(2008)
Protist
, vol.159
, Issue.2
, pp. 177-193
-
-
Kooistra, W.H.C.F.1
Sarno, D.2
Balzano, S.3
Gu, H.4
Andersen, R.A.5
Zingone, A.6
-
7
-
-
84884982666
-
A reappraisal of the genus Leptocylindrus (Bacillariophyta), with the addition of three species and the erection of Tenuicylindrus gen. nov
-
Nanjappa D, Kooistra WHCF, Zingone A (2013) A reappraisal of the genus Leptocylindrus (Bacillariophyta), with the addition of three species and the erection of Tenuicylindrus gen. nov. Journal of Phycology 49: 917-936.
-
(2013)
Journal of Phycology
, vol.49
, pp. 917-936
-
-
Nanjappa, D.1
Kooistra, W.H.C.F.2
Zingone, A.3
-
8
-
-
0038221066
-
Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments
-
DOI 10.1128/AEM.69.5.2657-2663.2003
-
Stoeck T, Epstein S (2003) Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Applied and Environmental Microbiology 69: 2657-2663. (Pubitemid 36560342)
-
(2003)
Applied and Environmental Microbiology
, vol.69
, Issue.5
, pp. 2657-2663
-
-
Stoeck, T.1
Epstein, S.2
-
9
-
-
38549141601
-
Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle
-
DOI 10.3354/ame01148
-
McDonald SM, Sarno D, Scanlan DJ, Zingone A (2007) Genetic diversity of eukaryotic ultraphytoplankton in the Gulf of Naples during an annual cycle. Aquatic Microbial Ecology 50: 75-89. (Pubitemid 351154593)
-
(2007)
Aquatic Microbial Ecology
, vol.50
, Issue.1
, pp. 75-89
-
-
McDonald, S.M.1
Sarno, D.2
Scanlan, D.J.3
Zingone, A.4
-
10
-
-
64249118495
-
PCR-Based Diversity estimates of artificial and environmental 18S rRNA gene libraries
-
Potvin M, Lovejoy C (2009) PCR-Based Diversity estimates of artificial and environmental 18S rRNA gene libraries. Journal of Eukaryotic Microbiology 56: 174-181.
-
(2009)
Journal of Eukaryotic Microbiology
, vol.56
, pp. 174-181
-
-
Potvin, M.1
Lovejoy, C.2
-
11
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
DOI 10.1038/nature02340
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43. (Pubitemid 38332350)
-
(2004)
Nature
, vol.428
, Issue.6978
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
12
-
-
71249091315
-
The seasonal structure of microbial communities in the Western English Channel
-
Gilbert JA, Field D, Swift P, Newbold L, Oliver A, et al. (2009) The seasonal structure of microbial communities in the Western English Channel. Environmental Microbiology 11: 3132-3139.
-
(2009)
Environmental Microbiology
, vol.11
, pp. 3132-3139
-
-
Gilbert, J.A.1
Field, D.2
Swift, P.3
Newbold, L.4
Oliver, A.5
-
13
-
-
77951908579
-
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
-
Stoeck T, Bass D, Nebel M, Christen R, Jones MDM, et al. (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Molecular Ecology 19: 21-31.
-
(2010)
Molecular Ecology
, vol.19
, pp. 21-31
-
-
Stoeck, T.1
Bass, D.2
Nebel, M.3
Christen, R.4
Jones, M.D.M.5
-
14
-
-
79960560895
-
Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness
-
Edgcomb V, Orsi W, Bunge J, Jeon S, Christen R, et al. (2011) Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness. ISME Journal 5: 1344-1356.
-
(2011)
ISME Journal
, vol.5
, pp. 1344-1356
-
-
Edgcomb, V.1
Orsi, W.2
Bunge, J.3
Jeon, S.4
Christen, R.5
-
15
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern tropical Pacific. PLoS Biology 5: e77.
-
(2007)
PLoS Biology
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
-
16
-
-
80055082475
-
A holistic approach to marine eco-systems biology
-
Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, et al. (2011) A holistic approach to marine eco-systems biology. PLoS Biology 9: e1001177.
-
(2011)
PLoS Biology
, vol.9
-
-
Karsenti, E.1
Acinas, S.G.2
Bork, P.3
Bowler, C.4
De Vargas, C.5
-
17
-
-
84872840566
-
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
-
Bittner L, Gobet A, Audic S, Romac S, Egge ES, et al. (2013) Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Molecular Ecology 22: 87-101.
-
(2013)
Molecular Ecology
, vol.22
, pp. 87-101
-
-
Bittner, L.1
Gobet, A.2
Audic, S.3
Romac, S.4
Egge, E.S.5
-
18
-
-
84888198932
-
Vampires in the oceans: Predatory cercozoan amoebae in marine habitats
-
Berney C, Romac S, Mahe F, Santini S, Siano R, et al. (2013) Vampires in the oceans: predatory cercozoan amoebae in marine habitats. ISME Journal 7: 2387-2399.
-
(2013)
ISME Journal
, vol.7
, pp. 2387-2399
-
-
Berney, C.1
Romac, S.2
Mahe, F.3
Santini, S.4
Siano, R.5
-
19
-
-
0002116099
-
Studies on marine plankton diatoms. V. Morphology and distribution on Leptocylindrus minimus Gran
-
Hargraves PE (1990) Studies on marine plankton diatoms. V. Morphology and distribution on Leptocylindrus minimus Gran. Nova Hedwigia Beiheft 100: 47-60.
-
(1990)
Nova Hedwigia Beiheft
, vol.100
, pp. 47-60
-
-
Hargraves, P.E.1
-
20
-
-
84884981911
-
-
Bruxelles: Memories du Musée Royal d'Histoire Naturelle de Belgique
-
Meunier A (1915) Microplankton de la mer flamande. Bruxelles: Memories du Musée Royal d'Histoire Naturelle de Belgique. 47 p.
-
(1915)
Microplankton de la Mer Flamande
, pp. 47
-
-
Meunier, A.1
-
21
-
-
84875623291
-
The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
-
Guillou L, Bachar D, Audic S, Bass D, Berney C, et al. (2013) The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Research 41: D597-D604.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Guillou, L.1
Bachar, D.2
Audic, S.3
Bass, D.4
Berney, C.5
-
22
-
-
84867740787
-
Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
-
Logares R, Audic S, Santini S, Pernice MC, de Vargas C, et al. (2012) Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing. ISME Journal 6: 1823-1833.
-
(2012)
ISME Journal
, vol.6
, pp. 1823-1833
-
-
Logares, R.1
Audic, S.2
Santini, S.3
Pernice, M.C.4
De Vargas, C.5
-
23
-
-
68149178616
-
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
-
Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM (2009) A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS ONE 4: e6372.
-
(2009)
PLoS ONE
, vol.4
-
-
Amaral-Zettler, L.A.1
McCliment, E.A.2
Ducklow, H.W.3
Huse, S.M.4
-
24
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
25
-
-
84864489995
-
T-REX: A web server for inferring, validating and visualizing phylogenetic trees and networks
-
Boc A, Diallo AB, Makarenkov V (2012) T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks. Nucleic Acids Research 40: W573-W579.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Boc, A.1
Diallo, A.B.2
Makarenkov, V.3
-
26
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
DOI 10.1093/nar/gki198
-
Katoh K, Kuma K-i, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518. (Pubitemid 40360980)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.-I.2
Toh, H.3
Miyata, T.4
-
27
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
29
-
-
0027055554
-
Signal, noise, and reliability in molecular phylogenetic analyses
-
Hillis DM, Huelsenbeck JP (1992) Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity 83: 189-195. (Pubitemid 23097535)
-
(1992)
Journal of Heredity
, vol.83
, Issue.3
, pp. 189-195
-
-
Hillis, D.M.1
Huelsenbeck, J.P.2
-
30
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
31
-
-
84868007353
-
Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks
-
Huson DH, Scornavacca C (2012) Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks. Systematic Biology.
-
(2012)
Systematic Biology
-
-
Huson, D.H.1
Scornavacca, C.2
-
33
-
-
0030681260
-
The significance of digital gene expression profiles
-
Audic S, Claverie J-M (1997) The significance of digital gene expression profiles. Genome Research 7: 986-995. (Pubitemid 27487763)
-
(1997)
Genome Research
, vol.7
, Issue.10
, pp. 986-995
-
-
Audic, S.1
Claverie, J.-M.2
-
34
-
-
33646583481
-
Diversity and distribution of marine microbial eukaryotes in the arctic ocean and adjacent seas
-
DOI 10.1128/AEM.72.5.3085-3095.2006
-
Lovejoy C, Massana R, Pedrós-Alió C (2006) Diversity and distribution of marine microbial eukaryotes in the Arctic ocean and adjacent seas. Applied and Environmental Microbiology 72: 3085-3095. (Pubitemid 43727954)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.5
, pp. 3085-3095
-
-
Lovejoy, C.1
Massana, R.2
Pedros-Alio, C.3
-
35
-
-
13944265304
-
Diversity in the genus Skeletonema (Bacillariophyceae). II. An assessment of the taxonomy of S. costatum-like species with the description of four new species
-
DOI 10.1111/j.1529-8817.2005.04067.x
-
Sarno D, Kooistra WCHF, Medlin LK, Percopo I, Zingone A (2005) Diversity in the genus Skeletonema (Bacillariophyceae). II. An assessment of the taxonomy of S. costatum-like species, with the description of four new species. Journal of Phycology 41: 151-176. (Pubitemid 40263635)
-
(2005)
Journal of Phycology
, vol.41
, Issue.1
, pp. 151-176
-
-
Sarno, D.1
Kooistra, W.H.C.F.2
Medlin, L.K.3
Percopo, I.4
Zingone, A.5
-
36
-
-
33645532640
-
Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses
-
Lundholm N, Moestrup Ø, Kotaki Y, Hoef-Emden K, Scholin C, et al. (2006) Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses. Journal of Phycology 42: 464-481.
-
(2006)
Journal of Phycology
, vol.42
, pp. 464-481
-
-
Lundholm, N.1
Moestrup, Ø.2
Kotaki, Y.3
Hoef-Emden, K.4
Scholin, C.5
-
37
-
-
33846921368
-
Diversity in the genus Skeletonema (bacillariophyceae): III. Phylogenetic position and morphological variability of Skeletonema costatum and Skeletonema grevillei, with the description of Skeletonema ardens sp. nov.
-
DOI 10.1111/j.1529-8817.2006.00305.x
-
Sarno D, Kooistra WCHF, Balzano S, Hargraves PE, Zingone A (2007) Diversity in the genus Skeletonema (Bacillariophyceae): III. Phylogenetic position and morphological variability of Skeletonema costatum and Skeletonema grevillei, with the description of Skeletonema ardens sp. nov. Journal of Phycology 43: 156-170. (Pubitemid 46232949)
-
(2007)
Journal of Phycology
, vol.43
, Issue.1
, pp. 156-170
-
-
Sarno, D.1
Kooistra, W.H.C.F.2
Balzano, S.3
Hargraves, P.E.4
Zingone, A.5
-
38
-
-
84884191022
-
454 Pyrosequencing to describe microbial eukaryotic community composition, Diversity and relative abundance: A test for marine haptophytes
-
Egge E, Bittner L, Andersen T, Audic S, de Vargas C, et al. (2013) 454 Pyrosequencing to describe microbial eukaryotic community composition, Diversity and relative abundance: A test for marine haptophytes. PLoS ONE 8: e74371.
-
(2013)
PLoS ONE
, vol.8
-
-
Egge, E.1
Bittner, L.2
Andersen, T.3
Audic, S.4
De Vargas, C.5
-
39
-
-
33846131262
-
Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies
-
DOI 10.1128/AEM.01177-06
-
Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, et al. (2007) Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Applied and Environmental Microbiology 73: 278-288. (Pubitemid 46079960)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.1
, pp. 278-288
-
-
Case, R.J.1
Boucher, Y.2
Dahllof, I.3
Holmstrom, C.4
Doolittle, W.F.5
Kjelleberg, S.6
-
40
-
-
84986749944
-
Population dynamics of the spore-forming diatom Leptocylindrus danicus in Narragansett Bay, Rhode Island
-
French III FW, Hargraves PE (1986) Population dynamics of the spore-forming diatom Leptocylindrus danicus in Narragansett Bay, Rhode Island. Journal of Phycology 22: 411-420.
-
(1986)
Journal of Phycology
, vol.22
, pp. 411-420
-
-
French III, F.W.1
Hargraves, P.E.2
-
43
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
DOI 10.1038/nrmicro1341, PII N1341
-
Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, et al. (2006) Microbial biogeography: putting microorganisms on the map. Nature Reviews Microbiology 4: 102-112. (Pubitemid 43158153)
-
(2006)
Nature Reviews Microbiology
, vol.4
, Issue.2
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Ovreas, L.13
Reysenbach, A.-L.14
Smith, V.H.15
Staley, J.T.16
-
44
-
-
33646748900
-
Dispersal limitations matter for microbial morphospecies
-
Telford RJ, Vandvik V, Birks HJB (2006) Dispersal limitations matter for microbial morphospecies. Science 312: 1015.
-
(2006)
Science
, vol.312
, pp. 1015
-
-
Telford, R.J.1
Vandvik, V.2
Birks, H.J.B.3
-
45
-
-
0042242559
-
Geographic barriers isolate endemic populations of hyperthermophilic archaea
-
DOI 10.1126/science.1086909
-
Whitaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976-978. (Pubitemid 36994812)
-
(2003)
Science
, vol.301
, Issue.5635
, pp. 976-978
-
-
Whitaker, R.J.1
Grogan, D.W.2
Taylor, J.W.3
-
48
-
-
84980243436
-
Studies on marine plankton diatoms. II. Resting spores morphology
-
Hargraves PE (1976) Studies on marine plankton diatoms. II. Resting spores morphology. Journal of Phycology 12: 118-128.
-
(1976)
Journal of Phycology
, vol.12
, pp. 118-128
-
-
Hargraves, P.E.1
-
49
-
-
84985216581
-
Spore formation in the life cycles of the diatoms Chaetoceros diadema and Leptocylindrus danicus
-
French III FW, Hargraves PE (1985) Spore formation in the life cycles of the diatoms Chaetoceros diadema and Leptocylindrus danicus. Journal of Phycology 21: 477-483.
-
(1985)
Journal of Phycology
, vol.21
, pp. 477-483
-
-
French III, F.W.1
Hargraves, P.E.2
-
50
-
-
84879343032
-
Diversity and germination patterns of diatom resting stages at a coastal Mediterranean site
-
Montresor M, Di Prisco C, Sarno D, Margiotta F, Zingone A (2013) Diversity and germination patterns of diatom resting stages at a coastal Mediterranean site. Marine Ecology Progress Series 484: 79-95.
-
(2013)
Marine Ecology Progress Series
, vol.484
, pp. 79-95
-
-
Montresor, M.1
Di Prisco, C.2
Sarno, D.3
Margiotta, F.4
Zingone, A.5
|