Lipid changes after leaf wounding in Arabidopsis thaliana: Expanded lipidomic data form the basis for lipid co-occurrence analysis

Plant Journal

Volumn 80, Issue 4, 2014, Pages 728-743

  Vu, Hieu Sy ^a   Shiva, Sunitha ^a   Roth, Mary R ^a   Tamura, Pamela ^a   Zheng, Lianqing ^a   Li, Maoyin ^b,c   Sarowar, Sujon ^d   Honey, Samuel ^a   McEllhiney, Dedan ^a   Hinkes, Paul ^e   Seib, Lawrence ^f   Williams, Todd D ^f   Gadbury, Gary ^a   Wang, Xuemin ^b,c   Shah, Jyoti ^d   Welti, Ruth ^a  

^a KANSAS STATE UNIVERSITY   (United States)

^b UNIVERSITY OF MISSOURI ST LOUIS   (United States)

^c DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

^d UNIVERSITY OF NORTH TEXAS   (United States)

^e WATERS CORPORATION   (United States)

^f UNIVERSITY OF KANSAS   (United States)

Author keywords

Arabidopsis thaliana; dendrogram; direct infusion triple quadrupole mass spectrometry; glycerolipids; leaf wounding; lipid clustering; lipidomics; oxidized lipids; Spearman's correlation; sterol derivatives; technical advance

Indexed keywords

ACYLATION; ALCOHOLS; ELECTROSPRAY IONIZATION; ENZYMES; MASS SPECTROMETRY; MOLECULAR STRUCTURE; PHOSPHOLIPIDS; PLANTS (BOTANY); CHAINS; OXIDATION; SPECTROMETRY;

ARABIDOPSIS THALIANA; DENDROGRAMS; GLYCEROLIPIDS; LEAF WOUNDING; LIPIDOMICS; OXIDIZED LIPIDS; TECHNICAL ADVANCES; TRIPLE-QUADRUPOLE MASS SPECTROMETRY;

OXIDATION; LIPIDS;

ARABIDOPSIS THALIANA;

GALACTOLIPID; LIPID; PHOSPHATIDIC ACID; PHOSPHOLIPID;

ARABIDOPSIS; CHEMISTRY; ELECTROSPRAY MASS SPECTROMETRY; METABOLISM; PLANT LEAF; PROCEDURES;

ARABIDOPSIS; GALACTOLIPIDS; LIPIDS; PHOSPHATIDIC ACIDS; PHOSPHOLIPIDS; PLANT LEAVES; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 84929044965     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12659     Document Type: Article

References (40)

1. Arisz, S.A., van Wijk, R., Roels, W., Zhu, J.K., Haring, M.A., and, Munnik, T., (2013) Rapid phosphatidic acid accumulation in response to low temperature stress in Arabidopsis is generated through diacylglycerol kinase. Front Plant Sci. 4, 1.
2. Bates, P.D., Ohlrogge, J.B., and, Pollard, M., (2007) Incorporation of newly synthesized fatty acids into cytosolic glycerolipids in pea leaves occurs via acyl editing. J. Biol. Chem. 282, 31206-31216.
3. Bligh, E.G., and, Dyer, W.J., (1959) A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37, 911-917.
4. Buseman, C.M., Tamura, P., Sparks, A.A., et al. (2006) Wounding stimulates the accumulation of glycerolipids containing oxophytodienoic acid and dinor-oxophytodienoic acid in Arabidopsis leaves. Plant Physiol. 142, 28-39.
5. Camacho, D., Fuente, A., and, Mendes, P., (2005) The origin of correlations in metabolomics data. Metabolomics 1, 53-63.
6. Carbonell, P., Lecointre, G., and, Faulon, J.-L., (2011) Origins of specificity and promiscuity in metabolic networks. J. Biol. Chem. 286, 43994-44004.
7. Chaturvedi, R., Krothapalli, K., Makandar, R., Nandi, A., Sparks, A.A., Roth, M.R., Welti, R., and, Shah, J., (2008) Plastid omega3-fatty acid desaturase-dependent accumulation of a systemic acquired resistance inducing activity in petiole exudates of Arabidopsis thaliana is independent of jasmonic acid. Plant J. 54, 106-117.
8. DeBolt, S., Scheible, W.R., Schrick, K., et al. (2009) Mutations in UDP-Glucose:sterol glucosyltransferase in Arabidopsis cause transparent testa phenotype and suberization defect in seeds. Plant Physiol. 151, 78-87.
9. Dunn, W.B., Broadhurst, D., Begley, P., Zelena, E., Francis-McIntyre, S., Anderson, N., Brown, M., Knowles, J.D., Halsall, A., Haselden, J.N., Nicholls, A.W., Wilson, I.D., Kell, D.B., Goodacre, R., and Human Serum Metabolome (HUSERMET) Consortium (2011) Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat. Protoc. 6, 1060-1083. [Correction added on 13 October 2014 after original online publication on 3 October 2014: Dunn et al. () reference author list was completed]
10. Eisen, M.B., Spellman, P.T., Brown, P.O., and, Botstein, D., (1997) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
11. Fan, J., Yan, C., and, Xu, C., (2013) Phospholipid:diacylglycerol acyltransferase-mediated triacylglycerol biosynthesis is crucial for protection against fatty acid-induced cell death in growing tissues of Arabidopsis. Plant J. 76, 930-942.
12. Heinz, E., (1967) On the enzymatic formation of acyl galactosyldiglyceride. Biochim. Biophys. Acta, 144, 333-343.
13. Heinz, E., (1972) Some properties of the acyl galactosyl diglyceride-forming enzyme from leaves. Z. Pflanzenphysiol. 69, 359-376.
14. Huson, D.H., and, Scornavacca, C., (2012) Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst. Biol. 61, 1061-1067.
15. Huson, D.H., Richter, D.C., Rausch, C., Dezulian, T., Franz, M., and, Rupp, R., (2007) Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics, 8, 460.
16. Kelly, A.A., and, Dörmann, P., (2002) DGD2, an Arabidopsis gene encoding a UDP-galactose-dependent digalactosyldiacylglycerol synthase is expressed during growth under phosphate-limiting conditions. J. Biol. Chem. 277, 1166-1173.
17. Kodama, H., Hamada, T., Horiguchi, G., Nishimura, M., and, Iba, K., (1994) Genetic enhancement of cold tolerance by expression of a gene for chloroplast [omega]-3 fatty acid desaturase in transgenic tobacco. Plant Physiol. 105, 601-605.
18. Kunst, L., Browse, J., and, Somerville, C., (1989) A mutant of Arabidopsis deficient in desaturation of palmitic acid in leaf lipids. Plant Physiol. 90, 943-947.
19. Li-Beisson, Y., Shorrosh, B., Beisson, F., et al. (2013) Acyl lipid metabolism. Arabidopsis Book, 11, e0161.
20. Markham, J.E., Li, J., Cahoon, E.B., and, Jaworski, J.G., (2006) Separation and identification of major plant sphingolipid classes from leaves. J. Biol. Chem. 281, 22684-22694.
21. Moellering, E.R., Muthan, B., and, Benning, C., (2010) Freezing tolerance in plants requires lipid remodeling at the outer chloroplast membrane. Science, 330, 226-228.
22. Narváez-Vásquez, J., Florin-Christensen, J., and, Ryan, C.A., (1999) Positional specificity of a phospholipase A activity induced by wounding, systemin, and oligosaccharide elicitors in tomato leaves. Plant Cell, 11, 2249-2260.
23. Nilsson, A.K., Fahlberg, P., Ellerström, M., and, Andersson, M.X., (2012) Oxo-phytodienoic acid (OPDA) is formed on fatty acids esterified to galactolipids after tissue disruption in Arabidopsis thaliana. FEBS Lett. 586, 2483-2487.
24. Nilsson, A.K., Johansson, O.N., Fahlberg, P., Steinhart, F., Gustavsson, M.B., and, Ellerström, M., Andersson, M.X., (2014) Formation of oxidized phosphatidylinositol and 12-oxo-phytodienoic acid containing acylated phosphatidylglycerol during the hypersensitive response in Arabidopsis. Phytochemistry 101, 65-75.
25. Peters, C., Li, M., Narasimhan, R., Roth, M., Welti, R., and, Wang, X., (2010) Non-specific phospholipase C NPC4 promotes response to abscisic acid and tolerance to hyperosmotic stress in Arabidopsis. Plant Cell, 22, 2642-2659.
26. Routaboul, J.M., Fischer, S.F., and, Browse, J., (2000) Trienoic fatty acids are required to maintain chloroplast function at low temperatures. Plant Physiol. 124, 1697-1705.
27. Ryu, S.B., (2004) Phospholipid-derived signaling mediated by phospholipase A in plants. Trends Plant Sci. 9, 229-235.
28. Samarakoon, T., Shiva, S., Lowe, K., Tamura, P., Roth, M.R., and, Welti, R., (2012) Arabidopsis thaliana membrane lipid molecular species and their mass spectral analysis. Methods Mol. Biol. 918, 179-268.
29. Steuer, R., Kurths, J., Fiehn, O., and, Weckwerth, W., (2003) Observing and interpreting correlations in metabolomics networks. Bioinformatics, 19, 1019-1026.
30. Telfer, A., Bollman, K.M., and, Poething, R.S., (1997) Phase change and the regulation of trichome distribution in Arabidopsis thaliana. Development, 124, 645-654.
31. Toledo, M.S., Suzuki, E., Straus, A.H., and, Takahashi, H.K., (1995) Glycolipids from Paracoccidioides brasiliensis. Isolation of a galactofuranose-containing glycolipid reactive with sera of patients with paracoccidioidomycosis. J. Med. Vet. Mycol. 33, 247-251.
32. Toubiana, D., Fernie, A.R., Nikoloski, Z., and, Fait, A., (2013) Network analysis: tackling complex data to study plant metabolism. Trends Biotechnol. 31, 29-36.
33. Troncoso-Ponce, M.A., Cao, X., Yang, Z., and, Ohlrogge, J.B., (2013) Lipid turnover during senescence. Plant Sci. 205-206, 13-19.
34. Vu, H.S., Tamura, P., Galeva, N.A., Chaturvedi, R., Williams, T.D., Wang, X., Shah, J., and, Welti, R., (2012) Direct infusion mass spectrometry of oxylipin-containing Arabidopsis thaliana membrane lipids reveals varied patterns in different stress responses. Plant Physiol. 158, 324-339.
35. Vu, H.S., Roth, M.R., Tamura, P., Samarakoon, T., Shiva, S., Honey, S., Lowe, K., Schmelz, E.A., Williams, T.D., and, Welti, R., (2014) Head-group acylation of monogalactosyldiacylglycerol is a common stress response, and the acyl-galactose acyl composition varies with the plant species and applied stress. Physiol. Plant. 150, 517-528.
36. Welti, R., Li, W., Li, M., Sang, Y., Biesiada, H., Zhou, H.-E., Rajashekar, C.B., Williams, T.D., and, Wang, X., (2002) Profiling membrane lipids in plant stress responses. Role of phospholipase Dα in freezing-induced lipid changes in Arabidopsis. J. Biol. Chem. 277, 31994-32002.
37. Xia, J., Psychogios, N., Young, N., and, Wishart, D.S., (2009) MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucl. Acids Res., 37, W652-W660.
38. Xia, J., Mandal, R., Sinelnikov, I., Broadhurst, D., and, Wishart, D.S., (2012) MetaboAnalyst 2.0-a comprehensive server for metabolomic data analysis. Nucl. Acids Res. 40, W127-W133.
39. Yaeno, T., Matsuda, O., and, Iba, K., (2004) Role of chloroplast trienoic fatty acids in plant disease defense responses. Plant J. 40, 931-941.
40. Zien, C.A., Wang, C., Wang, X., and, Welti, R., (2001) In-vivo substrates and the contribution of the common phospholipase D, PLDa, to wound-induced metabolism of lipids in Arabidopsis. Biochim. Biophys. Acta, 1530, 236-248.