Chemically Induced Fluorescence Switching of Carbon-Dots and Its Multiple Logic Gate Implementation

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Dhenadhayalan, Namasivayam ^a   Lin, King Chuen ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84929012665     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep10012     Document Type: Article

References (43)

1. Li, T., Lohmann, F. & Famulok, M. Interlocked DNA nanostructures controlled by a reversible logic circuit. Nat. Commun. 5, 4940 (2014).
2. Han, D. et al. Nucleic acid based logical systems. Chem. Eur. J. 20, 5866-5873 (2014).
3. Zhang, M., Qu, Z.-B., Ma, H.-Y., Zhou, T. & Shi, G. DNA-based sensitization of Tb3+ luminescence regulated by Ag+and cysteine: use as a logic gate and a H2O2 sensor. Chem. Commun. 50, 4677-4679 (2014).
4. Carell, T. Molecular computing: DNA as a logic operator. Nature 469, 45-46 (2011).
5. Ma, D.-L., He, H.-Z., Chan, D. S.-H. & Leung, C.-H. Simple DNA-based logic gates responding to biomolecules and metal ions. Chem. Sci. 4, 3366-3380 (2013).
6. Zhang, Y.-M., Zhang, L., Liang, R.-P. & Qiu, J.-D. DNA electronic logic gates based on metal-ion-dependent induction of oligonucleotide structural motifs. Chem. Eur. J. 19, 6961-6965 (2013).
7. Gentili, P. L. Boolean and fuzzy logic gates based on the interaction of flindersine with bovine serum albumin and tryptophan. J. Phys. Chem. A. 112, 11992-11997 (2008).
8. Muramatsu, S., Kinbara, K., Taguchi, H., Ishii, N. & Aida, T. Semibiological molecular machine with an implemented AND logic gate for regulation of protein folding. J. Am. Chem. Soc. 128, 3764-3769 (2006).
9. De Silva, A. P. [Molecular logic gates] Supramolecular chemistry: From molecules to nanomaterials. [Gale, P. A. & Steed, J. W. (Ed.)] (John Wiley & Sons, Chichester, UK, 2012).
10. Ecik, E. T. et al. Modular logic gates: Cascading independent logic gates via metal ion signals. Dalton Trans. 43, 67-70 (2014).
11. Kou, S. et al. Fluorescent molecular logic gates using microfluidic devices. Angew. Chem. Int. Ed. 47, 872-876 (2008).
12. Gunnlaugsson, T., Mac Donail, D. A. & Parker, D. Luminescent molecular logic gates: The two-input inhibit (INH) function. Chem. Commun. 93-94 (2000). DOI: 10. 1039/A908951I.
13. Feng, L., Zhao, A., Ren, J. & Qu, X. Lighting up left-handed Z-DNA: Photoluminescent carbon dots induce DNA B to Z transition and perform DNA logic operations. Nucleic Acids Res. 41, 7987-7996 (2013).
14. Wang, Y. & Hu, A. Carbon quantum dots: Synthesis, properties and applications. J. Mater. Chem. C. 2, 6921-6939 (2014).
15. Baker, S. N. & Baker, G. A. Luminescent carbon nanodots: Emergent nanolights. Angew. Chem. Int. Ed. 49, 6726-6744 (2010).
16. Sahu, S., Behera, B., Maiti, T. K. & Mohapatra, S. Simple one-step synthesis of highly luminescent carbon dots from orange juice: Application as excellent bio-imaging agents. Chem. Commun. 48, 8835-8837 (2012).
17. Li, H. et al. Water-soluble fluorescent carbon quantum dots and photocatalyst design. Angew. Chem. Int. Ed. 49, 4430-4434 (2010).
18. Zhu, S. et al. Highly photoluminescent carbon dots for multicolor patterning, sensors, and bioimaging. Angew. Chem. Int. Ed. 52, 3953-3957 (2013).
19. Pu, F., Ren, J. & Qu, X. Plug and play logic gates based on fluorescence switching regulated by self-assembly of nucleotide and lanthanide ions. ACS Appl. Mater. Interfaces 6, 9557-9562 (2014).
20. Guo, J. et al. Multiple logic functions based on small molecular fluorene derivatives and their application in cell imaging. J. Phys. Chem. C. 118, 9368-9376 (2014).
21. Srivastava, P. et al. Selective naked-eye detection of Hg2+through an efficient turn-on photoinduced electron transfer fluorescent probe and its real applications. Anal. Chem. 86, 8693-8699 (2014).
22. Xu, H. et al. A quantum dot-based off-on fluorescent probe for biological detection of zinc ions. Analyst 138, 2181-2191 (2013).
23. Que, E. L., Domaille, D. W. & Chang, C. J. Metals in neurobiology: Probing their chemistry and biology with molecular imaging. Chem. Rev. 108, 1517-1549 (2008).
24. Carter, K. P., Young, A. M. & Palmer, A. E. Fluorescent sensors for measuring metal ions in living systems. Chem. Rev. 114, 4564-4601 (2014).
25. Jiang, P. & Guo, Z. Fluorescent detection of zinc in biological systems: Recent development on the design of chemosensors and biosensors. Coord. Chem. Rev. 248, 205-229 (2004).
26. Beer, P. D. & Hayes, E. J. Transition metal and organometallic anion complexation agents. Coord. Chem. Rev. 240, 167-189 (2003).
27. Fisher, C. R., Childress, J. J., Oremland, R. S. & Bidigare, R. R. The importance of methane and thiosulfate in the metabolism of the bacterial symbionts of two deep-sea mussels. Mar. Biol. 96, 59-71 (1987).
28. Dahwak, S. W. Thiosulfate. J. Chem. Ed. 70, 12-14 (1993).
29. Ravot, G. et al. Thiosulfate reduction, an important physiological feature shared by members of the order thermotogales. Appl. Environ. Microbiol. 61, 2053-2055 (1995).
30. Han, M. S. & Kim, D. H. Naked-eye detection of phosphate ions in water at physiological pH: A remarkably selective and easyto-assemble colorimetric phosphate-sensing probe. Angew. Chem. Int. Ed. 41, 3809-3811 (2002).
31. Zhao, H. X. et al. Highly selective detection of phosphate in very complicated matrixes with an off-on fluorescent probe of europium-adjusted carbon dots. Chem. Commun. 47, 2604-2606 (2011).
32. Hu, Q. et al. Capillary electrophoretic study of amine/carboxylic acid-functionalized carbon Nanodots. J. Chromatogr. A 1304, 234-240 (2013).
33. Song, Y. et al. Investigation into the fluorescence quenching behaviors and applications of carbon dots. Nanoscale 6, 4676-4682 (2014).
34. Dhenadhayalan, N. & Selvaraju, C. Role of photoionization on the dynamics and mechanism of photoinduced electron transfer reaction of coumarin 307 in micelles. J. Phys. Chem. B 116, 4908-4920 (2012).
35. Benesi, H. A. & Hildebrand, J. H. A spectrophotometric investigation of the interaction of iodine with aromatic hydrocarbons. J. Am. Chem. Soc. 71, 2703-2707 (1949).
36. Qu, S., Chen, H., Zheng, X., Cao, J. & Liu, X. Ratiometric fluorescent nanosensor based on water soluble carbon nanodots with multiple sensing capacities. Nanoscale. 5, 5514-5518 (2013).
37. Zhang, Y.-L. et al. Graphitic carbon quantum dots as a fluorescent sensing platform for highly efficient detection of Fe3+ions. RSC Adv. 3, 3733-3738 (2013).
38. Qu, K., Wang, J., Ren, J. & Qu, X. Carbon dots prepared by hydrothermal treatment of dopamine as an effective fluorescent sensing platform for the label-free detection of iron(III) ions and dopamine. Chem. Eur. J. 19, 7243-7249 (2013).
39. Zhang, Z. et al. Quinoline derivative-functionalized carbon dots as a fluorescent nanosensor for sensing and intracellular imaging of Zn2+. J. Mater. Chem. B. 2, 5020-5027 (2014).
40. Guo, J.-H., Kong, D.-M. & Shen, H.-X. Design of a fluorescent DNA IMPLICATION logic gate and detection of Ag + and cysteine with triphenylmethane dye/G-quadruplex complexes. Biosens. Bioelectron. 26, 327-332 (2010).
41. Zhu, J., Zhang, L., Li, T., Dong, S. & Wang, E. Enzyme-free unlabeled DNA logic circuits based on toehold-mediated strand displacement and split G-quadruplex enhanced fluorescence. Adv. Mater. 25, 2440-2444 (2013).
42. Ma, D.-L. et al. Crystal violet as a fluorescent switch-on probe for i-motif: Label-free DNA-based logic gate. Analyst 136, 2692-2696 (2011).
43. Park, K. S., Seo, M. W., Jung, C., Lee, J. Y. & Park, H. G. Simple and universal platform for logic gate operations based on molecular beacon probes. Small 8, 2203-2212 (2012).