SYSBIONS: Nested sampling for systems biology

Bioinformatics

Volumn 31, Issue 4, 2015, Pages 604-605

  Johnsony, Rob ^a   Kirky, Paul ^a   Stumpf, Michael P H ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BAYES THEOREM; BIOLOGICAL MODEL; PROBABILITY; PROCEDURES; SOFTWARE; SYSTEMS BIOLOGY;

ALGORITHMS; BAYES THEOREM; MODELS, BIOLOGICAL; PROBABILITY; SOFTWARE; SYSTEMS BIOLOGY;

EID: 84928991581     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu675     Document Type: Article

References (12)

1. Aitken, S. and Akman, O.E. (2013) Nested sampling for parameter inference in systems biology: application to an exemplar circadian model. BMC Syst. Biol., 7, 72.
2. Burkoff, N.S. et al. (2012) Exploring the energy landscapes of protein folding simulations with Bayesian computation. Biophys. J., 102, 878-886.
3. Burnham, K.P. and Anderson, D.R. (2002) Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach. Springer, New York.
4. Dybowski, R. et al. (2013) Nested sampling for Bayesian model comparison in the context of Salmonella disease dynamics. PLoS One, 8, e82317.
5. Feroz, F. et al. (2009) MultiNest: an efficient and robust Bayesian inference tool for cosmology and particle physics. Mon. Not. R. Astron. Soc., 398, 1601-1614.
6. Kirk, P. et al. (2013) Model selection in systems and synthetic biology. Curr. Opin. Biotech., 21, 1-8.
7. Liepe, J. et al. (2010) ABC-SysBio-approximate Bayesian computation in Python with GPU support. Bioinformatics, 26, 1797-1799.
8. Mukherjee, P. et al. (2006) A nested sampling algorithm for cosmological model selection. Astrophys. J., 638, L51-L54.
9. Pullen, N. and Morris, R.J. (2014) Bayesian model comparison and parameter inference in systems biology using nested sampling. PLoS One, 9, e88419.
10. Rodriguez, N. et al. (2007) SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML). BMC Bioinformatics, 8, 79.
11. Sivia, D. and Skilling, J. (2006) Data Analysis: A Bayesian Tutorial. Oxford University Press, Oxford.
12. Skilling, J. (2006) Nested sampling for general Bayesian computation. Bayesian Anal., 1, 833-860.