Specificity of signal-binding via non-AHL LuxR-type receptors

PLoS ONE

Volumn 10, Issue 4, 2015, Pages

  Brameyer, Sophie ^a   Heermann, Ralf ^a  

^a UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

2 PYRONE DERIVATIVE; AMINO ACID; LIGAND; LUXI SYNTHASE; N ACYLHOMOSERINE LACTONE; SYNTHETASE; TRANSCRIPTION FACTOR LUXR; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; GAMMA BUTYROLACTONE DERIVATIVE; LUXI PROTEIN, BACTERIA; LUXR AUTOINDUCER BINDING PROTEINS; REPRESSOR PROTEIN; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; CELL COMMUNICATION; CONTROLLED STUDY; GENE EXPRESSION; GENETIC CONSERVATION; GRAM NEGATIVE BACTERIUM; LIGAND BINDING; NONHUMAN; PHOTORHABDUS; PHOTORHABDUS ASYMBIOTICA; PHOTORHABDUS LUMINESCENS; PROTEIN BINDING; PROTEIN MOTIF; PROTEOBACTERIA; QUORUM SENSING; SIGNAL DETECTION; SPECIES DIFFERENCE; BIOSYNTHESIS; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM;

NEGIBACTERIA; PHOTORHABDUS; PHOTORHABDUS ASYMBIOTICA; PHOTORHABDUS LUMINESCENS; PROTEOBACTERIA;

ACYL-BUTYROLACTONES; AMINO ACID MOTIFS; BACTERIAL PROTEINS; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION, BACTERIAL; LIGANDS; PHOTORHABDUS; QUORUM SENSING; REPRESSOR PROTEINS; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

EID: 84928792613     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0124093     Document Type: Article

References (26)

1. Waters CM, Bassler BL. Quorum sensing: cell-to-cell communication in bacteria. Annu Rev Cell Dev Biol. 2005; 21: 319-346. doi: 10.1146/annurev.cellbio.21.012704.131001 PMID: 16212498
2. Patankar AV, González JE. Orphan LuxR regulators of quorum sensing. FEMS Microbiol Rev. 2009; 33: 739-756. doi: 10.1111/j.1574-6976.2009.00163.x PMID: 19222586
3. Subramoni S, Venturi V. LuxR-family "solos": bachelor sensors/regulators of signalling molecules. Microbiology. 2009; 155: 1377-1385. doi: 10.1099/mic.0.026849-0 PMID: 19383698
4. Brameyer S, Kresovic D, Bode HB, Heermann R. LuxR solos in Photorhabdus species. Front Cell Infect Microbiol. 2014; 4: 1-23. doi: 10.3389/fcimb.2014.00166 PMID: 24478989
5. Brameyer S, Kresovic D, Bode HB, Heermann R. Dialkylresorcinols as bacterial signaling molecules. PNAS USA. 2015; 112: 572-577. 201417685. doi: 10.1073/pnas.1417685112 PMID: 25550519
6. Brachmann AO, Brameyer S, Kresovic D, Hitkova I, Kopp Y, et al. Pyrones as bacterial signaling molecules. Nat Chem Biol. 2013; 9: 573-578. doi: 10.1038/nchembio.1295 PMID: 23851573
7. Fuchs SW, Bozhüyük KAJ, Kresovic D, Grundmann F, Dill V, et al. Formation of 1,3-Cyclohexanediones and Resorcinols Catalyzed by a Widely Occuring Ketosynthase. Angew Chem Int Ed. 2013; 52: 4108-4112. doi: 10.1002/anie.201210116 PMID: 23423827
8. Shadel GS, Young R, Baldwin TO. Use of regulated cell lysis in a lethal genetic selection in Escherichia coli: Identification of the autoinducer-binding region of the LuxR Protein from Vibrio fischeri ATCC 7744. J Bacteriol. 1990; 172: 3980-3987. PMID: 2141835
9. Welch M, Todd DE, Whitehead NA, McGowan SJ, Bycroft BW, et al. N-acyl homoserine lactone binding to the CarR receptor determines quorum-sensing specificity in Erwinia. EMBO J. 2000; 19: 631-641. PMID: 10675332
10. Zhu J, Winans SC. The quorum-sensing transcriptional regulator TraR requires its cognate signaling ligand for protein folding, protease resistance, and dimerization. PNAS USA. 2001; 98: 1507-1512. PMID: 11171981
11. Nasser W, Reverchon S. New insights into the regulatory mechanisms of the LuxR family of quorum sensing regulators. Anal Bioanal Chem. 2006; 387: 381-390. doi: 10.1007/s00216-006-0702-0 PMID: 16953322
12. Vannini A, Volpari C, Gargioli C, Muraglia E, Cortese R, et al. The crystal structure of the quorum sensing protein TraR bound to its autoinducer and target DNA. EMBO J. 2002; 21: 4393-4401. PMID: 12198141
13. Woodcock DM, Crowther PJ, Doherty J, Jefferson S, DeCruz E, et al. Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res. 1989; 17: 3469-3478. PMID: 2657660
14. Guzman LM, Belin D, Carson MJ, Beckwith J. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol. 1995; 177: 4121-4130. PMID: 7608087
15. Sambrook J, Russel DW. Molecular Cloning - A Laboratory Manual. Cold Spring Harbour Laboratory Press. 2001; Cold Spring Harbour, New York.
16. Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970; 227: 680-685. doi: 10.1016/j.fgb.2010.11.011 PMID: 5432063
17. Weber K, Osborn M. The reliability of molecular weight determinations by dodecyl sulfate-polyacrylamide gel electrophoresis. J Biol Chem. 1969; 244: 4406-4412. PMID: 5806584
18. Chugani S, Greenberg EP. An evolving perspective on the Pseudomonas aeruginosa orphan quorum sensing regulator QscR. Front Cell Infect Microbiol. 2014; 4: 1-7. doi: 10.3389/fcimb.2014.00152/abstract PMID: 24478989
19. Churchill MEA, Chen L. Structural basis of acyl-homoserine lactone-dependent signaling. Chem Rev. 2011; 111: 68-85. doi: 10.1021/cr1000817 PMID: 21125993
20. González JF, Patel HK. A novel widespread interkingdom signaling circuit. Trends Plant Sci. 2013; 18: 167-174. doi: 10.1016/j.tplants.2012.09.007 PMID: 23089307
21. Kim T, Duong T, Wu C, Choi J, Lan N, et al. Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor. Acta Cryst. 2013; 70: 694-707. doi: 10.1107/S1399004713032355
22. Luo Z-Q, Smyth AJ, Gao P, Qin Y, Farrand SK. Mutational analysis of TraR: Correlating function with molecular structure of a quorum-sensing transcriptional activator. J Biol Chem. 2003; 278: 13173-13182. doi: 10.1074/jbc.M210035200 PMID: 12569101
23. Trott AE, Stevens AM. Amino acid residues in LuxR critical for its mechanism of transcriptional activation during quorum sensing in Vibrio fischeri. J Bacteriol. 2001; 183: 387-392. doi: 10.1128/JB.183.1.387-392.2001 PMID: 11114940
24. Koch B. The LuxR receptor: the sites of interaction with quorum-sensing signals and inhibitors. Microbiology. 2005; 151: 3589-3602. doi: 10.1099/mic.0.27954-0 PMID: 16272381
25. Letunic I, Doerks T, Bork P. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res. 2012; 40: D302-D305. doi: 10.1093/nar/gkr931 PMID: 22053084
26. Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, et al. ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 2012; 40: W597-W603. doi: 10.1093/nar/gks400 PMID: 22661580