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Volumn 8, Issue 1, 2015, Pages

Dynamic expression of miRNAs across immature and adult stages of the malaria mosquito Anopheles stephensi

Author keywords

Antagomir; Degradome sequencing; microRNA; Mosquito development; NGS

Indexed keywords

ANTAGOMIR; MICRORNA; MICRORNA 989; UNCLASSIFIED DRUG; RNA; TRANSCRIPTOME;

EID: 84928749449     PISSN: None     EISSN: 17563305     Source Type: Journal    
DOI: 10.1186/s13071-015-0772-y     Document Type: Article
Times cited : (33)

References (41)
  • 2
    • 79957538965 scopus 로고    scopus 로고
    • Control of larval-pupal-adult molt in the moth Sesamia nonagrioides by juvenile hormone and ecdysteroids
    • 1:CAS:528:DC%2BC3MXmslOqsrY%3D 21315078
    • Perez-Hedo M, Goodman WG, Schafellner C, Martini A, Sehnal F, Eizaquirre M, et al. Control of larval-pupal-adult molt in the moth Sesamia nonagrioides by juvenile hormone and ecdysteroids. J Insect Physiol. 2011;57(5):602-7.
    • (2011) J Insect Physiol , vol.57 , Issue.5 , pp. 602-7
    • Perez-Hedo, M.1    Goodman, W.G.2    Schafellner, C.3    Martini, A.4    Sehnal, F.5    Eizaquirre, M.6
  • 3
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • 1:CAS:528:DC%2BD2cXlslemtrs%3D 15200956
    • Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell. 2004;14(6):787-99.
    • (2004) Mol Cell , vol.14 , Issue.6 , pp. 787-99
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 4
    • 50949097481 scopus 로고    scopus 로고
    • An insect virus-encoded microRNA regulates viral replication
    • 2546896 1:CAS:528:DC%2BD1cXhtVyktbrE 18614632
    • Hussain M, Taft RJ, Asgari S. An insect virus-encoded microRNA regulates viral replication. J Virol. 2008;82(18):9164-70.
    • (2008) J Virol , vol.82 , Issue.18 , pp. 9164-70
    • Hussain, M.1    Taft, R.J.2    Asgari, S.3
  • 6
    • 34547960488 scopus 로고    scopus 로고
    • MicroRNA functions
    • 1:CAS:528:DC%2BD2sXhtlartr3M 17506695
    • Bushati N, Cohen SM. microRNA functions. Annu Rev Cell Dev Biol. 2007;23:175-205.
    • (2007) Annu Rev Cell Dev Biol , vol.23 , pp. 175-205
    • Bushati, N.1    Cohen, S.M.2
  • 7
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • 1:CAS:528:DC%2BD2cXhtVals7o%3D 14744438
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116(2):281-97.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-97
    • Bartel, D.P.1
  • 8
    • 84893753522 scopus 로고    scopus 로고
    • Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development
    • 3888459 24421911
    • Shrinet J, Jain S, Jain J, Bhatnagar RK, Sunil S. Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development. PLoS Negl Trop Dis. 2014;8(1):e2616.
    • (2014) PLoS Negl Trop Dis , vol.8 , Issue.1 , pp. 2616
    • Shrinet, J.1    Jain, S.2    Jain, J.3    Bhatnagar, R.K.4    Sunil, S.5
  • 9
    • 84901421640 scopus 로고    scopus 로고
    • Blood feeding and Plasmodium infection alters the miRNome of Anopheles stephensi
    • 4035286 24866389
    • Jain S, Rana V, Shrinet J, Sharma A, Tridibes A, Sunil S, et al. Blood feeding and Plasmodium infection alters the miRNome of Anopheles stephensi. PLoS One. 2014;9(5):e98402.
    • (2014) PLoS One , vol.9 , Issue.5 , pp. 98402
    • Jain, S.1    Rana, V.2    Shrinet, J.3    Sharma, A.4    Tridibes, A.5    Sunil, S.6
  • 10
    • 77949470329 scopus 로고    scopus 로고
    • Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    • 2834634 20167119
    • Skalsky RL, Vanlandingham DL, Scholle F, Cullen BR HSa. Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus. BMC Genomics. 2010;11:119.
    • (2010) BMC Genomics , vol.11 , pp. 119
    • Skalsky, R.L.1    Vanlandingham, D.L.2    Scholle, F.3    Cullen Br, H.4
  • 11
    • 36749036028 scopus 로고    scopus 로고
    • Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
    • 2175301 1:CAS:528:DC%2BD2sXhtlOru7vP 17933784
    • Winter F, Edaye S, Hüttenhofer A, Brunel C. Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion. Nucleic Acids Res. 2007;35(20):6953-62.
    • (2007) Nucleic Acids Res , vol.35 , Issue.20 , pp. 6953-62
    • Winter, F.1    Edaye, S.2    Hüttenhofer, A.3    Brunel, C.4
  • 12
    • 78651061516 scopus 로고    scopus 로고
    • MicroRNA miR-275 is indispensable for blood digestion and egg development in the mosquito Aedes aegypti
    • 3012520 1:CAS:528:DC%2BC3MXkt1KntQ%3D%3D 21115818
    • Bryant B, Macdonald W, Raikhel AS. microRNA miR-275 is indispensable for blood digestion and egg development in the mosquito Aedes aegypti. Proc Natl Acad Sci U S A. 2010;107(52):22391-8.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.52 , pp. 22391-8
    • Bryant, B.1    Macdonald, W.2    Raikhel, A.S.3
  • 13
    • 84881148266 scopus 로고    scopus 로고
    • Functional characterization of three MicroRNAs of the Asian tiger mosquito, Aedes albopictus
    • 3750763 1:CAS:528:DC%2BC3sXhtlGjtb7O 23924583
    • Puthiyakunnon S, Yao Y, Li Y, Gu J, Peng H, Chen X. Functional characterization of three MicroRNAs of the Asian tiger mosquito, Aedes albopictus. Parasit Vectors. 2013;6(1):230.
    • (2013) Parasit Vectors , vol.6 , Issue.1 , pp. 230
    • Puthiyakunnon, S.1    Yao, Y.2    Li, Y.3    Gu, J.4    Peng, H.5    Chen, X.6
  • 14
    • 84899687996 scopus 로고    scopus 로고
    • Identification and characterization of the expression profile of microRNAs in Anopheles anthropophagus
    • 4022070 24690438
    • Liu W, Huang H, Xing C, Li C, Tan F, Liang S. Identification and characterization of the expression profile of microRNAs in Anopheles anthropophagus. Parasit Vectors. 2014;7:159.
    • (2014) Parasit Vectors , vol.7 , pp. 159
    • Liu, W.1    Huang, H.2    Xing, C.3    Li, C.4    Tan, F.5    Liang, S.6
  • 15
    • 84929997510 scopus 로고    scopus 로고
    • MicroRNAs of two medically important mosquito species: Aedes aegypti and Anopheles stephensi
    • Hu W, Criscione F, Liang S, Tu Z. MicroRNAs of two medically important mosquito species: Aedes aegypti and Anopheles stephensi. Insect Mol Biol, 2014
    • (2014) Insect Mol Biol
    • Hu, W.1    Criscione, F.2    Liang, S.3    Tu, Z.4
  • 16
    • 45749155980 scopus 로고    scopus 로고
    • Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi
    • 2430712 18500992
    • Mead EA, Tu Z. Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi. BMC Genomics. 2008;9:244.
    • (2008) BMC Genomics , vol.9 , pp. 244
    • Mead, E.A.1    Tu, Z.2
  • 18
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 2690996 19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25.
    • (2009) Genome Biol , vol.10 , Issue.3 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 19
    • 33846056835 scopus 로고    scopus 로고
    • FRNAdb: A platform for mining/annotating functional RNA candidates from non-coding RNA sequences
    • 1669753 1:CAS:528:DC%2BD2sXivFGktA%3D%3D 17099231
    • Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, et al. fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. Nucleic Acids Res. 2007;35(Database issue):D145-8.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE , pp. 145-8
    • Kin, T.1    Yamada, K.2    Terai, G.3    Okida, H.4    Yoshinari, Y.5    Ono, Y.6
  • 20
    • 84858286227 scopus 로고    scopus 로고
    • VectorBase: Improvements to a bioinformatics resource for invertebrate vector genomics
    • 3245112 1:CAS:528:DC%2BC3MXhs12htbzL 22135296
    • Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, Hughes DS, et al. VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. Nucleic Acids Res. 2012;40(Database issue):D729-34.
    • (2012) Nucleic Acids Res , vol.40 , Issue.DATABASE ISSUE , pp. 729-34
    • Megy, K.1    Emrich, S.J.2    Lawson, D.3    Campbell, D.4    Dialynas, E.5    Hughes, D.S.6
  • 22
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: MicroRNA target prediction easy, fast and flexible
    • 1538877 16845047
    • Kruger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res. 2006;34(Web Server issue):W451-4.
    • (2006) Nucleic Acids Res , vol.34 , Issue.WEB SERVER ISSUE , pp. 451-4
    • Kruger, J.1    Rehmsmeier, M.2
  • 23
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • 1:CAS:528:DC%2BD1cXhsFCkurnI
    • da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4(1):44-57.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • Da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 84864459173 scopus 로고    scopus 로고
    • PAREsnip: A tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
    • 3401462 1:CAS:528:DC%2BC38XhtFSlsL7F 22467211
    • Folkes L, Moxon S, Woolfenden HC, Stocks MB, Szittya G, Dalmay T, et al. PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Res. 2012;40(13):e103.
    • (2012) Nucleic Acids Res , vol.40 , Issue.13 , pp. 103
    • Folkes, L.1    Moxon, S.2    Woolfenden, H.C.3    Stocks, M.B.4    Szittya, G.5    Dalmay, T.6
  • 25
    • 84907787949 scopus 로고    scopus 로고
    • Mosquito-specific microRNA-1174 targets serine hydroxymethyltransferase to control key functions in the gut
    • 4209991 1:CAS:528:DC%2BC2cXhsFyhtbjJ 25246546
    • Liu S, Lucas KJ, Roy S, Ha J, Raikhel AS. Mosquito-specific microRNA-1174 targets serine hydroxymethyltransferase to control key functions in the gut. Proc Natl Acad Sci U S A. 2014;111(40):14460-5.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.40 , pp. 14460-5
    • Liu, S.1    Lucas, K.J.2    Roy, S.3    Ha, J.4    Raikhel, A.S.5
  • 26
    • 0037418839 scopus 로고    scopus 로고
    • Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • 1:CAS:528:DC%2BD3sXjtVWqsL0%3D 12679032
    • Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM. Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell. 2003;113(1):25-36.
    • (2003) Cell , vol.113 , Issue.1 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 27
    • 70349093118 scopus 로고    scopus 로고
    • A role for microRNAs in the Drosophila circadian clock
    • 2751990 1:CAS:528:DC%2BD1MXht1ersbvN 19696147
    • Kadener S, Menet JS, Sugino K, Horwich MD, Weissbein U, Nawathean P, et al. A role for microRNAs in the Drosophila circadian clock. Genes Dev. 2009;23(18):2179-91.
    • (2009) Genes Dev , vol.23 , Issue.18 , pp. 2179-91
    • Kadener, S.1    Menet, J.S.2    Sugino, K.3    Horwich, M.D.4    Weissbein, U.5    Nawathean, P.6
  • 28
    • 71149108895 scopus 로고    scopus 로고
    • Conserved MicroRNA miR-8/miR-200 and its target USH/FOG2 control growth by regulating PI3K
    • 1:CAS:528:DC%2BC3cXhslartrw%3D 20005803
    • Hyun S, Lee JH, Jin H, Nam J, Namkoong B, Lee G, et al. Conserved MicroRNA miR-8/miR-200 and its target USH/FOG2 control growth by regulating PI3K. Cell. 2009;139(6):1096-108.
    • (2009) Cell , vol.139 , Issue.6 , pp. 1096-108
    • Hyun, S.1    Lee, J.H.2    Jin, H.3    Nam, J.4    Namkoong, B.5    Lee, G.6
  • 29
    • 34848927455 scopus 로고    scopus 로고
    • The conserved microRNA miR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila
    • 1:CAS:528:DC%2BD2sXht1CntLnL 17923093
    • Karres JS, Hilgers V, Carrera I, Treisman J, Cohen SM. The conserved microRNA miR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila. Cell. 2007;131(1):136-45.
    • (2007) Cell , vol.131 , Issue.1 , pp. 136-45
    • Karres, J.S.1    Hilgers, V.2    Carrera, I.3    Treisman, J.4    Cohen, S.M.5
  • 30
    • 84964697014 scopus 로고    scopus 로고
    • MiR-281, an abundant midgut-specific miRNA of the vector mosquito Aedes albopictus enhances dengue virus replication
    • 4212107 25331963
    • Zhou Y, Liu Y, Yan H, Li Y, Zhang H, Xu J, et al. miR-281, an abundant midgut-specific miRNA of the vector mosquito Aedes albopictus enhances dengue virus replication. Parasit Vectors. 2014;7(1):488.
    • (2014) Parasit Vectors , vol.7 , Issue.1 , pp. 488
    • Zhou, Y.1    Liu, Y.2    Yan, H.3    Li, Y.4    Zhang, H.5    Xu, J.6
  • 31
  • 32
    • 45849084987 scopus 로고    scopus 로고
    • Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs
    • 2736146 1:CAS:528:DC%2BD1cXotlCqtrk%3D 18571409
    • Caygill EE, Johnston LA. Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs. Curr Biol. 2008;18(13):943-50.
    • (2008) Curr Biol , vol.18 , Issue.13 , pp. 943-50
    • Caygill, E.E.1    Johnston, L.A.2
  • 33
    • 45349099216 scopus 로고    scopus 로고
    • Drosophila let-7 microRNA is required for remodeling of the neuromusculature during metamorphosis
    • 2428057 1:CAS:528:DC%2BD1cXnvVWmsb8%3D 18559475
    • Sokol NS, Xu P, Jan YN, Ambros V. Drosophila let-7 microRNA is required for remodeling of the neuromusculature during metamorphosis. Genes Dev. 2008;22(12):1591-6.
    • (2008) Genes Dev , vol.22 , Issue.12 , pp. 1591-6
    • Sokol, N.S.1    Xu, P.2    Jan, Y.N.3    Ambros, V.4
  • 34
    • 29244437868 scopus 로고    scopus 로고
    • A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye
    • 1:CAS:528:DC%2BD28XktlWitA%3D%3D 16377567
    • Li X, Carthew RW. A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye. Cell. 2005;123(7):1267-77.
    • (2005) Cell , vol.123 , Issue.7 , pp. 1267-77
    • Li, X.1    Carthew, R.W.2
  • 35
    • 64249144494 scopus 로고    scopus 로고
    • A microRNA imparts robustness against environmental fluctuation during development
    • 2674871 1:CAS:528:DC%2BD1MXmvVahsr4%3D 19379693
    • Li X, Cassidy JJ, Reinke CA, Fischboeck S, Carthew RW. A microRNA imparts robustness against environmental fluctuation during development. Cell. 2009;137(2):273-82.
    • (2009) Cell , vol.137 , Issue.2 , pp. 273-82
    • Li, X.1    Cassidy, J.J.2    Reinke, C.A.3    Fischboeck, S.4    Carthew, R.W.5
  • 36
    • 0037790717 scopus 로고    scopus 로고
    • Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
    • 1:CAS:528:DC%2BD3sXks1aktbg%3D 12812784
    • Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V. Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity. Dev Biol. 2003;259(1):9-18.
    • (2003) Dev Biol , vol.259 , Issue.1 , pp. 9-18
    • Sempere, L.F.1    Sokol, N.S.2    Dubrovsky, E.B.3    Berger, E.M.4    Ambros, V.5
  • 37
    • 84862776753 scopus 로고    scopus 로고
    • The microRNA miR-34 modulates ageing and neurodegeneration in Drosophila
    • 3326599 1:CAS:528:DC%2BC38XisVKrsLc%3D 22343898
    • Liu N, Landreh M, Cao K, Abe M, Hendriks GJ, Kennerdell JR, et al. The microRNA miR-34 modulates ageing and neurodegeneration in Drosophila. Nature. 2012;482(7386):519-23.
    • (2012) Nature , vol.482 , Issue.7386 , pp. 519-23
    • Liu, N.1    Landreh, M.2    Cao, K.3    Abe, M.4    Hendriks, G.J.5    Kennerdell, J.R.6
  • 38
    • 73549112663 scopus 로고    scopus 로고
    • MiR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only
    • 2812678 1:CAS:528:DC%2BC3cXnvFOgsw%3D%3D 19944676
    • Bejarano F, Smibert P, Lai EC. miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only. Dev Biol. 2010;338(1):63-73.
    • (2010) Dev Biol , vol.338 , Issue.1 , pp. 63-73
    • Bejarano, F.1    Smibert, P.2    Lai, E.C.3
  • 39
    • 60549115223 scopus 로고    scopus 로고
    • Drosophila mir-9a regulates wing development via fine-tuning expression of the LIM only factor, dLMO
    • 19162004
    • Asmar J, Abdesselem H, Heitzler P. Drosophila mir-9a regulates wing development via fine-tuning expression of the LIM only factor, dLMO. Dev Biol. 2009;327(2):487-96.
    • (2009) Dev Biol , vol.327 , Issue.2 , pp. 487-96
    • Asmar, J.1    Abdesselem, H.2    Heitzler, P.3
  • 40
    • 84908146594 scopus 로고    scopus 로고
    • Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense
    • 1:CAS:528:DC%2BC2cXhs1Gnsb7K 25131375
    • Liu N, Tu L, Tang W, Gao W, Lindsey K, Zhang X. Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense. Plant J. 2014;80(2):331-44.
    • (2014) Plant J , vol.80 , Issue.2 , pp. 331-44
    • Liu, N.1    Tu, L.2    Tang, W.3    Gao, W.4    Lindsey, K.5    Zhang, X.6
  • 41
    • 84892421877 scopus 로고    scopus 로고
    • Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing
    • 3901417 24422852
    • Liu H, Qin C, Chen Z, Zuo T, Yang X, Zhou H, et al. Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing. BMC Genomics. 2014;15:25.
    • (2014) BMC Genomics , vol.15 , pp. 25
    • Liu, H.1    Qin, C.2    Chen, Z.3    Zuo, T.4    Yang, X.5    Zhou, H.6


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