-
1
-
-
17244380380
-
A survey of current work in biomedical text mining
-
Cohen AM, Hersh WR. A survey of current work in biomedical text mining. Briefings in Bioinf. 2005; 6(1):57-71.
-
(2005)
Briefings in Bioinf.
, vol.6
, Issue.1
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
2
-
-
22244459539
-
Text-mining and information-retrieval services for molecular biology
-
Krallinger M, Valencia A. Text-mining and information-retrieval services for molecular biology. Genome Biol. 2005; 6(7):224.
-
(2005)
Genome Biol.
, vol.6
, Issue.7
, pp. 224
-
-
Krallinger, M.1
Valencia, A.2
-
3
-
-
84900861593
-
Biological network extraction from scientific literature: state of the art and challenges
-
Li C, Liakata M, Rebholz-Schuhmann D. Biological network extraction from scientific literature: state of the art and challenges. Briefings in Bioinf. 2014; 15(5):856-77.
-
(2014)
Briefings in Bioinf.
, vol.15
, Issue.5
, pp. 856-877
-
-
Li, C.1
Liakata, M.2
Rebholz-Schuhmann, D.3
-
4
-
-
8444226720
-
Term identification in the biomedical literature
-
Krauthammer M, Nenadic G. Term identification in the biomedical literature. J Biomed Inform. 2004; 37(6):512-26.
-
(2004)
J Biomed Inform.
, vol.37
, Issue.6
, pp. 512-526
-
-
Krauthammer, M.1
Nenadic, G.2
-
6
-
-
84856376731
-
Enhancing clinical concept extraction with distributional semantics
-
Jonnalagadda S, Cohen T, Wu S, Gonzalez G. Enhancing clinical concept extraction with distributional semantics. J Biomed Informatics. 2012; 45(1):129-40.
-
(2012)
J Biomed Informatics
, vol.45
, Issue.1
, pp. 129-140
-
-
Jonnalagadda, S.1
Cohen, T.2
Wu, S.3
Gonzalez, G.4
-
7
-
-
84916604281
-
Towards a mixed approach to extract biomedical terms from text corpus
-
Ventura JAL, Jonquet C, Roche M, Teisseire M. Towards a mixed approach to extract biomedical terms from text corpus. Int J Knowledge Discovery Bioinf. 2014; 4(1):1-15.
-
(2014)
Int J Knowledge Discovery Bioinf.
, vol.4
, Issue.1
, pp. 1-15
-
-
Ventura, J.A.L.1
Jonquet, C.2
Roche, M.3
Teisseire, M.4
-
8
-
-
0036706214
-
Rutabaga by any other name: extracting biological names
-
Hirschman L, Morgan AA, Yeh AS. Rutabaga by any other name: extracting biological names. J Biomed Inform. 2002; 35(4):247-59.
-
(2002)
J Biomed Inform.
, vol.35
, Issue.4
, pp. 247-259
-
-
Hirschman, L.1
Morgan, A.A.2
Yeh, A.S.3
-
9
-
-
2442654362
-
Biological nomenclatures: a source of lexical knowledge and ambiguity
-
Tuason O, Chen L, Liu H, Blake JA, Friedman C. Biological nomenclatures: a source of lexical knowledge and ambiguity. In: Proceedings of the Pacific Symposium on Biocomputing: 2004. p. 238-49.
-
(2004)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 238-249
-
-
Tuason, O.1
Chen, L.2
Liu, H.3
Blake, J.A.4
Friedman, C.5
-
10
-
-
0035752429
-
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program
-
Aronson A.R.
-
Aronson AR. Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. In: Proceedings of the Pacific Symposium on Biocomputing: 2001. p. 17-21.
-
(2001)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 17-21
-
-
-
11
-
-
8444237142
-
A methodology for automatic term recognition
-
Stroudsburg, PA, USA: Association for Computational Linguistics
-
Ananiadou S. A methodology for automatic term recognition. In: Proceedings of the 15th Conference on Computational Linguistics - Volume 2. Stroudsburg, PA, USA: Association for Computational Linguistics: 1994. p. 1034-8.
-
(1994)
Proceedings of the 15th Conference on Computational Linguistics
, vol.2
, pp. 1034-1038
-
-
Ananiadou, S.1
-
13
-
-
0037250015
-
Protein structures and information extraction from biological texts: the PASTA system
-
Gaizauskas R, Demetriou G, Artymiuk PJ, Willett P. Protein structures and information extraction from biological texts: the PASTA system. Bioinformatics. 2003; 19(1):135-43.
-
(2003)
Bioinformatics
, vol.19
, Issue.1
, pp. 135-143
-
-
Gaizauskas, R.1
Demetriou, G.2
Artymiuk, P.J.3
Willett, P.4
-
14
-
-
0031690080
-
Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families
-
Andrade MA, Valencia A. Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families. Bioinformatics. 1998; 14(7):600-7.
-
(1998)
Bioinformatics
, vol.14
, Issue.7
, pp. 600-607
-
-
Andrade, M.A.1
Valencia, A.2
-
15
-
-
30744457935
-
Gene/protein name recognition based on support vector machine using dictionary as features
-
Mitsumori T, Fation S, Murata M, Doi K, Doi H. Gene/protein name recognition based on support vector machine using dictionary as features. BMC Bioinformatics. 2005; 6(Suppl 1):8.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 8
-
-
Mitsumori, T.1
Fation, S.2
Murata, M.3
Doi, K.4
Doi, H.5
-
16
-
-
33947305118
-
Identifying gene and protein mentions in text using conditional random fields
-
McDonald R, Pereira F. Identifying gene and protein mentions in text using conditional random fields. BMC Bioinformatics. 2005; 6(Suppl 1):6.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 6
-
-
McDonald, R.1
Pereira, F.2
-
17
-
-
33947250174
-
GENETAG: a tagged corpus for gene/protein named entity recognition
-
Tanabe L, Xie N, Thom LH, Matten W, Wilbur WJ. GENETAG: a tagged corpus for gene/protein named entity recognition. BMC Bioinformatics. 2005; 6(Suppl 1):3.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 3
-
-
Tanabe, L.1
Xie, N.2
Thom, L.H.3
Matten, W.4
Wilbur, W.J.5
-
18
-
-
4944229711
-
GENIA corpus-a semantically annotated corpus for bio-text mining
-
Kim J-D, Ohta T, Tateisi Y, Tsujii J. GENIA corpus-a semantically annotated corpus for bio-text mining. Bioinformatics. 2003; 19(Suppl 1):180-2.
-
(2003)
Bioinformatics
, vol.19
, pp. 180-182
-
-
Kim, J.-D.1
Ohta, T.2
Tateisi, Y.3
Tsujii, J.4
-
19
-
-
84901001907
-
Chemical named entities recognition: a review on approaches and applications
-
Eltyeb S, Salim N. Chemical named entities recognition: a review on approaches and applications. J Cheminformatics. 2014; 6:17.
-
(2014)
J Cheminformatics
, vol.6
, pp. 17
-
-
Eltyeb, S.1
Salim, N.2
-
20
-
-
84895437465
-
NCBI disease corpus: a resource for disease name recognition and concept normalization
-
Doğan RI, Leaman R, Lu Z. NCBI disease corpus: a resource for disease name recognition and concept normalization. J Biomed Informatics. 2014; 47:1-10.
-
(2014)
J Biomed Informatics
, vol.47
, pp. 1-10
-
-
Doğan, R.I.1
Leaman, R.2
Lu, Z.3
-
21
-
-
84892628151
-
Rewriting and suppressing UMLS terms for improved biomedical term identification
-
Hettne KM, van Mulligen EM, Schuemie MJ, Schijvenaars BJA, Kors JA. Rewriting and suppressing UMLS terms for improved biomedical term identification. J Biomed Informatics. 2010; 1:5.
-
(2010)
J Biomed Informatics
, vol.1
, pp. 5
-
-
Hettne, K.M.1
van Mulligen, E.M.2
Schuemie, M.J.3
Schijvenaars, B.J.A.4
Kors, J.A.5
-
22
-
-
84938995155
-
-
The Unified Medical Language System
-
The Unified Medical Language System. http://www.nlm.nih.gov/research/umls .
-
-
-
-
23
-
-
77955287813
-
An overview of MetaMap: historical perspective and recent advances
-
Aronson AR, Lang F-M. An overview of MetaMap: historical perspective and recent advances. J Am Med Informatics Assoc. 2010; 17:229-36.
-
(2010)
J Am Med Informatics Assoc.
, vol.17
, pp. 229-236
-
-
Aronson, A.R.1
Lang, F.-M.2
-
24
-
-
84888192341
-
Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts
-
Zhang S, Elhadad N. Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts. J Biomed Informatics. 2013; 46(6):1088-98.
-
(2013)
J Biomed Informatics
, vol.46
, Issue.6
, pp. 1088-1098
-
-
Zhang, S.1
Elhadad, N.2
-
25
-
-
84899493552
-
Development and evaluation of RapTAT: a machine learning system for concept mapping of phrases from medical narratives
-
Gobbel GT, Reeves R, Jayaramaraja S, Giuse D, Speroff T, Brown SH, et al. Development and evaluation of RapTAT: a machine learning system for concept mapping of phrases from medical narratives. J Biomed Inform. 2014; 48:54-65.
-
(2014)
J Biomed Inform.
, vol.48
, pp. 54-65
-
-
Gobbel, G.T.1
Reeves, R.2
Jayaramaraja, S.3
Giuse, D.4
Speroff, T.5
Brown, S.H.6
-
26
-
-
84863537188
-
Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis
-
Wu ST, Liu H, Li D, Tao C, Musen MA, Chute CG, et al. Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J Am Med Informatics Assoc. 2012; 19:149-56.
-
(2012)
J Am Med Informatics Assoc.
, vol.19
, pp. 149-156
-
-
Wu, S.T.1
Liu, H.2
Li, D.3
Tao, C.4
Musen, M.A.5
Chute, C.G.6
-
28
-
-
0036368578
-
Finding UMLS Metathesaurus concepts in MEDLINE
-
American Medical Informatics Association
-
Srinivasan S, Rindflesch TC, Hole WT, Aronson AR, Mork JG. Finding UMLS Metathesaurus concepts in MEDLINE. In: Proceedings of the AMIA Annual Symposium. American Medical Informatics Association: 2002. p. 727-31.
-
(2002)
Proceedings of the AMIA Annual Symposium
, pp. 727-731
-
-
Srinivasan, S.1
Rindflesch, T.C.2
Hole, W.T.3
Aronson, A.R.4
Mork, J.G.5
-
29
-
-
84983035827
-
A comprehensive analysis of five million UMLS Metathesaurus terms using eighteen million MEDLINE citations
-
American Medical Informatics Association
-
Xu R, Musen MA, Shah NH. A comprehensive analysis of five million UMLS Metathesaurus terms using eighteen million MEDLINE citations. In: AMIA Annual Symposium Proceedings. American Medical Informatics Association: 2010. p. 907-11.
-
(2010)
AMIA Annual Symposium Proceedings
, pp. 907-911
-
-
Xu, R.1
Musen, M.A.2
Shah, N.H.3
-
30
-
-
34748873751
-
SemCat: Semantically categorized entities for genomics
-
American Medical Informatics Association
-
Tanabe L, Thom LH, Matten W, Comeau DC, Wilbur WJ. SemCat: Semantically categorized entities for genomics. In: AMIA Annual Symposium Proceedings. American Medical Informatics Association: 2006. p. 754-8.
-
(2006)
AMIA Annual Symposium Proceedings
, pp. 754-758
-
-
Tanabe, L.1
Thom, L.H.2
Matten, W.3
Comeau, D.C.4
Wilbur, W.J.5
-
31
-
-
84876495421
-
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information
-
Kim S, Kim W, Wei C-H, Lu Z, Wilbur WJ. Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information. Database. 2012; 2012:042.
-
(2012)
Database
, vol.2012
, pp. 42
-
-
Kim, S.1
Kim, W.2
Wei, C.-H.3
Lu, Z.4
Wilbur, W.J.5
-
33
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
Consortium TU. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res. 2014; 42(D1):191-8.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 191-198
-
-
Consortium, T.U.1
-
34
-
-
16244386565
-
Towards a semantic lexicon for biological language processing
-
Verspoor K. Towards a semantic lexicon for biological language processing. Comp Funct Genomics. 2005; 6(1-2):61-6.
-
(2005)
Comp Funct Genomics
, vol.6
, Issue.1-2
, pp. 61-66
-
-
Verspoor, K.1
-
35
-
-
34250744835
-
Semantic classification of biomedical concepts using distributional similarity
-
Fan J-W, Friedman C. Semantic classification of biomedical concepts using distributional similarity. J Am Med Informatics Assoc. 2007; 14:467-77.
-
(2007)
J Am Med Informatics Assoc.
, vol.14
, pp. 467-477
-
-
Fan, J.-W.1
Friedman, C.2
-
36
-
-
50549085635
-
Semantic reclassification of the UMLS concepts
-
Fan J-W, Friedman C. Semantic reclassification of the UMLS concepts. Bioinformatics. 2008; 24(17):1971-3.
-
(2008)
Bioinformatics
, vol.24
, Issue.17
, pp. 1971-1973
-
-
Fan, J.-W.1
Friedman, C.2
-
37
-
-
85036111686
-
Unsupervised, corpus-based method for extending a biomedical terminology
-
Stroudsburg, PA, USA: Association for Computational Linguistics
-
Bodenreider O, Rindflesch TC, Burgun A. Unsupervised, corpus-based method for extending a biomedical terminology. In: Proceedings of the ACL-02 Workshop on Natural Language Processing in the Biomedical Domain. Stroudsburg, PA, USA: Association for Computational Linguistics: 2002. p. 53-60.
-
(2002)
Proceedings of the ACL-02 Workshop on Natural Language Processing in the Biomedical Domain
, pp. 53-60
-
-
Bodenreider, O.1
Rindflesch, T.C.2
Burgun, A.3
-
40
-
-
17644423946
-
Unsupervised named-entity extraction from the Web: An experimental study
-
Etzioni O, Cafarella M, Downey D, Popescu A-M, Shaked T, et al. Unsupervised named-entity extraction from the Web: An experimental study. Artif Intell. 2005; 165(1):91-134.
-
(2005)
Artif Intell.
, vol.165
, Issue.1
, pp. 91-134
-
-
Etzioni, O.1
Cafarella, M.2
Downey, D.3
Popescu, A.-M.4
Shaked, T.5
-
41
-
-
0012990385
-
Automatic acquisition of hyponyms from large text corpora
-
Stroudsburg, PA, USA: Association for Computational Linguistics
-
Hearst MA. Automatic acquisition of hyponyms from large text corpora. In: Proceedings of the 14th Conference on Computational Linguistics. Stroudsburg, PA, USA: Association for Computational Linguistics: 1992. p. 539-45.
-
(1992)
Proceedings of the 14th Conference on Computational Linguistics
, pp. 539-545
-
-
Hearst, M.A.1
-
43
-
-
14344259207
-
Solving large scale linear prediction problems using stochastic gradient descent algorithms
-
Zhang T. Solving large scale linear prediction problems using stochastic gradient descent algorithms. In: Proceedings of the 21st International Conference on Machine Learning: 2004. p. 919-26.
-
(2004)
Proceedings of the 21st International Conference on Machine Learning
, pp. 919-926
-
-
Zhang, T.1
-
44
-
-
78649522203
-
Finding related sentence pairs in MEDLINE
-
Smith LH, Wilbur WJ. Finding related sentence pairs in MEDLINE. Inf Retrieval. 2010; 13(6):601-17.
-
(2010)
Inf Retrieval
, vol.13
, Issue.6
, pp. 601-617
-
-
Smith, L.H.1
Wilbur, W.J.2
-
45
-
-
80053411166
-
Classifying protein-protein interaction articles using word and syntactic features
-
Kim S, Wilbur WJ. Classifying protein-protein interaction articles using word and syntactic features. BMC Bioinformatics. 2011; 12(Suppl 8):9.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 9
-
-
Kim, S.1
Wilbur, W.J.2
-
47
-
-
5044241106
-
MedPost: a part-of-speech tagger for biomedical text
-
Smith L, Rindflesch T, Wilbur WJ. MedPost: a part-of-speech tagger for biomedical text. Bioinformatics. 2004; 20(14):2320-1.
-
(2004)
Bioinformatics
, vol.20
, Issue.14
, pp. 2320-2321
-
-
Smith, L.1
Rindflesch, T.2
Wilbur, W.J.3
|