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Volumn 36, Issue 5, 2015, Pages 496-503

wKGGSeq: A comprehensive strategy-based and disease-targeted online framework to facilitate exome sequencing studies of inherited disorders

Author keywords

Exome sequencing; Mendelian disease; Quality control; Variant annotation; Variant prioritization

Indexed keywords

ARTICLE; CROHN DISEASE; CYSTIC FIBROSIS; EXOME; FAMILIAL CANCER; GENE MUTATION; GENOTYPE; HEARING IMPAIRMENT; HEREDITARY MOTOR SENSORY NEUROPATHY; HEREDITY; HIGH THROUGHPUT SEQUENCING; HOMOZYGOSITY; HUMAN; INHERITANCE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SPINOCEREBELLAR DEGENERATION; BIOLOGY; COMPUTER PROGRAM; GENETIC ASSOCIATION; GENETIC DATABASE; GENETIC DISEASES, INBORN; GENETICS; GENOMICS; INTERNET; MOLECULAR GENETICS; PROCEDURES; WEB BROWSER;

EID: 84928204559     PISSN: 10597794     EISSN: 10981004     Source Type: Journal    
DOI: 10.1002/humu.22766     Document Type: Article
Times cited : (9)

References (34)
  • 1
    • 84904818189 scopus 로고    scopus 로고
    • A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies
    • Aleman A, Garcia-Garcia F, Salavert F, Medina I, Dopazo J. 2014. A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies. Nucleic Acids Res 42:W88-W93.
    • (2014) Nucleic Acids Res , vol.42 , pp. W88-W93
    • Aleman, A.1    Garcia-Garcia, F.2    Salavert, F.3    Medina, I.4    Dopazo, J.5
  • 5
    • 84878589007 scopus 로고    scopus 로고
    • Improving the accuracy and efficiency of identity-by-descent detection in population data
    • Browning BL, Browning SR. 2013. Improving the accuracy and efficiency of identity-by-descent detection in population data. Genetics 194:459-471.
    • (2013) Genetics , vol.194 , pp. 459-471
    • Browning, B.L.1    Browning, S.R.2
  • 6
    • 84864294140 scopus 로고    scopus 로고
    • wANNOVAR: annotating genetic variants for personal genomes via the web
    • Chang X, Wang K. 2012. wANNOVAR: annotating genetic variants for personal genomes via the web. J Med Genet 49:433-436.
    • (2012) J Med Genet , vol.49 , pp. 433-436
    • Chang, X.1    Wang, K.2
  • 7
    • 84871952176 scopus 로고    scopus 로고
    • Improved whole-chromosome phasing for disease and population genetic studies
    • Delaneau O, Zagury JF, Marchini J. 2013. Improved whole-chromosome phasing for disease and population genetic studies. Nat Methods 10:5-6.
    • (2013) Nat Methods , vol.10 , pp. 5-6
    • Delaneau, O.1    Zagury, J.F.2    Marchini, J.3
  • 9
    • 84867130076 scopus 로고    scopus 로고
    • Exome sequencing and complex disease: practical aspects of rare variant association studies
    • Do R, Kathiresan S, Abecasis GR. 2012. Exome sequencing and complex disease: practical aspects of rare variant association studies. Hum Mol Genet 21:R1-R9.
    • (2012) Hum Mol Genet , vol.21 , pp. R1-R9
    • Do, R.1    Kathiresan, S.2    Abecasis, G.R.3
  • 13
    • 80053176070 scopus 로고    scopus 로고
    • Detecting autozygosity through runs of homozygosity: a comparison of three autozygosity detection algorithms
    • Howrigan DP, Simonson MA, Keller MC. 2011. Detecting autozygosity through runs of homozygosity: a comparison of three autozygosity detection algorithms. BMC Genomics 12:460.
    • (2011) BMC Genomics , vol.12 , pp. 460
    • Howrigan, D.P.1    Simonson, M.A.2    Keller, M.C.3
  • 14
    • 84867326768 scopus 로고    scopus 로고
    • GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes
    • Kamphans T, Krawitz PM. 2012. GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes. Bioinformatics 28:2515-2516.
    • (2012) Bioinformatics , vol.28 , pp. 2515-2516
    • Kamphans, T.1    Krawitz, P.M.2
  • 16
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 18
    • 84874018379 scopus 로고    scopus 로고
    • Whole exome sequencing identifies a novel mutation in the transglutaminase 6 gene for spinocerebellar ataxia in a Chinese family
    • Li M, Pang SY, Song Y, Kung MH, Ho SL, Sham PC. 2013a. Whole exome sequencing identifies a novel mutation in the transglutaminase 6 gene for spinocerebellar ataxia in a Chinese family. Clin Genet 83:269-273.
    • (2013) Clin Genet , vol.83 , pp. 269-273
    • Li, M.1    Pang, S.Y.2    Song, Y.3    Kung, M.H.4    Ho, S.L.5    Sham, P.C.6
  • 19
    • 84867042205 scopus 로고    scopus 로고
    • Genetic variant representation, annotation and prioritization in the post-GWAS era
    • Li MJ, Sham PC, Wang J. 2012a. Genetic variant representation, annotation and prioritization in the post-GWAS era. Cell Res 22:1505-1508.
    • (2012) Cell Res , vol.22 , pp. 1505-1508
    • Li, M.J.1    Sham, P.C.2    Wang, J.3
  • 20
    • 84928204709 scopus 로고    scopus 로고
    • Current trend of annotating single nucleotide variation in humans-a case study on SNVrap
    • Epub ahead of print
    • Li MJ, Wang J. 2014. Current trend of annotating single nucleotide variation in humans-a case study on SNVrap. Methods. [Epub ahead of print]
    • (2014) Methods
    • Li, M.J.1    Wang, J.2
  • 21
    • 84860147579 scopus 로고    scopus 로고
    • A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases
    • Li MX, Gui HS, Kwan JS, Bao SY, Sham PC. 2012b. A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases. Nucleic acids research 40:e53.
    • (2012) Nucleic acids research , vol.40 , pp. e53
    • Li, M.X.1    Gui, H.S.2    Kwan, J.S.3    Bao, S.Y.4    Sham, P.C.5
  • 22
    • 84873486397 scopus 로고    scopus 로고
    • Predicting mendelian disease-causing non-synonymous single nucleotide variants in exome sequencing studies
    • Li MX, Kwan JS, Bao SY, Yang W, Ho SL, Song YQ, Sham PC. 2013b. Predicting mendelian disease-causing non-synonymous single nucleotide variants in exome sequencing studies. PLoS Genet 9:e1003143.
    • (2013) PLoS Genet , vol.9 , pp. e1003143
    • Li, M.X.1    Kwan, J.S.2    Bao, S.Y.3    Yang, W.4    Ho, S.L.5    Song, Y.Q.6    Sham, P.C.7
  • 23
    • 84864118162 scopus 로고    scopus 로고
    • Exome sequencing identifies novel compound heterozygous mutations of IL-10 receptor 1 in neonatal-onset Crohn's disease
    • Mao H, Yang W, Lee PP, Ho MH, Yang J, Zeng S, Chong CY, Lee TL, Tu W, Lau YL. 2012. Exome sequencing identifies novel compound heterozygous mutations of IL-10 receptor 1 in neonatal-onset Crohn's disease. Genes Immun 13:437-442.
    • (2012) Genes Immun , vol.13 , pp. 437-442
    • Mao, H.1    Yang, W.2    Lee, P.P.3    Ho, M.H.4    Yang, J.5    Zeng, S.6    Chong, C.Y.7    Lee, T.L.8    Tu, W.9    Lau, Y.L.10
  • 26
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • McLaren W, Pritchard B, Rios D, Chen Y, Flicek P, Cunningham F. 2010. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 26:2069-2070.
    • (2010) Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1    Pritchard, B.2    Rios, D.3    Chen, Y.4    Flicek, P.5    Cunningham, F.6
  • 28
    • 84875217898 scopus 로고    scopus 로고
    • Disease-targeted sequencing: a cornerstone in the clinic
    • Rehm HL. 2013. Disease-targeted sequencing: a cornerstone in the clinic. Nat Rev Genet 14:295-300.
    • (2013) Nat Rev Genet , vol.14 , pp. 295-300
    • Rehm, H.L.1
  • 29
    • 79960266560 scopus 로고    scopus 로고
    • Strategies for exome and genome sequence data analysis in disease-gene discovery projects
    • Robinson PN, Krawitz P, Mundlos S. 2011. Strategies for exome and genome sequence data analysis in disease-gene discovery projects. Clin Genet 80:127-132.
    • (2011) Clin Genet , vol.80 , pp. 127-132
    • Robinson, P.N.1    Krawitz, P.2    Mundlos, S.3
  • 33
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
    • Wang K, Li M, Hakonarson H. 2010b. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38:e164.
    • (2010) Nucleic Acids Res , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 34
    • 84871730851 scopus 로고    scopus 로고
    • PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data
    • Zhang L, Zhang J, Yang J, Ying D, Lau YL, Yang W. 2013. PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data. Bioinformatics 29:124-125.
    • (2013) Bioinformatics , vol.29 , pp. 124-125
    • Zhang, L.1    Zhang, J.2    Yang, J.3    Ying, D.4    Lau, Y.L.5    Yang, W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.