메뉴 건너뛰기




Volumn 103, Issue 2-3, 2014, Pages 169-176

ExomeSuite: Whole exome sequence variant filtering tool for rapid identification of putative disease causing SNVs/indels

Author keywords

Exome; Filtering; Homozygosity mapping; Mendelian disease; Software

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CLINICAL ARTICLE; COMPUTER MODEL; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SEQUENCE; DOMINANT INHERITANCE; ELECTRORETINOGRAPHY; EXOME; GENE; GENE LOCUS; GENE MAPPING; GENE SEQUENCE; GENETIC LINKAGE; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; HUMAN; INDEL MUTATION; LRP1 GENE; MISSENSE MUTATION; MUTATIONAL ANALYSIS; NIGHT BLINDNESS; NUCLEOTIDE SEQUENCE; OPHTHALMOSCOPY; PEDIGREE; PERIMETRY; PHENOTYPE; PRIORITY JOURNAL; PUPIL REFLEX; RDH5 GENE; RECESSIVE INHERITANCE; SINGLE NUCLEOTIDE POLYMORPHISM; USH2A GENE; VISUAL ACUITY; ALLELE; CLINICAL TRIAL; FEMALE; GENETIC ASSOCIATION; GENETIC DISORDER; GENETICS; HETEROZYGOTE; HOMOZYGOTE; INFORMATION PROCESSING; MALE; PROCEDURES;

EID: 84898047240     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2014.02.006     Document Type: Article
Times cited : (15)

References (37)
  • 1
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
    • Wang K., Li M., Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010, 38:e164.
    • (2010) Nucleic Acids Res. , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 2
    • 84864421963 scopus 로고    scopus 로고
    • HomozygosityMapper2012 - bridging the gap between homozygosity mapping and deep sequencing
    • Seelow D., Schuelke M. HomozygosityMapper2012 - bridging the gap between homozygosity mapping and deep sequencing. Nucleic Acids Res. 2012, 1-5.
    • (2012) Nucleic Acids Res. , pp. 1-5
    • Seelow, D.1    Schuelke, M.2
  • 9
    • 84898032836 scopus 로고    scopus 로고
    • W.NHLBI GO Exome Sequencing Project (ESP)
    • (Accessed: 03/18/2013)
    • W.NHLBI GO Exome Sequencing Project (ESP) Seattle, exome variant server (Accessed: 03/18/2013). http://evs.gs.washington.edu/EVS/.
    • Seattle, exome variant server
  • 10
    • 77955151784 scopus 로고    scopus 로고
    • MutationTaster evaluates disease-causing potential of sequence alterations
    • Schwarz J.M., Rödelsperger C., Schuelke M., Seelow D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat. Publ. Group 2010, 7:575-576.
    • (2010) Nat. Publ. Group , vol.7 , pp. 575-576
    • Schwarz, J.M.1    Rödelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 12
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P., Henikoff S., Ng P.C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 2009, 4:1073-1081.
    • (2009) Nat. Protoc. , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 14
    • 84898021165 scopus 로고    scopus 로고
    • (Accessed: 12/13/2013)
    • forge M. XQuartz (Accessed: 12/13/2013). http://xquartz.macosforge.org/trac.
    • XQuartz
    • Forge, M.1
  • 15
    • 84898021726 scopus 로고    scopus 로고
    • L.for the Molecular Diagnosis of Inherited Eye Diseases
    • (Accessed: 08/03/2012)
    • L.for the Molecular Diagnosis of Inherited Eye Diseases RetNet: retinal information network (Accessed: 08/03/2012). http://sph.uth.tmc.edu/retnet/.
    • RetNet: retinal information network
  • 16
    • 84898046250 scopus 로고    scopus 로고
    • Ensembl homo_sampiens VCF ftp://ftp.ens0065mbl.org/pub/release-74/variation/vcf/homo_sapiens.
    • Ensembl homo_sampiens VCF
  • 17
    • 84898022029 scopus 로고    scopus 로고
    • (Accessed: 09/7/2013.)
    • UCSC CSC Genome Browser: Downloads (Accessed: 09/7/2013.). http://hgdownload.soe.ucsc.edu/downloads.html#human.
    • UCSC CSC Genome Browser: Downloads
  • 19
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A., Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2010, 39:D152-D157.
    • (2010) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 23
    • 84898030646 scopus 로고    scopus 로고
    • I.of Medical Genetics in Cardiff
    • (Accessed: 12/13/2013)
    • I.of Medical Genetics in Cardiff The Human Gene Mutation Database (Accessed: 12/13/2013). http://www.hgmd.org/.
    • The Human Gene Mutation Database
  • 25
    • 18244386256 scopus 로고    scopus 로고
    • Cone and rod dysfunction in fundus albipunctatus with RDH5 mutation: an electrophysiological study
    • Niwa Y., Kondo M., Ueno S., Nakamura M., Terasaki H., Miyake Y. Cone and rod dysfunction in fundus albipunctatus with RDH5 mutation: an electrophysiological study. Invest. Ophthalmol. Vis. Sci. 2005, 46:1480-1485.
    • (2005) Invest. Ophthalmol. Vis. Sci. , vol.46 , pp. 1480-1485
    • Niwa, Y.1    Kondo, M.2    Ueno, S.3    Nakamura, M.4    Terasaki, H.5    Miyake, Y.6
  • 26
    • 0033033364 scopus 로고    scopus 로고
    • Mutations in the gene encoding 11-cis retinol dehydrogenase cause delayed dark adaptation and fundus albipunctatus
    • Yamamoto H., Simon A., Eriksson U., Harris E., Berson E.L., Dryja T.P. Mutations in the gene encoding 11-cis retinol dehydrogenase cause delayed dark adaptation and fundus albipunctatus. Nat. Genet. 1999, 22:188-191.
    • (1999) Nat. Genet. , vol.22 , pp. 188-191
    • Yamamoto, H.1    Simon, A.2    Eriksson, U.3    Harris, E.4    Berson, E.L.5    Dryja, T.P.6
  • 27
    • 0033765274 scopus 로고    scopus 로고
    • A high association with cone dystrophy in Fundus albipunctatus caused by mutations of the RDH5 gene
    • Nakamura M., Hotta Y., Tanikawa A., Terasaki H., Miyake Y. A high association with cone dystrophy in Fundus albipunctatus caused by mutations of the RDH5 gene. Invest. Ophthalmol. Vis. Sci. 2000, 41:3925-3932.
    • (2000) Invest. Ophthalmol. Vis. Sci. , vol.41 , pp. 3925-3932
    • Nakamura, M.1    Hotta, Y.2    Tanikawa, A.3    Terasaki, H.4    Miyake, Y.5
  • 28
    • 0035004325 scopus 로고    scopus 로고
    • Deconstructing the LDL receptor - a rhapsody in pieces
    • Herz J. Deconstructing the LDL receptor - a rhapsody in pieces. Nat. Struct. Biol. 2001, 8:476-478.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 476-478
    • Herz, J.1
  • 29
    • 0035013711 scopus 로고    scopus 로고
    • Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair
    • Jeon H., Meng W., Takagi J., Eck M.J., Springer T.A., Blacklow S.C. Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair. Nat. Struct. Biol. 2001, 8:499-504.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 499-504
    • Jeon, H.1    Meng, W.2    Takagi, J.3    Eck, M.J.4    Springer, T.A.5    Blacklow, S.C.6
  • 31
    • 33947161097 scopus 로고    scopus 로고
    • 11-cis retinol dehydrogenase mutations as a major cause of the congenital night-blindness disorder known as fundus albipunctatus
    • Gonzalez-Fernandez F., Kurz D., Bao Y., Newman S., Conway B.P., Young J.E., Han D.P., Khani S.C. 11-cis retinol dehydrogenase mutations as a major cause of the congenital night-blindness disorder known as fundus albipunctatus. Mol. Vis. 1999, 5:41.
    • (1999) Mol. Vis. , vol.5 , pp. 41
    • Gonzalez-Fernandez, F.1    Kurz, D.2    Bao, Y.3    Newman, S.4    Conway, B.P.5    Young, J.E.6    Han, D.P.7    Khani, S.C.8
  • 32
    • 77956109992 scopus 로고    scopus 로고
    • Novel mutations in the long isoform of the USH2A gene in patients with Usher syndrome type II or non-syndromic retinitis pigmentosa
    • McGee T.L., Seyedahmadi B.J., Sweeney M.O., Dryja T.P., Berson E.L. Novel mutations in the long isoform of the USH2A gene in patients with Usher syndrome type II or non-syndromic retinitis pigmentosa. J. Med. Genet. 2010, 47:499-506.
    • (2010) J. Med. Genet. , vol.47 , pp. 499-506
    • McGee, T.L.1    Seyedahmadi, B.J.2    Sweeney, M.O.3    Dryja, T.P.4    Berson, E.L.5
  • 35
    • 33644537810 scopus 로고    scopus 로고
    • Comprehensive statistical study of 452 BRCA1 missense substitutions with classification of eight recurrent substitutions as neutral
    • Tavtigian S.V. Comprehensive statistical study of 452 BRCA1 missense substitutions with classification of eight recurrent substitutions as neutral. J. Med. Genet. 2005, 43:295-305.
    • (2005) J. Med. Genet. , vol.43 , pp. 295-305
    • Tavtigian, S.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.