Incidence of respiratory viral infections detected by PCR and real-time PCR in adult patients with community-acquired pneumonia: A meta-analysis

Respiration

Volumn 89, Issue 4, 2015, Pages 343-352

  Wu, Xiaodong ^a   Wang, Qin ^b   Wang, Min ^a   Su, Xin ^a   Xing, Zheng ^c   Zhang, Weiyun ^a   Shi, Yi ^a  

^a JINLING HOSPITAL   (China)

^b SECOND MILITARY MEDICAL UNIVERSITY   (China)

^c UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Adults; Community acquired pneumonia; Incidence of viral infections; Meta analysis; Respiratory virus

Indexed keywords

ADULT; ARTICLE; COMMUNITY ACQUIRED PNEUMONIA; CORONAVIRIDAE; HUMAN; INCIDENCE; INFLUENZA VIRUS; META ANALYSIS; MIXED INFECTION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RHINOVIRUS; VIRAL RESPIRATORY TRACT INFECTION; COMMUNITY-ACQUIRED INFECTIONS; PNEUMONIA, VIRAL; VIROLOGY;

COMMUNITY-ACQUIRED INFECTIONS; HUMANS; PNEUMONIA, VIRAL;

EID: 84928203861     PISSN: 00257931     EISSN: 14230356     Source Type: Journal    
DOI: 10.1159/000369561     Document Type: Article

References (47)

1. WHO: The top 10 causes of death. 2013. http://who.int/mediacentre/factsheets/fs310/.en/.
2. Lim WS, Baudouin SV, George RC, Hill AT, Jamieson C, Le Jeune I, Macfarlane JT, Read RC, Roberts HJ, Levy ML, Wani M, Woodhead MA. BTS guidelines for the management of community-Acquired pneumonia in adults: update 2009. Thorax. 2009; 64(suppl 3): iii1-iii55
3. Mandell LA, Wunderink RG, Anzueto A, Bartlett JG, Campbell GD, Dean NC, Dowell SF, File TM Jr, Musher DM, Niederman MS, Torres A, Whitney CG. Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-Acquired pneumonia in adults. Clin Infect Dis. 2007; 44(suppl 2): S27-S72
4. Durrington HJ, Summers C. Recent changes in the management of community-Acquired pneumonia in adults. BMJ. 2008; 336: 1429-1433
5. Bartlett JG. Diagnostic tests for agents of community-Acquired pneumonia. Clin Infect Dis. 2011; 52(suppl 4): S296-S304
6. Moran GJ, Rothman RE, Volturo GA. Emergency management of community-Acquired bacterial pneumonia: what is new since the 2007 Infectious Diseases Society of America/.American Thoracic Society guidelines. Am J Emerg Med. 2013; 31: 602-612
7. Johansson N, Kalin M, Tiveljung-Lindell A, Giske CG, Hedlund J. Etiology of community-Acquired pneumonia: increased microbiological yield with new diagnostic methods. Clin Infect Dis. 2010; 50: 202-209
8. Tiveljung-Lindell A, Rotzen-Ostlund M, Gupta S, Ullstrand R, Grillner L, Zweygberg-Wirgart B, Allander T. Development and implementation of a molecular diagnostic platform for daily rapid detection of 15 respiratory viruses. J Med Virol. 2009; 81: 167-175
9. DerSimonian R, Laird N. Meta-Analysis in clinical trials. Control Clin Trials. 1986; 7: 177-188
10. Higgins JP, Thompson SG, Deeks JJ, Altman DG. Measuring inconsistency in meta-Analyses. BMJ. 2003; 327: 557-560
11. Yin YD, Zhao F, Ren LL, Song SF, Liu YM, Zhang JZ, Cao B. Evaluation of the Japanese Respiratory Society guidelines for the identification of Mycoplasma pneumoniae pneumonia. Respirology. 2012; 17: 1131-1136
12. Cao B, Ren LL, Zhao F, Gonzalez R, Song SF, Bai L, Yin YD, Zhang YY, Liu YM, Guo P, Zhang JZ, Wang JW, Wang C. Viral and Mycoplasma pneumoniae community-Acquired pneumonia and novel clinical outcome evaluation in ambulatory adult patients in China. Eur J Clin Microbiol Infect Dis. 2010; 29: 1443-1448
13. Wiemken T, Peyrani P, Bryant K, Kelley RR, Summersgill J, Arnold F, Carrico R, McKinney WP, Jonsson C, Carrico K, Ramirez J. Incidence of respiratory viruses in patients with community-Acquired pneumonia admitted to the intensive care unit: results from the Severe Influenza Pneumonia Surveillance (SIPS) project. Eur J Clin Microbiol Infect Dis. 2013; 32: 705-710
14. Viasus D, Marinescu C, Villoslada A, Cordero E, Galvez-Acebal J, Farinas MC, Gracia-Ahufinger I, Fernandez-Navarro A, Niubo J, Ortega L, Munez-Rubio E, Romero-Gomez MP, Carratala J. Community-Acquired pneumonia during the first post-pandemic influenza season: a prospective, multicentre cohort study. J Infect. 2013; 67: 185-193
15. Takahashi K, Suzuki M, Minh le N, Anh NH, Huong LT, Son TV, Long PT, Ai NT, Tho le H, Morimoto K, Kilgore PE, Anh DD, Ariyoshi K, Yoshida LM. The incidence and aetiology of hospitalised community-Acquired pneumonia among Vietnamese adults: a prospective surveillance in central Vietnam. BMC Infect Dis. 2013; 13: 296
16. Musher DM, Roig IL, Cazares G, Stager CE, Logan N, Safar H. Can an etiologic agent be identified in adults who are hospitalized for community-Acquired pneumonia: results of a one-year study. J Infect. 2013; 67: 11-18
17. Huijskens EG, van Erkel AJ, Palmen FM, Buiting AG, Kluytmans JA, Rossen JW. Viral and bacterial aetiology of community-Acquired pneumonia in adults. Influenza Other Respir Viruses. 2013; 7: 567-573
18. Sangil A, Calbo E, Robles A, Benet S, Viladot ME, Pascual V, Cuchi E, Perez J, Barreiro B, Sanchez B, Torres J, Canales L, De Marcos JA, Garau J. Aetiology of community-Acquired pneumonia among adults in an H1N1 pandemic year: the role of respiratory viruses. Eur J Clin Microbiol Infect Dis. 2012; 31: 2765-2772
19. Choi SH, Hong SB, Ko GB, Lee Y, Park HJ, Park SY, Moon SM, Cho OH, Park KH, Chong YP, Kim SH, Huh JW, Sung H, Do KH, Lee SO, Kim MN, Jeong JY, Lim CM, Kim YS, Woo JH, Koh Y. Viral infection in patients with severe pneumonia requiring intensive care unit admission. Am J Respir Crit Care Med. 2012; 186: 325-332
20. Cilloniz C, Ewig S, Ferrer M, Polverino E, Gabarrus A, Puig de la Bellacasa J, Mensa J, Torres A. Community-Acquired polymicrobial pneumonia in the intensive care unit: aetiology and prognosis. Crit Care. 2011; 15: R209
21. Shibli F, Chazan B, Nitzan O, Flatau E, Edelstein H, Blondheim O, Raz R, Colodner R. Etiology of community-Acquired pneumonia in hospitalized patients in northern Israel. Isr Med Assoc J. 2010; 12: 477-482
22. Mermond S, Berlioz-Arthaud A, Estivals M, Baumann F, Levenes H, Martin PM. Aetiology of community-Acquired pneumonia in hospitalized adult patients in New Caledonia. Trop Med Int Health. 2010; 15: 1517-1524
23. Lieberman D, Shimoni A, Shemer-Avni Y, Keren-Naos A, Shtainberg R. Respiratory viruses in adults with community-Acquired pneumonia. Chest. 2010; 138: 811-816
24. Diederen BM, Van Der Eerden MM, Vlaspolder F, Boersma WG, Kluytmans JA, Peeters MF. Detection of respiratory viruses and Legionella spp by real-Time polymerase chain reaction in patients with community acquired pneumonia. Scand J Infect Dis. 2009; 41: 45-50
25. Johnstone J, Majumdar SR, Fox JD, Marrie TJ. Viral infection in adults hospitalized with community-Acquired pneumonia: prevalence, pathogens, and presentation. Chest. 2008; 134: 1141-1148
26. Jennings LC, Anderson TP, Beynon KA, Chua A, Laing RT, Werno AM, Young SA, Chambers ST, Murdoch DR. Incidence and characteristics of viral community-Acquired pneumonia in adults. Thorax. 2008; 63: 42-48
27. Charles PG, Whitby M, Fuller AJ, Stirling R, Wright AA, Korman TM, Holmes PW, Christiansen KJ, Waterer GW, Pierce RJ, Mayall BC, Armstrong JG, Catton MG, Nimmo GR, Johnson B, Hooy M, Grayson ML. The etiology of community-Acquired pneumonia in Australia: why penicillin plus doxycycline or a macrolide is the most appropriate therapy. Clin Infect Dis. 2008; 46: 1513-1521
28. Angeles Marcos M, Camps M, Pumarola T, Antonio Martinez J, Martinez E, Mensa J, Garcia E, Penarroja G, Dambrava P, Casas I, Jimenez de Anta MT, Torres A. The role of viruses in the aetiology of community-Acquired pneumonia in adults. Antivir Ther. 2006; 11: 351-359
29. Templeton KE, Scheltinga SA, van den Eeden WC, Graffelman AW, van den Broek PJ, Claas EC. Improved diagnosis of the etiology of community-Acquired pneumonia with realtime polymerase chain reaction. Clin Infect Dis. 2005; 41: 345-351
30. Macfarlane J, Holmes W, Gard P, Macfarlane R, Rose D, Weston V, Leinonen M, Saikku P, Myint S. Prospective study of the incidence, aetiology and outcome of adult lower respiratory tract illness in the community. Thorax. 2001; 56: 109-114
31. Luchsinger V, Ruiz M, Zunino E, Martinez MA, Machado C, Piedra PA, Fasce R, Ulloa MT, Fink MC, Lara P, Gebauer M, Chavez F, Avendano LF. Community-Acquired pneumonia in Chile: the clinical relevance in the detection of viruses and atypical bacteria. Thorax. 2013; 68: 1000-1006
32. Saito A, Kohno S, Matsushima T, Watanabe A, Oizumi K, Yamaguchi K, Oda H. Prospective multicenter study of the causative organisms of community-Acquired pneumonia in adults in Japan. J Infect Chemother. 2006; 12: 63-69
33. Van der Sluijs KF, van der Poll T, Lutter R, Juffermans NP, Schultz MJ. Bench-To-bedside review: bacterial pneumonia with influenza -pathogenesis and clinical implications. Crit Care. 2010; 14: 219
34. Wunderink RG. Influenza and bacterial pneumonia - constant companions. Crit Care. 2010; 14: 150
35. McCullers JA. Insights into the interaction between influenza virus and pneumococcus. Clin Microbiol Rev. 2006; 19: 571-582
36. Finelli L, Fiore A, Dhara R, Brammer L, Shay DK, Kamimoto L, Fry A, Hageman J, Gorwitz R, Bresee J, Uyeki T. Influenza-Associated pediatric mortality in the United States: increase of Staphylococcus aureus coinfection. Pediatrics. 2008; 122: 805-811
37. Reed C, Kallen AJ, Patton M, Arnold KE, Farley MM, Hageman J, Finelli L. Infection with community-onset Staphylococcus aureus and influenza virus in hospitalized children. Pediatr Infect Dis J. 2009; 28: 572-576
38. Seki M, Kosai K, Yanagihara K, Higashiyama Y, Kurihara S, Izumikawa K, Miyazaki Y, Hirakata Y, Tashiro T, Kohno S. Disease severity in patients with simultaneous influenza and bacterial pneumonia. Intern Med. 2007; 46: 953-958
39. Nascimento-Carvalho CM, Ribeiro CT, Cardoso MR, Barral A, Araujo-Neto CA, Oliveira JR, Sobral LS, Viriato D, Souza AL, Saukkoriipi A, Paldanius M, Vainionpaa R, Leinonen M, Ruuskanen O. The role of respiratory viral infections among children hospitalized for community-Acquired pneumonia in a developing country. Pediatr Infect Dis J. 2008; 27: 939-941
40. Cevey-Macherel M, Galetto-Lacour A, Gervaix A, Siegrist CA, Bille J, Bescher-Ninet B, Kaiser L, Krahenbuhl JD, Gehri M. Etiology of community-Acquired pneumonia in hospitalized children based on WHO clinical guidelines. Eur J Pediatr. 2009; 168: 1429-1436
41. Garcia-Garcia ML, Calvo C, Pozo F, Villadangos PA, Perez-Brena P, Casas I. Spectrum of respiratory viruses in children with community-Acquired pneumonia. Pediatr Infect Dis J. 2012; 31: 808-813
42. Esposito S, Daleno C, Prunotto G, Scala A, Tagliabue C, Borzani I, Fossali E, Pelucchi C, Principi N. Impact of viral infections in children with community-Acquired pneumonia: results of a study of 17 respiratory viruses. Influenza Other Respir Viruses. 2013; 7: 18-26
43. Bautista E, Chotpitayasunondh T, Gao Z, Harper SA, Shaw M, Uyeki TM, Zaki SR, Hayden FG, Hui DS, Kettner JD, Kumar A, Lim M, Shindo N, Penn C, Nicholson KG. Clinical aspects of pandemic 2009 influenza A (H1N1) virus infection. N Engl J Med. 2010; 362: 1708-1719
44. Furumoto A, Ohkusa Y, Chen M, Kawakami K, Masaki H, Sueyasu Y, Iwanaga T, Aizawa H, Nagatake T, Oishi K. Additive effect of pneumococcal vaccine and influenza vaccine on acute exacerbation in patients with chronic lung disease. Vaccine. 2008; 26: 4284-4289
45. Yu H, Liao Q, Yuan Y, Zhou L, Xiang N, Huai Y, Guo X, Zheng Y, van Doorn HR, Farrar J, Gao Z, Feng Z, Wang Y, Yang W. Effectiveness of oseltamivir on disease progression and viral RNA shedding in patients with mild pandemic 2009 influenza A H1N1: opportunistic retrospective study of medical charts in China. BMJ. 2010; 341: c4779
46. Jokinen C, Heiskanen L, Juvonen H, Kallinen S, Kleemola M, Koskela M, Leinonen M, Ronnberg PR, Saikku P, Sten M, Tarkiainen A, Tukiainen H, Pyorala K, Makela PH. Microbial etiology of community-Acquired pneumonia in the adult population of 4 municipalities in eastern Finland. Clin Infect Dis. 2001; 32: 1141-1154
47. Ishida T, Hashimoto T, Arita M, Ito I, Osawa M. Etiology of community-Acquired pneumonia in hospitalized patients: a 3-year prospective study in Japan. Chest. 1998; 114: 1588-1593