-
1
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
Spitz F, Furlong EE (2012) Transcription factors: From enhancer binding to developmental control. Nat Rev Genet 13(9):613-626.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.9
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.2
-
2
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer LA, et al. (2006) Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441(7091):349-353.
-
(2006)
Nature
, vol.441
, Issue.7091
, pp. 349-353
-
-
Boyer, L.A.1
-
3
-
-
33646870495
-
Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
-
Bracken AP, Dietrich N, Pasini D, Hansen KH, Helin K (2006) Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. Genes Dev 20(9): 1123-1136.
-
(2006)
Genes Dev
, vol.20
, Issue.9
, pp. 1123-1136
-
-
Bracken, A.P.1
Dietrich, N.2
Pasini, D.3
Hansen, K.H.4
Helin, K.5
-
4
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2):315-326.
-
(2006)
Cell
, vol.125
, Issue.2
, pp. 315-326
-
-
Bernstein, B.E.1
-
5
-
-
62149110057
-
Uncoupling time and space in the collinear regulation of Hox genes
-
Tschopp P, Tarchini B, Spitz F, Zakany J, Duboule D (2009) Uncoupling time and space in the collinear regulation of Hox genes. PLoS Genet 5(3):e1000398.
-
(2009)
PLoS Genet
, vol.5
, Issue.3
, pp. e1000398
-
-
Tschopp, P.1
Tarchini, B.2
Spitz, F.3
Zakany, J.4
Duboule, D.5
-
6
-
-
66749180667
-
Epigenetic temporal control of mouse Hox genes in vivo
-
Soshnikova N, Duboule D (2009) Epigenetic temporal control of mouse Hox genes in vivo. Science 324(5932):1320-1323.
-
(2009)
Science
, vol.324
, Issue.5932
, pp. 1320-1323
-
-
Soshnikova, N.1
Duboule, D.2
-
7
-
-
80054110441
-
The dynamic architecture of Hox gene clusters
-
Noordermeer D, et al. (2011) The dynamic architecture of Hox gene clusters. Science 334(6053):222-225.
-
(2011)
Science
, vol.334
, Issue.6053
, pp. 222-225
-
-
Noordermeer, D.1
-
8
-
-
84899894562
-
Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci
-
Noordermeer D, et al. (2014) Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci. eLife 3:e02557.
-
(2014)
eLife
, vol.3
, pp. e02557
-
-
Noordermeer, D.1
-
9
-
-
78651514974
-
Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
-
Bantignies F, et al. (2011) Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila. Cell 144(2):214-226.
-
(2011)
Cell
, vol.144
, Issue.2
, pp. 214-226
-
-
Bantignies, F.1
-
10
-
-
79953750893
-
Interactions among Polycomb domains are guided by chromosome architecture
-
Tolhuis B, et al. (2011) Interactions among Polycomb domains are guided by chromosome architecture. PLoS Genet 7(3):e1001343.
-
(2011)
PLoS Genet
, vol.7
, Issue.3
, pp. e1001343
-
-
Tolhuis, B.1
-
11
-
-
85027929606
-
Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization
-
Denholtz M, et al. (2013) Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization. Cell Stem Cell 13(5):602-616.
-
(2013)
Cell Stem Cell
, vol.13
, Issue.5
, pp. 602-616
-
-
Denholtz, M.1
-
12
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, et al. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326(5950):289-293.
-
(2009)
Science
, vol.326
, Issue.5950
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
13
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
Guelen L, et al. (2008) Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453(7197):948-951.
-
(2008)
Nature
, vol.453
, Issue.7197
, pp. 948-951
-
-
Guelen, L.1
-
14
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon JR, et al. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485(7398):376-380.
-
(2012)
Nature
, vol.485
, Issue.7398
, pp. 376-380
-
-
Dixon, J.R.1
-
15
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y, et al. (2012) A map of the cis-regulatory sequences in the mouse genome. Nature 488(7409):116-120.
-
(2012)
Nature
, vol.488
, Issue.7409
, pp. 116-120
-
-
Shen, Y.1
-
16
-
-
41949094076
-
Global chromatin domain organization of the Drosophila genome
-
de Wit E, Braunschweig U, Greil F, Bussemaker HJ, van Steensel B (2008) Global chromatin domain organization of the Drosophila genome. PLoS Genet 4(3):e1000045.
-
(2008)
PLoS Genet
, vol.4
, Issue.3
, pp. e1000045
-
-
De Wit, E.1
Braunschweig, U.2
Greil, F.3
Bussemaker, H.J.4
Van Steensel, B.5
-
17
-
-
79960980390
-
Variegated gene expression caused by cell-specific long-range DNA interactions
-
Noordermeer D, et al. (2011) Variegated gene expression caused by cell-specific long-range DNA interactions. Nat Cell Biol 13(8):944-951.
-
(2011)
Nat Cell Biol
, vol.13
, Issue.8
, pp. 944-951
-
-
Noordermeer, D.1
-
18
-
-
79959952919
-
The inactive X chromosome adopts a unique threedimensional conformation that is dependent on Xist RNA
-
Splinter E, et al. (2011) The inactive X chromosome adopts a unique threedimensional conformation that is dependent on Xist RNA. Genes Dev 25(13):1371-1383.
-
(2011)
Genes Dev
, vol.25
, Issue.13
, pp. 1371-1383
-
-
Splinter, E.1
-
19
-
-
77952576224
-
Molecular maps of the reorganization of genomenuclear lamina interactions during differentiation
-
Peric-Hupkes D, et al. (2010) Molecular maps of the reorganization of genomenuclear lamina interactions during differentiation. Mol Cell 38(4):603-613.
-
(2010)
Mol Cell
, vol.38
, Issue.4
, pp. 603-613
-
-
Peric-Hupkes, D.1
-
20
-
-
84873375779
-
Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
-
Meuleman W, et al. (2013) Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence. Genome Res 23(2):270-280.
-
(2013)
Genome Res
, vol.23
, Issue.2
, pp. 270-280
-
-
Meuleman, W.1
-
21
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
Zhu J, et al. (2013) Genome-wide chromatin state transitions associated with developmental and environmental cues. Cell 152(3):642-654.
-
(2013)
Cell
, vol.152
, Issue.3
, pp. 642-654
-
-
Zhu, J.1
-
22
-
-
84867070913
-
Complexity of chromatin folding is captured by the strings and binders switch model
-
Barbieri M, et al. (2012) Complexity of chromatin folding is captured by the strings and binders switch model. Proc Natl Acad Sci USA 109(40):16173-16178.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.40
, pp. 16173-16178
-
-
Barbieri, M.1
-
23
-
-
0037263482
-
Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates
-
Lundin LG, Larhammar D, Hallböök F (2003) Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates. J Struct Funct Genomics 3(1-4):53-63.
-
(2003)
J Struct Funct Genomics
, vol.3
, Issue.1-4
, pp. 53-63
-
-
Lundin, L.G.1
Larhammar, D.2
Hallböök, F.3
-
24
-
-
53749095111
-
Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters
-
Sundström G, Larsson TA, Larhammar D (2008) Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters. BMC Evol Biol 8:254.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 254
-
-
Sundström, G.1
Larsson, T.A.2
Larhammar, D.3
-
25
-
-
23044477774
-
Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes
-
Spitz F, Herkenne C, Morris MA, Duboule D (2005) Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet 37(8):889-893.
-
(2005)
Nat Genet
, vol.37
, Issue.8
, pp. 889-893
-
-
Spitz, F.1
Herkenne, C.2
Morris, M.A.3
Duboule, D.4
-
26
-
-
84875703872
-
Single-cell dynamics of genome-nuclear lamina interactions
-
Kind J, et al. (2013) Single-cell dynamics of genome-nuclear lamina interactions. Cell 153(1):178-192.
-
(2013)
Cell
, vol.153
, Issue.1
, pp. 178-192
-
-
Kind, J.1
-
27
-
-
59949085939
-
H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
-
Pauler FM, et al. (2009) H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res 19(2):221-233.
-
(2009)
Genome Res
, vol.19
, Issue.2
, pp. 221-233
-
-
Pauler, F.M.1
-
28
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder S, et al. (2010) Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nat Genet 42(1):53-61.
-
(2010)
Nat Genet
, vol.42
, Issue.1
, pp. 53-61
-
-
Schoenfelder, S.1
-
29
-
-
84862908850
-
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
-
Li G, et al. (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell 148(1-2):84-98.
-
(2012)
Cell
, vol.148
, Issue.1-2
, pp. 84-98
-
-
Li, G.1
-
30
-
-
84900028471
-
Unraveling architecture of the pluripotent genome
-
Phillips-Cremins JE (2014) Unraveling architecture of the pluripotent genome. Curr Opin Cell Biol 28:96-104.
-
(2014)
Curr Opin Cell Biol
, vol.28
, pp. 96-104
-
-
Phillips-Cremins, J.E.1
-
31
-
-
77952994784
-
Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
-
Ryba T, et al. (2010) Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res 20(6):761-770.
-
(2010)
Genome Res
, vol.20
, Issue.6
, pp. 761-770
-
-
Ryba, T.1
-
32
-
-
34248593510
-
Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation
-
Morey C, Da Silva NR, Perry P, Bickmore WA (2007) Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation. Development 134(5):909-919.
-
(2007)
Development
, vol.134
, Issue.5
, pp. 909-919
-
-
Morey, C.1
Da Silva, N.R.2
Perry, P.3
Bickmore, W.A.4
|