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Volumn 6, Issue , 2015, Pages

Reconstitution and structure of a bacterial Pnkp1-Rnl-Hen1 RNA repair complex

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; HEN1 PROTEIN; PNKP1 PROTEIN; RNL PROTEIN; UNCLASSIFIED DRUG; METHYLTRANSFERASE; MULTIENZYME COMPLEX; PHOSPHOTRANSFERASE; RNA LIGASE;

EID: 84928137799     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms7876     Document Type: Article
Times cited : (11)

References (37)
  • 1
    • 0020479406 scopus 로고
    • The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28S ribosomal ribonucleic acid
    • Endo, Y. & Wool, I. G. The site of action of alpha-sarcin on eukaryotic ribosomes. The sequence at the alpha-sarcin cleavage site in 28S ribosomal ribonucleic acid. J. Biol. Chem. 257, 9054-9060 (1982).
    • (1982) J. Biol. Chem. , vol.257 , pp. 9054-9060
    • Endo, Y.1    Wool, I.G.2
  • 2
    • 0023664263 scopus 로고
    • The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28S ribosomal RNA caused by the toxins
    • Endo, Y., Mitsui, K., Motizuki, M. & Tsurugi, K. The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28S ribosomal RNA caused by the toxins. J. Biol. Chem. 262, 5908-5912 (1987).
    • (1987) J. Biol. Chem. , vol.262 , pp. 5908-5912
    • Endo, Y.1    Mitsui, K.2    Motizuki, M.3    Tsurugi, K.4
  • 3
    • 27144474752 scopus 로고    scopus 로고
    • The Kluyveromyces lactis gamma-toxin targets tRNA anticodons
    • Lu, J., Huang, B., Esberg, A., Johansson, M. J. & Bystrom, A. S. The Kluyveromyces lactis gamma-toxin targets tRNA anticodons. RNA 11, 1648-1654 (2005).
    • (2005) RNA , vol.11 , pp. 1648-1654
    • Lu, J.1    Huang, B.2    Esberg, A.3    Johansson, M.J.4    Bystrom, A.S.5
  • 4
    • 46949090025 scopus 로고    scopus 로고
    • The primary target of the killer toxin from Pichia acaciae is tRNA(Gln)
    • Klassen, R. et al. The primary target of the killer toxin from Pichia acaciae is tRNA(Gln). Mol. Microbiol. 69, 681-697 (2008).
    • (2008) Mol. Microbiol. , vol.69 , pp. 681-697
    • Klassen, R.1
  • 5
    • 84899630852 scopus 로고    scopus 로고
    • Structure, mechanism, and specificity of a eukaryal tRNA restriction enzyme involved in self-nonself discrimination
    • Chakravarty, A. K., Smith, P., Jalan, R. & Shuman, S. Structure, mechanism, and specificity of a eukaryal tRNA restriction enzyme involved in self-nonself discrimination. Cell Rep. 7, 339-347 (2014).
    • (2014) Cell Rep. , vol.7 , pp. 339-347
    • Chakravarty, A.K.1    Smith, P.2    Jalan, R.3    Shuman, S.4
  • 6
    • 80053474881 scopus 로고    scopus 로고
    • Toxins-antitoxins: Diversity, evolution and function
    • Hayes, F. & Van Melderen, L. Toxins-antitoxins: diversity, evolution and function. Crit. Rev. Biochem. Mol. Biol. 46, 386-408 (2011).
    • (2011) Crit. Rev. Biochem. Mol. Biol. , vol.46 , pp. 386-408
    • Hayes, F.1    Van Melderen, L.2
  • 7
    • 22544481439 scopus 로고    scopus 로고
    • Phage abortive infection in lactococci: Variations on a theme
    • Chopin, M. C., Chopin, A. & Bidnenko, E. Phage abortive infection in lactococci: variations on a theme. Curr. Opin. Microbiol. 8, 473-479 (2005).
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 473-479
    • Chopin, M.C.1    Chopin, A.2    Bidnenko, E.3
  • 8
    • 84862602464 scopus 로고    scopus 로고
    • Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics
    • Zhang, D., de Souza, R. F., Anantharaman, V., Iyer, L. M. & Aravind, L. Polymorphic toxin systems: comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics. Biol. Direct 7, 18 (2012).
    • (2012) Biol. Direct , vol.7 , pp. 18
    • Zhang, D.1    De Souza, R.F.2    Anantharaman, V.3    Iyer, L.M.4    Aravind, L.5
  • 9
    • 80052196405 scopus 로고    scopus 로고
    • Diversity of bacterial type II toxin-antitoxin systems: A comprehensive search and functional analysis of novel families
    • Leplae, R. et al. Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families. Nucleic Acids Res. 39, 5513-5525 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5513-5525
    • Leplae, R.1
  • 10
    • 84877836829 scopus 로고    scopus 로고
    • Ribonucleases in bacterial toxin-antitoxin systems
    • Cook, G. M. et al. Ribonucleases in bacterial toxin-antitoxin systems. Biochim. Biophys. Acta 1829, 523-531 (2013).
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 523-531
    • Cook, G.M.1
  • 11
    • 84878893667 scopus 로고    scopus 로고
    • Comprehensive analysis of the HEPN superfamily: Identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
    • Anantharaman, V., Makarova, K. S., Burroughs, A. M., Koonin, E. V. &Aravind, L. Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing. Biol. Direct 8, 15 (2013).
    • (2013) Biol. Direct , vol.8 , pp. 15
    • Anantharaman, V.1    Makarova, K.S.2    Burroughs, A.M.3    Koonin, E.V.4    Aravind, L.5
  • 12
    • 1942533451 scopus 로고    scopus 로고
    • Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease
    • Arcus, V. L., Backbro, K., Roos, A., Daniel, E. L. & Baker, E. N. Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease. J. Biol. Chem. 279, 16471-16478 (2004).
    • (2004) J. Biol. Chem. , vol.279 , pp. 16471-16478
    • Arcus, V.L.1    Backbro, K.2    Roos, A.3    Daniel, E.L.4    Baker, E.N.5
  • 13
    • 0033605708 scopus 로고    scopus 로고
    • A cytotoxic ribonuclease targeting specific transfer RNA anticodons
    • Ogawa, T. et al. A cytotoxic ribonuclease targeting specific transfer RNA anticodons. Science 283, 2097-2100 (1999).
    • (1999) Science , vol.283 , pp. 2097-2100
    • Ogawa, T.1
  • 14
    • 0027724879 scopus 로고
    • Functional expression and properties of the tRNA(Lys)-specific core anticodon nuclease encoded by Escherichia coli prrC
    • Morad, I., Chapman-Shimshoni, D., Amitsur, M. & Kaufmann, G. Functional expression and properties of the tRNA(Lys)-specific core anticodon nuclease encoded by Escherichia coli prrC. J. Biol. Chem. 268, 26842-26849 (1993).
    • (1993) J. Biol. Chem. , vol.268 , pp. 26842-26849
    • Morad, I.1    Chapman-Shimshoni, D.2    Amitsur, M.3    Kaufmann, G.4
  • 15
    • 0035930345 scopus 로고    scopus 로고
    • Crystal structure of colicin E3: Implications for cell entry and ribosome inactivation
    • Soelaiman, S., Jakes, K., Wu, N., Li, C. & Shoham, M. Crystal structure of colicin E3: implications for cell entry and ribosome inactivation. Mol. Cell 8, 1053-1062 (2001).
    • (2001) Mol. Cell , vol.8 , pp. 1053-1062
    • Soelaiman, S.1    Jakes, K.2    Wu, N.3    Li, C.4    Shoham, M.5
  • 16
    • 0034682503 scopus 로고    scopus 로고
    • A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops
    • Tomita, K., Ogawa, T., Uozumi, T., Watanabe, K. & Masaki, H. A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops. Proc. Natl Acad. Sci. USA 97, 8278-8283 (2000).
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 8278-8283
    • Tomita, K.1    Ogawa, T.2    Uozumi, T.3    Watanabe, K.4    Masaki, H.5
  • 17
    • 0037428226 scopus 로고    scopus 로고
    • The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
    • Pedersen, K. et al. The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 112, 131-140 (2003).
    • (2003) Cell , vol.112 , pp. 131-140
    • Pedersen, K.1
  • 18
    • 71149087505 scopus 로고    scopus 로고
    • The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE
    • Neubauer, C. et al. The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell 139, 1084-1095 (2009).
    • (2009) Cell , vol.139 , pp. 1084-1095
    • Neubauer, C.1
  • 19
    • 37649005671 scopus 로고    scopus 로고
    • MazF, an mRNA interferase, mediates programmed cell death during multicellular Myxococcus development
    • Nariya, H. & Inouye, M. MazF, an mRNA interferase, mediates programmed cell death during multicellular Myxococcus development. Cell 132, 55-66 (2008).
    • (2008) Cell , vol.132 , pp. 55-66
    • Nariya, H.1    Inouye, M.2
  • 20
    • 0023388202 scopus 로고
    • Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA
    • Amitsur, M., Levitz, R. & Kaufmann, G. Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA. EMBO J. 6, 2499-2503 (1987).
    • (1987) EMBO J. , vol.6 , pp. 2499-2503
    • Amitsur, M.1    Levitz, R.2    Kaufmann, G.3
  • 21
    • 23644456852 scopus 로고    scopus 로고
    • An end-healing enzyme from Clostridium thermocellum with 5' kinase, 2',3' phosphatase, and adenylyltransferase activities
    • Martins, A. & Shuman, S. An end-healing enzyme from Clostridium thermocellum with 5' kinase, 2',3' phosphatase, and adenylyltransferase activities. RNA 11, 1271-1280 (2005).
    • (2005) RNA , vol.11 , pp. 1271-1280
    • Martins, A.1    Shuman, S.2
  • 22
    • 70349847853 scopus 로고    scopus 로고
    • Reconstituting bacterial RNA repair and modification in vitro
    • Chan, C. M., Zhou, C. & Huang, R. H. Reconstituting bacterial RNA repair and modification in vitro. Science 326, 247 (2009).
    • (2009) Science , vol.326 , pp. 247
    • Chan, C.M.1    Zhou, C.2    Huang, R.H.3
  • 23
    • 84863155474 scopus 로고    scopus 로고
    • The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family
    • Smith, P., Wang, L. K., Nair, P. A. & Shuman, S. The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family. Proc. Natl Acad. Sci. USA 109, 2296-2301 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 2296-2301
    • Smith, P.1    Wang, L.K.2    Nair, P.A.3    Shuman, S.4
  • 24
    • 84861359020 scopus 로고    scopus 로고
    • Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair
    • Wang, P. et al. Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair. Proc. Natl Acad. Sci. USA 109, 13248-13253 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 13248-13253
    • Wang, P.1
  • 25
    • 84862936702 scopus 로고    scopus 로고
    • Probing the substrate specificity of the bacterial Pnkp/Hen1 RNA repair system using synthetic RNAs
    • Zhang, C., Chan, C. M., Wang, P. & Huang, R. H. Probing the substrate specificity of the bacterial Pnkp/Hen1 RNA repair system using synthetic RNAs. RNA 18, 335-344 (2012).
    • (2012) RNA , vol.18 , pp. 335-344
    • Zhang, C.1    Chan, C.M.2    Wang, P.3    Huang, R.H.4
  • 26
    • 56649103902 scopus 로고    scopus 로고
    • Searching protein structure databases with DaliLite v.3
    • Holm, L., Kaariainen, S., Rosenstrom, P. & Schenkel, A. Searching protein structure databases with DaliLite v.3. Bioinformatics 24, 2780-2781 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 2780-2781
    • Holm, L.1    Kaariainen, S.2    Rosenstrom, P.3    Schenkel, A.4
  • 27
    • 0036711227 scopus 로고    scopus 로고
    • Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase
    • Galburt, E. A., Pelletier, J., Wilson, G. & Stoddard, B. L. Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase. Structure 10, 1249-1260 (2002).
    • (2002) Structure , vol.10 , pp. 1249-1260
    • Galburt, E.A.1    Pelletier, J.2    Wilson, G.3    Stoddard, B.L.4
  • 28
    • 1342327713 scopus 로고    scopus 로고
    • Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase
    • Eastberg, J. H., Pelletier, J. & Stoddard, B. L. Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase. Nucleic Acids Res. 32, 653-660 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 653-660
    • Eastberg, J.H.1    Pelletier, J.2    Stoddard, B.L.3
  • 29
    • 34548151225 scopus 로고    scopus 로고
    • Structure-function analysis of the 3' phosphatase component of T4 polynucleotide kinase/phosphatase
    • Zhu, H., Smith, P., Wang, L. K. & Shuman, S. Structure-function analysis of the 3' phosphatase component of T4 polynucleotide kinase/phosphatase. Virology 366, 126-136 (2007).
    • (2007) Virology , vol.366 , pp. 126-136
    • Zhu, H.1    Smith, P.2    Wang, L.K.3    Shuman, S.4
  • 30
    • 80555144193 scopus 로고    scopus 로고
    • The structural basis for substrate recognition by mammalian polynucleotide kinase 3' phosphatase
    • Garces, F., Pearl, L. H. & Oliver, A. W. The structural basis for substrate recognition by mammalian polynucleotide kinase 3' phosphatase. Mol. Cell 44, 385-396 (2011).
    • (2011) Mol. Cell , vol.44 , pp. 385-396
    • Garces, F.1    Pearl, L.H.2    Oliver, A.W.3
  • 31
    • 70349939426 scopus 로고    scopus 로고
    • Structural insights into mechanisms of the small RNA methyltransferase HEN1
    • Huang, Y. et al. Structural insights into mechanisms of the small RNA methyltransferase HEN1. Nature 461, 823-827 (2009).
    • (2009) Nature , vol.461 , pp. 823-827
    • Huang, Y.1
  • 32
    • 0034303273 scopus 로고    scopus 로고
    • Microbial composition of supra- and subgingival plaque in subjects with adult periodontitis
    • Ximenez-Fyvie, L. A., Haffajee, A. D. & Socransky, S. S. Microbial composition of supra- and subgingival plaque in subjects with adult periodontitis. J. Clin. Periodontol. 27, 722-732 (2000).
    • (2000) J. Clin. Periodontol. , vol.27 , pp. 722-732
    • Ximenez-Fyvie, L.A.1    Haffajee, A.D.2    Socransky, S.S.3
  • 33
    • 33645906591 scopus 로고    scopus 로고
    • Molecular identification of an invasive gingival bacterial community
    • Fredricks, D. N., Schubert, M. M. & Myerson, D. Molecular identification of an invasive gingival bacterial community. Clin. Infect. Dis. 41, e1-e4 (2005).
    • (2005) Clin. Infect. Dis. , vol.41 , pp. e1-e4
    • Fredricks, D.N.1    Schubert, M.M.2    Myerson, D.3
  • 34
    • 33845669624 scopus 로고    scopus 로고
    • A three-year prospective study of adult subjects with gingivitis II: Microbiological parameters
    • Teles, R. P. et al. A three-year prospective study of adult subjects with gingivitis II: microbiological parameters. J. Clin. Periodontol. 34, 7-17 (2007).
    • (2007) J. Clin. Periodontol. , vol.34 , pp. 7-17
    • Teles, R.P.1
  • 36
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221 (2010).
    • (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.66 , pp. 213-221
    • Adams, P.D.1


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