-
1
-
-
0023388202
-
Bacteriophage T4 anticodon nuclease, polynucleotide kinase, and RNA ligase reprocess the host lysine tRNA
-
Amitsur M., Levitz R., and Kaufman G. Bacteriophage T4 anticodon nuclease, polynucleotide kinase, and RNA ligase reprocess the host lysine tRNA. EMBO J. 6 (1987) 2499-2503
-
(1987)
EMBO J.
, vol.6
, pp. 2499-2503
-
-
Amitsur, M.1
Levitz, R.2
Kaufman, G.3
-
2
-
-
33749525674
-
- formation in an enzyme active site
-
- formation in an enzyme active site. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 14732-14737
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 14732-14737
-
-
Baxter, N.J.1
Olguin, L.F.2
Golicnik, M.3
Feng, G.4
Hounslow, A.M.5
Bermel, W.6
Blackburn, G.M.7
Hollfelder, F.8
Waltho, J.P.9
Williams, N.H.10
-
3
-
-
0014197971
-
The enzymatic cleavage of phosphate termini from polynucleotides
-
Becker A., and Hurwitz J. The enzymatic cleavage of phosphate termini from polynucleotides. J. Biol. Chem. 242 (1967) 936-950
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 936-950
-
-
Becker, A.1
Hurwitz, J.2
-
4
-
-
20044390734
-
The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase
-
Bernstein N.K., Williams R.S., Rakovszky M.L., Cui D., Green R., Galicia S., Koch C.A., Cass C.E., Durocher D., Weinfeld M., and Glover J.N.M. The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase. Mol. Cell 17 (2005) 657-670
-
(2005)
Mol. Cell
, vol.17
, pp. 657-670
-
-
Bernstein, N.K.1
Williams, R.S.2
Rakovszky, M.L.3
Cui, D.4
Green, R.5
Galicia, S.6
Koch, C.A.7
Cass, C.E.8
Durocher, D.9
Weinfeld, M.10
Glover, J.N.M.11
-
5
-
-
3543012707
-
Crystallography and NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., Read R.J., Rice L.M., Simonson T., and Warren G.L. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D54 (1998) 905-921
-
(1998)
Acta Crystallogr.
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
6
-
-
33746922036
-
Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes
-
Burroughs A.M., Allen K.N., Dunaway-Mariano D., and Aravind L. Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. J. Mol. Biol. 361 (2006) 1003-1034
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 1003-1034
-
-
Burroughs, A.M.1
Allen, K.N.2
Dunaway-Mariano, D.3
Aravind, L.4
-
7
-
-
0017757667
-
3′-Phosphatase activity in T4 polynucleotide kinase
-
Cameron V., and Uhlenbeck O.C. 3′-Phosphatase activity in T4 polynucleotide kinase. Biochemistry 16 (1977) 5120-5126
-
(1977)
Biochemistry
, vol.16
, pp. 5120-5126
-
-
Cameron, V.1
Uhlenbeck, O.C.2
-
8
-
-
0035902464
-
- complex with phosphoserine phosphatase
-
- complex with phosphoserine phosphatase. Proc. Natl. Acad. Sci. U.S.A. 98 (2001) 8525-8530
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 8525-8530
-
-
Cho, H.1
Wang, W.2
Kim, R.3
Yokota, H.4
Damo, S.5
Kin, S.H.6
Wemmer, D.7
Kustu, S.8
Yan, D.9
-
9
-
-
0032486282
-
A new class of phosphotransferases phosphorylated on an aspartate residue in an amino-terminal DXDX(T/V) motif
-
Collet J.F., Stroobant V., Pirard M., Delpierre G., and Van Schaftingen E. A new class of phosphotransferases phosphorylated on an aspartate residue in an amino-terminal DXDX(T/V) motif. J. Biol. Chem. 273 (1998) 14107-14112
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 14107-14112
-
-
Collet, J.F.1
Stroobant, V.2
Pirard, M.3
Delpierre, G.4
Van Schaftingen, E.5
-
10
-
-
0003845223
-
-
DeLano Scientific, San Carlos, CA http://www.pymol.org
-
DeLano W.L. The PyMOL Molecular Graphics System (2002), DeLano Scientific, San Carlos, CA. http://www.pymol.org http://www.pymol.org
-
(2002)
The PyMOL Molecular Graphics System
-
-
DeLano, W.L.1
-
11
-
-
1342327713
-
Recognition of DNA substrates by bacteriophage T4 polynucleotide kinase
-
Eastberg J.H., Pelletier J., and Stoddard B.L. Recognition of DNA substrates by bacteriophage T4 polynucleotide kinase. Nucleic Acids Res. 32 (2004) 653-660
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 653-660
-
-
Eastberg, J.H.1
Pelletier, J.2
Stoddard, B.L.3
-
12
-
-
34548179961
-
-
Elkins, J.M., Soundararajan, M., Yang, X., Papagrigoriou, E., Sundstrom, M., Edwards, A., Arrowsmith, C., Weigelt, J., Doyle, D.A., 2006. Structure of centaurin gamma 1. PBD ID 2IWR.
-
-
-
-
13
-
-
0036711227
-
Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase
-
Galburt E.A., Pelletier J., Wilson G., and Stoddard B.L. Structure of a tRNA repair enzyme and molecular biology workhorse: T4 polynucleotide kinase. Structure 10 (2002) 1249-1260
-
(2002)
Structure
, vol.10
, pp. 1249-1260
-
-
Galburt, E.A.1
Pelletier, J.2
Wilson, G.3
Stoddard, B.L.4
-
14
-
-
0037853262
-
Defining the active site of Schizosaccharomyces pombe CTD phosphatase Fcp1
-
Hausmann S., and Shuman S. Defining the active site of Schizosaccharomyces pombe CTD phosphatase Fcp1. J. Biol. Chem. 278 (2003) 13627-13632
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 13627-13632
-
-
Hausmann, S.1
Shuman, S.2
-
15
-
-
1642565356
-
Schizosaccharomyces pombe carboxyl-terminal domain (CTD) phosphatase Fcp1: distributive mechanism, minimal CTD substrate, and active site mapping
-
Hausmann S., Erdjument-Bromage H., and Shuman S. Schizosaccharomyces pombe carboxyl-terminal domain (CTD) phosphatase Fcp1: distributive mechanism, minimal CTD substrate, and active site mapping. J. Biol. Chem. 279 (2004) 10892-10900
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 10892-10900
-
-
Hausmann, S.1
Erdjument-Bromage, H.2
Shuman, S.3
-
17
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47 (1991) 110-118
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-118
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
18
-
-
0034669204
-
Crystal structure of the Xrcc4 DNA repair protein and implications for end joining
-
Junop M.S., Modesti M., Guarné A., Ghirlando R., Gellert M., and Yang W. Crystal structure of the Xrcc4 DNA repair protein and implications for end joining. EMBO J. 19 (2000) 5962-5970
-
(2000)
EMBO J.
, vol.19
, pp. 5962-5970
-
-
Junop, M.S.1
Modesti, M.2
Guarné, A.3
Ghirlando, R.4
Gellert, M.5
Yang, W.6
-
19
-
-
4143117908
-
Structure and mechanism of RNA polymerase CTD phosphatases
-
Kamenski T., Heilmeier S., Meinhart A., and Cramer P. Structure and mechanism of RNA polymerase CTD phosphatases. Mol. Cell 15 (2004) 399-407
-
(2004)
Mol. Cell
, vol.15
, pp. 399-407
-
-
Kamenski, T.1
Heilmeier, S.2
Meinhart, A.3
Cramer, P.4
-
20
-
-
0242585345
-
The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction
-
Lahiri S.D., Zhang G., Dunaway-Mariano D., and Allen K.N. The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction. Science 299 (2003) 2067-2071
-
(2003)
Science
, vol.299
, pp. 2067-2071
-
-
Lahiri, S.D.1
Zhang, G.2
Dunaway-Mariano, D.3
Allen, K.N.4
-
21
-
-
0032544311
-
Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: high level of similarity of the active center with other viral integrases
-
Maignan S., Guilloteau J.P., Zhou-Lin Q., Clément-Mella C., and Mikol V. Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: high level of similarity of the active center with other viral integrases. J. Mol. Biol. 282 (1998) 359-368
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 359-368
-
-
Maignan, S.1
Guilloteau, J.P.2
Zhou-Lin, Q.3
Clément-Mella, C.4
Mikol, V.5
-
22
-
-
2442437949
-
Characterization of a baculovirus enzyme with RNA ligase, polynucleotide 5′ kinase and polynucleotide 3′ phosphatase activities
-
Martins A., and Shuman S. Characterization of a baculovirus enzyme with RNA ligase, polynucleotide 5′ kinase and polynucleotide 3′ phosphatase activities. J. Biol. Chem. 279 (2004) 18220-18231
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 18220-18231
-
-
Martins, A.1
Shuman, S.2
-
23
-
-
0022137932
-
T4 polynucleotide kinase; cloning of the gene (pseT) and amplification of its product
-
Midgley C.A., and Murray N.E. T4 polynucleotide kinase; cloning of the gene (pseT) and amplification of its product. EMBO J. 4 (1985) 2695-2703
-
(1985)
EMBO J.
, vol.4
, pp. 2695-2703
-
-
Midgley, C.A.1
Murray, N.E.2
-
24
-
-
0033638223
-
Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast
-
Mossessova E., and Lima C.D. Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. Mol. Cell 5 (2000) 865-876
-
(2000)
Mol. Cell
, vol.5
, pp. 865-876
-
-
Mossessova, E.1
Lima, C.D.2
-
25
-
-
0014027646
-
The enzymatic phosphorylation of ribonucleic acid and deoxyribonucleic acid: phosphorylation at 5′-hydroxyl termini
-
Novogrodsky A., and Hurwitz J. The enzymatic phosphorylation of ribonucleic acid and deoxyribonucleic acid: phosphorylation at 5′-hydroxyl termini. J. Biol. Chem. 241 (1966) 2923-2932
-
(1966)
J. Biol. Chem.
, vol.241
, pp. 2923-2932
-
-
Novogrodsky, A.1
Hurwitz, J.2
-
26
-
-
0014027742
-
The enzymatic phosphorylation of ribonucleic acid and deoxyribonucleic acid: further properties of the 5′-hydroxyl polynucleotide kinase
-
Novogrodsky A., Tal M., Traub A., and Hurwitz J. The enzymatic phosphorylation of ribonucleic acid and deoxyribonucleic acid: further properties of the 5′-hydroxyl polynucleotide kinase. J. Biol. Chem. 241 (1966) 2933-2943
-
(1966)
J. Biol. Chem.
, vol.241
, pp. 2933-2943
-
-
Novogrodsky, A.1
Tal, M.2
Traub, A.3
Hurwitz, J.4
-
27
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
28
-
-
0015712190
-
Physical characterization and simultaneous purification of bacteriophage T4 induced polynucleotide kinase, polynucleotide ligase, and deoxyribonucleic acid polymerase
-
Panet A., van de Sande J.H., Loewen P.C., Khorana H.G., Raae A.J., Lillehaug J.R., and Kleppe K. Physical characterization and simultaneous purification of bacteriophage T4 induced polynucleotide kinase, polynucleotide ligase, and deoxyribonucleic acid polymerase. Biochemistry 12 (1973) 5045-5050
-
(1973)
Biochemistry
, vol.12
, pp. 5045-5050
-
-
Panet, A.1
van de Sande, J.H.2
Loewen, P.C.3
Khorana, H.G.4
Raae, A.J.5
Lillehaug, J.R.6
Kleppe, K.7
-
29
-
-
0013791279
-
Phosphorylation of nucleic acid by an enzyme from T4 bacteriophage-infected Escherichia coli
-
Richardson C.C. Phosphorylation of nucleic acid by an enzyme from T4 bacteriophage-infected Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 54 (1965) 158-165
-
(1965)
Proc. Natl. Acad. Sci. U.S.A.
, vol.54
, pp. 158-165
-
-
Richardson, C.C.1
-
30
-
-
33744943284
-
The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain
-
Shi H., Rojas R., Bonifacino J.S., and Hurley J.H. The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain. Nat. Struct. Biol. 13 (2006) 540-548
-
(2006)
Nat. Struct. Biol.
, vol.13
, pp. 540-548
-
-
Shi, H.1
Rojas, R.2
Bonifacino, J.S.3
Hurley, J.H.4
-
31
-
-
0034435463
-
Crystal structure of the Escherichia coli peptide methionine sulphoxide reductase at 1.9 Å resolution
-
Tete-Favier F., Cobessi D., Boschl-Muller S., Azza S., Branlant G., and Aubry A. Crystal structure of the Escherichia coli peptide methionine sulphoxide reductase at 1.9 Å resolution. Structure 8 (2000) 1167-1178
-
(2000)
Structure
, vol.8
, pp. 1167-1178
-
-
Tete-Favier, F.1
Cobessi, D.2
Boschl-Muller, S.3
Azza, S.4
Branlant, G.5
Aubry, A.6
-
32
-
-
0025808169
-
Optically detected magnetic resonance study of the interactions of an arsenic(III) derivative of cacodylic acid with EcoRI methyl transferase
-
Tsao D.H.H., and Maki A.H. Optically detected magnetic resonance study of the interactions of an arsenic(III) derivative of cacodylic acid with EcoRI methyl transferase. Biochemistry 30 (1991) 4565-4572
-
(1991)
Biochemistry
, vol.30
, pp. 4565-4572
-
-
Tsao, D.H.H.1
Maki, A.H.2
-
33
-
-
0035920157
-
Domain structure and mutational analysis of T4 polynucleotide kinase
-
Wang L.K., and Shuman S. Domain structure and mutational analysis of T4 polynucleotide kinase. J. Biol. Chem. 276 (2001) 26868-26874
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 26868-26874
-
-
Wang, L.K.1
Shuman, S.2
-
34
-
-
0037082420
-
Mutational analysis defines the 5′-kinase and 3′-phosphatase active sites of T4 polynucleotide kinase
-
Wang L.K., and Shuman S. Mutational analysis defines the 5′-kinase and 3′-phosphatase active sites of T4 polynucleotide kinase. Nucleic Acids Res. 30 (2002) 1073-1080
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1073-1080
-
-
Wang, L.K.1
Shuman, S.2
-
35
-
-
0037099490
-
Structure and mechanism of T4 polynucleotide kinase-An RNA repair enzyme
-
Wang L.K., Lima C.D., and Shuman S. Structure and mechanism of T4 polynucleotide kinase-An RNA repair enzyme. EMBO J. 21 (2002) 3873-3880
-
(2002)
EMBO J.
, vol.21
, pp. 3873-3880
-
-
Wang, L.K.1
Lima, C.D.2
Shuman, S.3
|