SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data

RNA

Volumn 21, Issue 5, 2015, Pages 1042-1052

  Poulsen, Line Dahl ^a   Kielpinski, Lukasz Jan ^a   Salama, Sofie R ^b   Krogh, Anders ^a   Vinther, Jeppe ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b University of California Santa Cruz   (United States)

Author keywords

NPIA; RNA structure; Selection; Sequencing; SHAPE

Indexed keywords

ACID ANHYDRIDE; BIOTIN; COMPLEMENTARY DNA; N PROPANONE ISATOIC ANHYDRIDE; RIBONUCLEASE P; RNA 16S; STREPTAVIDIN; UNCLASSIFIED DRUG; BACTERIAL RNA; CAPPED RNA; HYDROXYL RADICAL; RNA; RNA PROBE;

ARTICLE; BACILLUS SUBTILIS; CONTROLLED STUDY; DNA RNA HYBRIDIZATION; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION; RNA PROBE; RNA SEQUENCE; RNA STRUCTURE; SELECTIVE 2' HYDROXYL ACYLATION ANALYZED BY PRIMER EXTENSION; STRUCTURE ANALYSIS; ACYLATION; CHEMISTRY; CONFORMATION; GENETICS; METABOLISM; PROCEDURES; SEQUENCE ANALYSIS; TRANSCRIPTION INITIATION SITE;

ACYLATION; BACILLUS SUBTILIS; BIOTIN; ESCHERICHIA COLI; HYDROXYL RADICAL; NUCLEIC ACID CONFORMATION; RIBONUCLEASE P; RNA; RNA CAPS; RNA PROBES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, RNA; TRANSCRIPTION INITIATION SITE;

EID: 84928032063     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.047068.114     Document Type: Article

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