Characterization of parallel β-sheets at interfaces by chiral sum frequency generation spectroscopy

Journal of Physical Chemistry Letters

Volumn 6, Issue 8, 2015, Pages 1310-1315

  Fu, Li ^a,c   Wang, Zhuguang ^a   Psciuk, Brian T ^a   Xiao, Dequan ^a,b   Batista, Victor S ^a   Yan, Elsa C Y ^a  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF NEW HAVEN   (United States)

^c PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

ab initio calculation; amylin; human islet amyloid polypeptide; orientation; vibrational spectroscopy

Indexed keywords

AMIDES; CALCULATIONS; CRYSTAL ORIENTATION; GLYCOPROTEINS; VIBRATIONAL SPECTROSCOPY;

AB INITIO CALCULATIONS; AMYLIN; COMPUTATIONAL MODEL; HUMAN ISLETS; OPTICAL TECHNIQUE; PROTEIN SECONDARY STRUCTURE; SUM-FREQUENCY GENERATION SPECTROSCOPY; VIBRATIONAL COUPLINGS;

INTERFEROMETRY;

AMYLIN; GLASS; LIPID; WATER;

AIR; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; PROCEDURES; PROTEIN SECONDARY STRUCTURE; SPECTROSCOPY;

AIR; GLASS; HUMANS; ISLET AMYLOID POLYPEPTIDE; LIPIDS; MODELS, MOLECULAR; PROTEIN STRUCTURE, SECONDARY; SPECTRUM ANALYSIS; WATER;

EID: 84927943926     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/acs.jpclett.5b00326     Document Type: Article

References (41)

1. Zhang, S. G. Fabrication of Novel Biomaterials through Molecular Self-Assembly Nat. Biotechnol. 2003, 21, 1171-1178
2. Luca, S.; Yau, W. M.; Leapman, R.; Tycko, R. Peptide Conformation and Supramolecular Organization in Amylin Fibrils: Constraints from Solid-State NMR Biochemistry 2007, 46, 13505-13522
3. DeToma, A. S.; Salamekh, S.; Ramamoorthy, A.; Lim, M. H. Misfolded Proteins in Alzheimer's Disease and Type II Diabetes Chem. Soc. Rev. 2012, 41, 608-621
4. Wang, H. F.; Gan, W.; Lu, R.; Rao, Y.; Wu, B. H. Quantitative Spectral and Orientational Analysis in Surface Sum Frequency Generation Vibrational Spectroscopy (SFG-VS) Int. Rev. Phys. Chem. 2005, 24, 191-256
5. Weidner, T.; Apte, J. S.; Gamble, L. J.; Castner, D. G. Probing the Orientation and Conformation of Alpha-Helix and Beta-Strand Model Peptides on Self-Assembled Monolayers Using Sum Frequency Generation and Nexafs Spectroscopy Langmuir 2010, 26, 3433-3440
6. Nguyen, K. T.; King, J. T.; Chen, Z. Orientation Determination of Interfacial Beta-Sheet Structures in Situ J. Phys. Chem. B 2010, 114, 8291-8300
7. Kim, J.; Somorjai, G. A. Molecular Packing of Lysozyme, Fibrinogen, and Bovine Serum Albumin on Hydrophilic and Hydrophobic Surfaces Studied by Infrared-Visible Sum Frequency Generation and Fluorescence Microscopy J. Am. Chem. Soc. 2003, 125, 3150-3158
8. Nguyen, K. T.; Le Clair, S. V.; Ye, S. J.; Chen, Z. Orientation Determination of Protein Helical Secondary Structures Using Linear and Nonlinear Vibrational Spectroscopy J. Phys. Chem. B 2009, 113, 12169-12180
9. Somorjai, G. A.; Frei, H.; Park, J. Y. Advancing the Frontiers in Nanocatalysis, Biointerfaces, and Renewable Energy Conversion by Innovations of Surface Techniques J. Am. Chem. Soc. 2009, 131, 16589-16605
10. Engel, M. F. M.; VandenAkker, C. C.; Schleeger, M.; Velikov, K. P.; Koenderink, G. H.; Bonn, M. The Polyphenol EGCG Inhibits Amyloid Formation Less Efficiently at Phospholipid Interfaces Than in Bulk Solution J. Am. Chem. Soc. 2012, 134, 14781-14788
11. vandenAkker, C. C.; Engel, M. F. M.; Velikov, K. P.; Bonn, M.; Koenderink, G. H. Morphology and Persistence Length of Amyloid Fibrils Are Correlated to Peptide Molecular Structure J. Am. Chem. Soc. 2011, 133, 18030-18033
12. Jena, K. C.; Covert, P. A.; Hall, S. A.; Hore, D. K. Absolute Orientation of Ester Side Chains on the PMMA Surface J. Phys. Chem. C 2011, 115, 15570-15574
13. Roy, S.; Covert, P. A.; FitzGerald, W. R.; Hore, D. K. Biomolecular Structure at Solid-Liquid Interfaces as Revealed by Nonlinear Optical Spectroscopy Chem. Rev. 2014, 114, 8388-8415
14. Stokes, G. Y.; Gibbs-Davis, J. M.; Boman, F. C.; Stepp, B. R.; Condie, A. G.; Nguyen, S. T.; Geiger, F. M. Making "Sense" of DNA J. Am. Chem. Soc. 2007, 129, 7492-7493
15. Wurpel, G. W. H.; Sovago, M.; Bonn, M. Sensitive Probing of DNA Binding to a Cationic Lipid Monolayer J. Am. Chem. Soc. 2007, 129, 8420-+
16. Howell, C.; Schmidt, R.; Kurz, V.; Koelsch, P. Sum-Frequency-Generation Spectroscopy of DNA Films in Air and Aqueous Environments Biointerphases 2008, 3, Fc47-Fc51
17. Walter, S. R.; Geiger, F. M. DNA on Stage: Showcasing Oligonucleotides at Surfaces and Interfaces with Second Harmonic and Vibrational Sum Frequency Generation J. Phys. Chem. Lett. 2010, 1, 9-15
18. Nagahara, T.; Kisoda, K.; Harima, H.; Aida, M.; Ishibashi, T. A. Chiral Sum Frequency Spectroscopy of Thin Films of Porphyrin J-Aggregates J. Phys. Chem. B 2009, 113, 5098-5103
19. Holman, J.; Ye, S.; Neivandt, D. J.; Davies, P. B. Studying Nanoparticle-Induced Structural Changes within Fatty Acid Multilayer Films Using Sum Frequency Generation Vibrational Spectroscopy J. Am. Chem. Soc. 2004, 126, 14322-14323
20. Kett, P. J. N.; Casford, M. T. L.; Davies, P. B. Orientation of Cholesterol in Hybrid Bilayer Membranes Calculated from the Phases of Methyl Resonances in Sum Frequency Generation Spectra. J. Chem. Phys. 2013, 138.
21. Liu, J.; Conboy, J. C. Direct Measurement of the Transbilayer Movement of Phospholipids by Sum-Frequency Vibrational Spectroscopy J. Am. Chem. Soc. 2004, 126, 8376-8377
22. Nielsen, J. T.; Bjerring, M.; Jeppesen, M. D.; Pedersen, R. O.; Pedersen, J. M.; Hein, K. L.; Vosegaard, T.; Skrydstrup, T.; Otzen, D. E.; Nielsen, N. C. Unique Identification of Supramolecular Structures in Amyloid Fibrils by Solid-State NMR Spectroscopy Angew. Chem., Int. Ed. 2009, 48, 2118-2121
23. Shen, Y. R. Surface-Properties Probed by 2nd-Harmonic and Sum-Frequency Generation Nature 1989, 337, 519-525
24. Simpson, G. J. Molecular Origins of the Remarkable Chiral Sensitivity of Second-Order Nonlinear Optics ChemPhysChem 2004, 5, 1301-1310
25. Haupert, L. M.; Simpson, G. J. Chirality in Nonlinear Optics Annu. Rev. Phys. Chem. 2009, 60, 345-365
26. Fu, L.; Liu, J.; Yan, E. C. Y. Chiral Sum Frequency Generation Spectroscopy for Characterizing Protein Secondary Structures at Interfaces J. Am. Chem. Soc. 2011, 133, 8094-8097
27. Fu, L.; Wang, Z. G.; Yan, E. C. Y. Chiral Vibrational Structures of Proteins at Interfaces Probed by Sum Frequency Generation Spectroscopy Int. J. Mol. Sci. 2011, 12, 9404-9425
28. Yan, E. C. Y.; Fu, L.; Wang, Z.; Liu, W. Biological Macromolecules at Interfaces Probed by Chiral Vibrational Sum Frequency Generation Spectroscopy Chem. Rev. 2014, 114, 8471-8498
29. Fu, L.; Ma, G.; Yan, E. C. Y. In Situ Misfolding of Human Islet Amyloid Polypeptide at Interfaces Probed by Vibrational Sum Frequency Generation J. Am. Chem. Soc. 2010, 132, 5405-5412
30. Fu, L.; Xiao, D. Q.; Wang, Z. G.; Batista, V. S.; Yan, E. C. Y. Chiral Sum Frequency Generation for in Situ Probing Proton Exchange in Antiparallel β-Sheets at Interfaces J. Am. Chem. Soc. 2013, 135, 3592-3598
31. Xiao, D. Q.; Fu, L.; Liu, J.; Batista, V. S.; Yan, E. C. Y. Amphiphilic Adsorption of Human Islet Amyloid Polypeptide Aggregates to Lipid/Aqueous Interfaces J. Mol. Biol. 2012, 421, 537-547
32. Poojari, C.; Xiao, D. Q.; Batista, V. S.; Strodel, B. Membrane Permeation Induced by Aggregates of Human Islet Amyloid Polypeptides Biophys. J. 2013, 105, 2323-2332
33. Knight, J. D.; Hebda, J. A.; Miranker, A. D. Conserved and Cooperative Assembly of Membrane-Bound α-Helical States of Islet Amyloid Polypeptide Biochemistry 2006, 45, 9496-9508
34. Fisk, J. D.; Gellman, S. H. A Parallel β-Sheet Model System That Folds in Water J. Am. Chem. Soc. 2001, 123, 343-344
35. Lambert, A. G.; Davies, P. B.; Neivandt, D. J. Implementing the Theory of Sum Frequency Generation Vibrational Spectroscopy: A Tutorial Review Appl. Spectrosc. Rev. 2005, 40, 103-145
36. Tamm, L. K.; Tatulian, S. A. Infrared Spectroscopy of Proteins and Peptides in Lipid Bilayers Q. Rev. Biophys. 1997, 30, 365-429
37. Barth, A.; Zscherp, C. What Vibrations Tell Us About Proteins Q. Rev. Biophys. 2002, 35, 369-430
38. Wang, J.; Chen, X. Y.; Clarke, M. L.; Chen, Z. Detection of Chiral Sum Frequency Generation Vibrational Spectra of Proteins and Peptides at Interfaces in Situ Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 4978-4983
39. Perry, J. M.; Moad, A. J.; Begue, N. J.; Wampler, R. D.; Simpson, G. J. Electronic and Vibrational Second-Order Nonlinear Optical Properties of Protein Secondary Structural Motifs J. Phys. Chem. B 2005, 109, 20009-20026
40. Hayashi, T.; Mukamel, S. Vibrational-Exciton Couplings for the Amide I, II, III, and a Modes of Peptides J. Phys. Chem. B 2007, 111, 11032-11046
41. Fisk, J. D.; Schmitt, M. A.; Gellman, S. H. Thermodynamic Analysis of Autonomous Parallel β-Sheet Formation in Water J. Am. Chem. Soc. 2006, 128, 7148-7149